EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSXCOG00000005764 (Gene tree)
Gene ID: -
Gene Symbol: -
Alias: HUPF1|KIAA0221|NORF1|RENT1|pNORF1|smg-2
Full Name: -
Gene Type: protein_coding
Species: Xiphophorus_couchianus
Status: putative
Strand: Minus strand
Length: 19182 bases
Position: chrKQ557224.1:22949906-22969087
Accession: -
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSXCOP00000007480	UPF1_Zn_bind	PF09416.10	1.2e-74	1	1
ENSXCOP00000007480	ResIII	PF04851.15	2.3e-05	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSXCOT00000007576	-	3087	-	ENSXCOP00000007480	1028 (aa)	-	-

Gene Model

Click here to download ENSXCOG00000005764's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSXCOG00000005764's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSXCOG00000005764	-	96	92.121	ENSXCOG00000015275	-	90	92.020

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSXCOG00000005764	-	100	94.859	ENSG00000005007	UPF1	92	94.859	Homo_sapiens
ENSXCOG00000005764	-	99	93.411	ENSAPOG00000023773	upf1	94	93.411	Acanthochromis_polyacanthus
ENSXCOG00000005764	-	100	98.353	ENSAPOG00000010916	-	94	98.353	Acanthochromis_polyacanthus
ENSXCOG00000005764	-	100	93.858	ENSAMEG00000011474	UPF1	93	93.858	Ailuropoda_melanoleuca
ENSXCOG00000005764	-	99	93.417	ENSACIG00000019949	upf1	94	93.398	Amphilophus_citrinellus
ENSXCOG00000005764	-	99	97.659	ENSACIG00000010985	-	100	97.659	Amphilophus_citrinellus
ENSXCOG00000005764	-	100	98.256	ENSAOCG00000006352	-	100	95.326	Amphiprion_ocellaris
ENSXCOG00000005764	-	99	92.892	ENSAOCG00000018519	upf1	94	92.892	Amphiprion_ocellaris
ENSXCOG00000005764	-	99	92.892	ENSAPEG00000016344	upf1	94	92.892	Amphiprion_percula
ENSXCOG00000005764	-	100	98.159	ENSAPEG00000006292	-	100	95.229	Amphiprion_percula
ENSXCOG00000005764	-	99	91.714	ENSATEG00000017867	upf1	94	92.271	Anabas_testudineus
ENSXCOG00000005764	-	100	98.062	ENSATEG00000016606	-	94	98.062	Anabas_testudineus
ENSXCOG00000005764	-	100	93.762	ENSAPLG00000009175	UPF1	99	93.762	Anas_platyrhynchos
ENSXCOG00000005764	-	100	92.514	ENSANAG00000024107	UPF1	94	92.514	Aotus_nancymaae
ENSXCOG00000005764	-	100	97.967	ENSACLG00000022630	-	94	97.967	Astatotilapia_calliptera
ENSXCOG00000005764	-	99	93.224	ENSACLG00000007181	upf1	94	93.204	Astatotilapia_calliptera
ENSXCOG00000005764	-	99	94.869	ENSAMXG00000042187	upf1	94	94.385	Astyanax_mexicanus
ENSXCOG00000005764	-	100	93.858	ENSBTAG00000020922	UPF1	92	93.858	Bos_taurus
ENSXCOG00000005764	-	97	51.179	WBGene00004880	smg-2	94	50.986	Caenorhabditis_elegans
ENSXCOG00000005764	-	100	93.858	ENSCJAG00000019627	UPF1	92	93.858	Callithrix_jacchus
ENSXCOG00000005764	-	100	93.858	ENSCAFG00000014578	UPF1	92	93.858	Canis_familiaris
ENSXCOG00000005764	-	100	94.859	ENSCAFG00020012347	UPF1	92	94.859	Canis_lupus_dingo
ENSXCOG00000005764	-	100	94.859	ENSCHIG00000011018	UPF1	92	94.859	Capra_hircus
ENSXCOG00000005764	-	100	93.666	ENSTSYG00000008877	UPF1	97	93.666	Carlito_syrichta
ENSXCOG00000005764	-	100	93.570	ENSCAPG00000005758	UPF1	94	93.090	Cavia_aperea
ENSXCOG00000005764	-	100	93.570	ENSCPOG00000025463	UPF1	94	93.090	Cavia_porcellus
ENSXCOG00000005764	-	100	94.859	ENSCCAG00000032175	UPF1	92	94.859	Cebus_capucinus
ENSXCOG00000005764	-	100	93.858	ENSCATG00000040306	UPF1	97	93.858	Cercocebus_atys
ENSXCOG00000005764	-	100	93.858	ENSCLAG00000004037	UPF1	99	93.378	Chinchilla_lanigera
ENSXCOG00000005764	-	100	94.859	ENSCSAG00000005276	UPF1	92	94.859	Chlorocebus_sabaeus
ENSXCOG00000005764	-	100	94.391	ENSCPBG00000012513	UPF1	93	94.391	Chrysemys_picta_bellii
ENSXCOG00000005764	-	74	82.768	ENSCING00000021399	-	91	82.768	Ciona_intestinalis
ENSXCOG00000005764	-	100	73.917	ENSCSAVG00000006533	-	94	73.821	Ciona_savignyi
ENSXCOG00000005764	-	100	93.858	ENSCANG00000029819	UPF1	96	93.858	Colobus_angolensis_palliatus
ENSXCOG00000005764	-	100	94.180	ENSCGRG00001021067	Upf1	93	93.695	Cricetulus_griseus_chok1gshd
ENSXCOG00000005764	-	100	93.186	ENSCGRG00000013480	Upf1	97	92.706	Cricetulus_griseus_crigri
ENSXCOG00000005764	-	100	97.961	ENSCSEG00000016159	-	94	97.961	Cynoglossus_semilaevis
ENSXCOG00000005764	-	99	88.144	ENSCSEG00000017239	upf1	94	88.167	Cynoglossus_semilaevis
ENSXCOG00000005764	-	100	99.128	ENSCVAG00000010561	upf1	94	99.128	Cyprinodon_variegatus
ENSXCOG00000005764	-	99	94.482	ENSDARG00000016302	upf1	94	94.773	Danio_rerio
ENSXCOG00000005764	-	100	91.267	ENSDORG00000009984	Upf1	94	90.787	Dipodomys_ordii
ENSXCOG00000005764	-	84	74.483	FBgn0030354	Upf1	75	73.952	Drosophila_melanogaster
ENSXCOG00000005764	-	51	90.170	ENSEBUG00000010069	upf1	87	90.170	Eptatretus_burgeri
ENSXCOG00000005764	-	100	94.762	ENSEASG00005006549	UPF1	92	94.762	Equus_asinus_asinus
ENSXCOG00000005764	-	100	94.762	ENSECAG00000010639	UPF1	92	94.762	Equus_caballus
ENSXCOG00000005764	-	99	94.509	ENSELUG00000012916	-	94	94.509	Esox_lucius
ENSXCOG00000005764	-	99	93.064	ENSELUG00000020917	upf1	94	92.967	Esox_lucius
ENSXCOG00000005764	-	100	93.762	ENSFCAG00000009757	UPF1	92	93.762	Felis_catus
ENSXCOG00000005764	-	100	94.402	ENSFALG00000009312	UPF1	95	94.300	Ficedula_albicollis
ENSXCOG00000005764	-	100	93.762	ENSFDAG00000014816	UPF1	99	93.282	Fukomys_damarensis
ENSXCOG00000005764	-	99	90.202	ENSFHEG00000006428	upf1	93	90.010	Fundulus_heteroclitus
ENSXCOG00000005764	-	91	98.711	ENSFHEG00000016276	-	95	98.711	Fundulus_heteroclitus
ENSXCOG00000005764	-	100	94.712	ENSGMOG00000007541	upf1	94	94.909	Gadus_morhua
ENSXCOG00000005764	-	100	94.762	ENSGALG00000003220	UPF1	92	94.762	Gallus_gallus
ENSXCOG00000005764	-	100	99.903	ENSGAFG00000004831	upf1	94	99.903	Gambusia_affinis
ENSXCOG00000005764	-	67	94.524	ENSGAFG00000015443	-	85	94.524	Gambusia_affinis
ENSXCOG00000005764	-	100	94.568	ENSGAGG00000022217	UPF1	93	94.568	Gopherus_agassizii
ENSXCOG00000005764	-	100	94.859	ENSGGOG00000002608	UPF1	98	94.859	Gorilla_gorilla
ENSXCOG00000005764	-	86	100.000	ENSHBUG00000008939	upf1	88	100.000	Haplochromis_burtoni
ENSXCOG00000005764	-	88	84.035	ENSHBUG00000014694	upf1	90	89.157	Haplochromis_burtoni
ENSXCOG00000005764	-	100	93.570	ENSHGLG00000010900	UPF1	92	93.570	Heterocephalus_glaber_female
ENSXCOG00000005764	-	100	91.939	ENSHGLG00100005904	UPF1	96	91.939	Heterocephalus_glaber_male
ENSXCOG00000005764	-	100	97.478	ENSHCOG00000008918	upf1	100	96.709	Hippocampus_comes
ENSXCOG00000005764	-	99	94.966	ENSIPUG00000005108	UPF1	94	94.482	Ictalurus_punctatus
ENSXCOG00000005764	-	100	94.859	ENSSTOG00000009196	UPF1	93	93.378	Ictidomys_tridecemlineatus
ENSXCOG00000005764	-	100	93.282	ENSJJAG00000023151	Upf1	93	92.802	Jaculus_jaculus
ENSXCOG00000005764	-	100	98.740	ENSKMAG00000004962	upf1	94	98.740	Kryptolebias_marmoratus
ENSXCOG00000005764	-	100	97.677	ENSLBEG00000027848	-	94	97.677	Labrus_bergylta
ENSXCOG00000005764	-	99	91.587	ENSLBEG00000014862	upf1	94	92.065	Labrus_bergylta
ENSXCOG00000005764	-	68	94.269	ENSLACG00000008482	UPF1	100	94.269	Latimeria_chalumnae
ENSXCOG00000005764	-	100	95.446	ENSLOCG00000002072	upf1	94	95.446	Lepisosteus_oculatus
ENSXCOG00000005764	-	100	93.186	ENSLAFG00000014963	UPF1	92	93.186	Loxodonta_africana
ENSXCOG00000005764	-	100	93.858	ENSMFAG00000037748	UPF1	93	93.858	Macaca_fascicularis
ENSXCOG00000005764	-	100	93.858	ENSMMUG00000023286	UPF1	93	93.858	Macaca_mulatta
ENSXCOG00000005764	-	100	93.858	ENSMNEG00000000046	UPF1	93	93.858	Macaca_nemestrina
ENSXCOG00000005764	-	100	93.858	ENSMLEG00000028404	UPF1	99	93.858	Mandrillus_leucophaeus
ENSXCOG00000005764	-	100	97.580	ENSMAMG00000006231	-	94	97.580	Mastacembelus_armatus
ENSXCOG00000005764	-	99	91.794	ENSMAMG00000006229	upf1	94	92.462	Mastacembelus_armatus
ENSXCOG00000005764	-	100	97.967	ENSMZEG00005016386	-	94	97.967	Maylandia_zebra
ENSXCOG00000005764	-	99	92.065	ENSMZEG00005003489	upf1	94	92.426	Maylandia_zebra
ENSXCOG00000005764	-	100	93.289	ENSMGAG00000004745	UPF1	99	93.289	Meleagris_gallopavo
ENSXCOG00000005764	-	100	93.186	ENSMAUG00000011398	Upf1	94	92.706	Mesocricetus_auratus
ENSXCOG00000005764	-	100	94.762	ENSMICG00000001659	UPF1	92	94.762	Microcebus_murinus
ENSXCOG00000005764	-	100	93.186	ENSMOCG00000005699	Upf1	93	92.706	Microtus_ochrogaster
ENSXCOG00000005764	-	100	95.736	ENSMMOG00000007537	-	99	95.736	Mola_mola
ENSXCOG00000005764	-	99	93.087	ENSMMOG00000007881	upf1	94	93.385	Mola_mola
ENSXCOG00000005764	-	100	94.859	ENSMODG00000003689	UPF1	94	94.859	Monodelphis_domestica
ENSXCOG00000005764	-	100	96.236	ENSMALG00000018100	-	94	96.236	Monopterus_albus
ENSXCOG00000005764	-	99	92.892	ENSMALG00000000144	upf1	94	92.892	Monopterus_albus
ENSXCOG00000005764	-	100	94.083	MGP_CAROLIEiJ_G0031142	Upf1	93	93.598	Mus_caroli
ENSXCOG00000005764	-	100	94.083	ENSMUSG00000058301	Upf1	93	93.598	Mus_musculus
ENSXCOG00000005764	-	100	94.083	MGP_PahariEiJ_G0021607	Upf1	93	93.598	Mus_pahari
ENSXCOG00000005764	-	100	94.083	MGP_SPRETEiJ_G0032260	Upf1	93	93.598	Mus_spretus
ENSXCOG00000005764	-	100	94.859	ENSMPUG00000015516	UPF1	92	94.859	Mustela_putorius_furo
ENSXCOG00000005764	-	100	94.665	ENSMLUG00000012122	UPF1	92	94.665	Myotis_lucifugus
ENSXCOG00000005764	-	100	93.090	ENSNGAG00000024107	Upf1	92	92.610	Nannospalax_galili
ENSXCOG00000005764	-	99	91.288	ENSNBRG00000000670	upf1	94	91.262	Neolamprologus_brichardi
ENSXCOG00000005764	-	99	96.990	ENSNBRG00000022069	-	100	96.990	Neolamprologus_brichardi
ENSXCOG00000005764	-	100	88.004	ENSNLEG00000006062	UPF1	99	88.004	Nomascus_leucogenys
ENSXCOG00000005764	-	82	88.650	ENSMEUG00000014146	-	75	88.650	Notamacropus_eugenii
ENSXCOG00000005764	-	100	87.488	ENSOPRG00000014018	UPF1	99	87.488	Ochotona_princeps
ENSXCOG00000005764	-	100	93.762	ENSODEG00000012426	UPF1	94	93.282	Octodon_degus
ENSXCOG00000005764	-	100	97.967	ENSONIG00000012729	-	94	97.967	Oreochromis_niloticus
ENSXCOG00000005764	-	99	92.256	ENSONIG00000010452	upf1	94	92.617	Oreochromis_niloticus
ENSXCOG00000005764	-	100	93.289	ENSOANG00000004568	UPF1	92	93.289	Ornithorhynchus_anatinus
ENSXCOG00000005764	-	100	97.578	ENSORLG00000008453	upf1	94	97.578	Oryzias_latipes
ENSXCOG00000005764	-	100	97.578	ENSORLG00020014758	upf1	94	97.578	Oryzias_latipes_hni
ENSXCOG00000005764	-	100	97.578	ENSORLG00015010165	upf1	100	93.281	Oryzias_latipes_hsok
ENSXCOG00000005764	-	100	97.771	ENSOMEG00000003665	upf1	94	97.771	Oryzias_melastigma
ENSXCOG00000005764	-	100	94.956	ENSOGAG00000012866	UPF1	92	94.956	Otolemur_garnettii
ENSXCOG00000005764	-	96	93.333	ENSOARG00000010739	UPF1	92	93.333	Ovis_aries
ENSXCOG00000005764	-	100	93.858	ENSPPAG00000043884	UPF1	95	93.858	Pan_paniscus
ENSXCOG00000005764	-	100	93.762	ENSPPRG00000023470	UPF1	92	93.762	Panthera_pardus
ENSXCOG00000005764	-	100	92.629	ENSPTIG00000010159	UPF1	99	92.629	Panthera_tigris_altaica
ENSXCOG00000005764	-	100	93.858	ENSPTRG00000010721	UPF1	93	93.858	Pan_troglodytes
ENSXCOG00000005764	-	100	93.858	ENSPANG00000008847	UPF1	93	93.858	Papio_anubis
ENSXCOG00000005764	-	91	95.101	ENSPKIG00000006069	upf1	89	96.104	Paramormyrops_kingsleyae
ENSXCOG00000005764	-	74	93.211	ENSPSIG00000009491	UPF1	100	93.211	Pelodiscus_sinensis
ENSXCOG00000005764	-	99	91.208	ENSPMGG00000017327	upf1	94	91.401	Periophthalmus_magnuspinnatus
ENSXCOG00000005764	-	100	93.186	ENSPEMG00000001085	Upf1	93	92.706	Peromyscus_maniculatus_bairdii
ENSXCOG00000005764	-	100	89.362	ENSPMAG00000001206	upf1	93	89.362	Petromyzon_marinus
ENSXCOG00000005764	-	100	94.859	ENSPCIG00000006156	UPF1	92	94.859	Phascolarctos_cinereus
ENSXCOG00000005764	-	100	99.805	ENSPLAG00000016232	-	94	99.805	Poecilia_latipinna
ENSXCOG00000005764	-	99	91.643	ENSPLAG00000018155	-	94	90.970	Poecilia_latipinna
ENSXCOG00000005764	-	99	92.256	ENSPMEG00000011443	-	94	92.121	Poecilia_mexicana
ENSXCOG00000005764	-	100	99.708	ENSPMEG00000016319	-	94	99.708	Poecilia_mexicana
ENSXCOG00000005764	-	100	99.514	ENSPREG00000011247	-	94	99.514	Poecilia_reticulata
ENSXCOG00000005764	-	99	92.123	ENSPREG00000009940	upf1	94	91.739	Poecilia_reticulata
ENSXCOG00000005764	-	100	88.580	ENSPPYG00000009752	UPF1	92	88.580	Pongo_abelii
ENSXCOG00000005764	-	70	98.653	ENSPCAG00000012962	UPF1	65	98.653	Procavia_capensis
ENSXCOG00000005764	-	100	93.762	ENSPCOG00000023813	UPF1	93	93.762	Propithecus_coquereli
ENSXCOG00000005764	-	66	100.000	ENSPVAG00000003183	UPF1	61	100.000	Pteropus_vampyrus
ENSXCOG00000005764	-	100	97.967	ENSPNYG00000016731	-	94	97.967	Pundamilia_nyererei
ENSXCOG00000005764	-	99	92.065	ENSPNYG00000003694	upf1	94	92.426	Pundamilia_nyererei
ENSXCOG00000005764	-	99	94.676	ENSPNAG00000025614	upf1	94	94.192	Pygocentrus_nattereri
ENSXCOG00000005764	-	100	94.083	ENSRNOG00000020134	Upf1	93	93.598	Rattus_norvegicus
ENSXCOG00000005764	-	100	91.459	ENSRBIG00000013894	UPF1	98	94.420	Rhinopithecus_bieti
ENSXCOG00000005764	-	100	93.858	ENSRROG00000040935	UPF1	98	94.420	Rhinopithecus_roxellana
ENSXCOG00000005764	-	79	57.038	YMR080C	NAM7	84	57.038	Saccharomyces_cerevisiae
ENSXCOG00000005764	-	100	93.858	ENSSBOG00000023632	UPF1	95	93.858	Saimiri_boliviensis_boliviensis
ENSXCOG00000005764	-	100	93.678	ENSSHAG00000010499	UPF1	99	93.678	Sarcophilus_harrisii
ENSXCOG00000005764	-	100	95.446	ENSSFOG00015021095	upf1	99	95.446	Scleropages_formosus
ENSXCOG00000005764	-	100	97.967	ENSSMAG00000021018	-	94	97.967	Scophthalmus_maximus
ENSXCOG00000005764	-	99	91.579	ENSSMAG00000005055	upf1	94	92.249	Scophthalmus_maximus
ENSXCOG00000005764	-	99	91.698	ENSSDUG00000013320	upf1	94	92.653	Seriola_dumerili
ENSXCOG00000005764	-	100	98.064	ENSSDUG00000009629	-	94	98.064	Seriola_dumerili
ENSXCOG00000005764	-	100	98.064	ENSSLDG00000006878	-	94	98.064	Seriola_lalandi_dorsalis
ENSXCOG00000005764	-	99	92.582	ENSSLDG00000020868	upf1	94	93.160	Seriola_lalandi_dorsalis
ENSXCOG00000005764	-	100	94.568	ENSSPUG00000010538	UPF1	93	94.568	Sphenodon_punctatus
ENSXCOG00000005764	-	99	90.768	ENSSPAG00000000003	upf1	94	91.059	Stegastes_partitus
ENSXCOG00000005764	-	100	98.351	ENSSPAG00000011521	-	94	98.351	Stegastes_partitus
ENSXCOG00000005764	-	100	94.762	ENSSSCG00000039301	UPF1	99	94.762	Sus_scrofa
ENSXCOG00000005764	-	81	88.980	ENSTGUG00000001057	UPF1	87	94.737	Taeniopygia_guttata
ENSXCOG00000005764	-	99	93.385	ENSTRUG00000000150	upf1	94	93.385	Takifugu_rubripes
ENSXCOG00000005764	-	100	96.990	ENSTRUG00000005131	-	94	96.990	Takifugu_rubripes
ENSXCOG00000005764	-	100	90.883	ENSTTRG00000011544	UPF1	92	90.883	Tursiops_truncatus
ENSXCOG00000005764	-	100	94.762	ENSUAMG00000007093	UPF1	92	94.762	Ursus_americanus
ENSXCOG00000005764	-	100	94.762	ENSUMAG00000006652	UPF1	99	94.922	Ursus_maritimus
ENSXCOG00000005764	-	100	94.859	ENSVVUG00000007797	UPF1	92	94.859	Vulpes_vulpes
ENSXCOG00000005764	-	100	80.670	ENSXETG00000013602	upf1	92	80.670	Xenopus_tropicalis
ENSXCOG00000005764	-	100	99.903	ENSXMAG00000002540	-	94	99.903	Xiphophorus_maculatus
ENSXCOG00000005764	-	99	92.308	ENSXMAG00000001703	-	94	92.210	Xiphophorus_maculatus