EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSXCOG00000005927 (Gene tree)
Gene ID: -
Gene Symbol: -
Alias: -
Full Name: -
Gene Type: protein_coding
Species: Xiphophorus_couchianus
Status: putative
Strand: Minus strand
Length: 11364 bases
Position: chrKQ557202.1:15901899-15913262
Accession: -
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSXCOP00000007748	RIO1	PF01163.22	4.4e-06	1	1
ENSXCOP00000007751	RIO1	PF01163.22	1.1e-05	1	1
ENSXCOP00000007708	RIO1	PF01163.22	1.6e-05	1	1
ENSXCOP00000007746	RIO1	PF01163.22	3e-05	1	1
ENSXCOP00000007727	RIO1	PF01163.22	4e-05	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSXCOT00000007839	-	894	-	ENSXCOP00000007742	297 (aa)	-	-
ENSXCOT00000007835	-	903	-	ENSXCOP00000007738	300 (aa)	-	-
ENSXCOT00000007830	-	948	-	ENSXCOP00000007733	315 (aa)	-	-
ENSXCOT00000007846	-	852	-	ENSXCOP00000007748	283 (aa)	-	-
ENSXCOT00000007843	-	927	-	ENSXCOP00000007746	308 (aa)	-	-
ENSXCOT00000007824	-	2238	-	ENSXCOP00000007727	745 (aa)	-	-
ENSXCOT00000007805	-	1056	-	ENSXCOP00000007708	351 (aa)	-	-
ENSXCOT00000007849	-	933	-	ENSXCOP00000007751	310 (aa)	-	-

Gene Model

Click here to download ENSXCOG00000005927's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSXCOG00000005927's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSXCOG00000005927	-	89	40.767	ENSXCOG00000020035	dapk2b	85	40.000
ENSXCOG00000005927	-	82	42.259	ENSXCOG00000018726	-	59	41.085
ENSXCOG00000005927	-	73	30.622	ENSXCOG00000003678	nuak2	85	31.556
ENSXCOG00000005927	-	86	37.295	ENSXCOG00000015517	camk1gb	65	37.234
ENSXCOG00000005927	-	79	31.193	ENSXCOG00000005797	rps6ka4	62	30.041

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSXCOG00000005927	-	86	68.773	ENSAPOG00000023231	mylk5	94	49.086	Acanthochromis_polyacanthus
ENSXCOG00000005927	-	86	84.387	ENSAPOG00000019520	-	94	67.453	Acanthochromis_polyacanthus
ENSXCOG00000005927	-	86	84.015	ENSACIG00000024477	-	93	67.059	Amphilophus_citrinellus
ENSXCOG00000005927	-	86	68.773	ENSAOCG00000014130	mylk5	97	52.749	Amphiprion_ocellaris
ENSXCOG00000005927	-	86	83.643	ENSAOCG00000024465	-	94	68.075	Amphiprion_ocellaris
ENSXCOG00000005927	-	86	68.773	ENSAPEG00000017851	mylk5	97	52.818	Amphiprion_percula
ENSXCOG00000005927	-	86	83.643	ENSAPEG00000014652	-	93	70.822	Amphiprion_percula
ENSXCOG00000005927	-	86	69.517	ENSATEG00000002426	mylk5	93	53.150	Anabas_testudineus
ENSXCOG00000005927	-	86	83.271	ENSACLG00000007583	-	94	68.063	Astatotilapia_calliptera
ENSXCOG00000005927	-	89	66.426	ENSACLG00000003301	mylk5	99	48.599	Astatotilapia_calliptera
ENSXCOG00000005927	-	86	71.269	ENSAMXG00000019493	-	90	58.079	Astyanax_mexicanus
ENSXCOG00000005927	-	86	67.658	ENSCSEG00000017281	mylk5	89	53.738	Cynoglossus_semilaevis
ENSXCOG00000005927	-	89	67.754	ENSCVAG00000022813	mylk5	96	51.613	Cyprinodon_variegatus
ENSXCOG00000005927	-	98	83.002	ENSCVAG00000022136	-	90	83.002	Cyprinodon_variegatus
ENSXCOG00000005927	-	85	91.667	ENSFHEG00000010974	-	94	75.649	Fundulus_heteroclitus
ENSXCOG00000005927	-	89	66.667	ENSFHEG00000011638	-	95	52.375	Fundulus_heteroclitus
ENSXCOG00000005927	-	89	64.855	ENSGAFG00000000269	mylk5	97	49.499	Gambusia_affinis
ENSXCOG00000005927	-	89	65.704	ENSGACG00000008527	mylk5	99	52.624	Gasterosteus_aculeatus
ENSXCOG00000005927	-	90	79.078	ENSGACG00000002123	-	99	83.838	Gasterosteus_aculeatus
ENSXCOG00000005927	-	89	66.787	ENSHBUG00000002257	mylk5	94	50.763	Haplochromis_burtoni
ENSXCOG00000005927	-	86	83.643	ENSHBUG00000016459	-	95	66.451	Haplochromis_burtoni
ENSXCOG00000005927	-	86	74.721	ENSHCOG00000015710	-	87	62.631	Hippocampus_comes
ENSXCOG00000005927	-	89	64.621	ENSIPUG00000012659	mylk5	96	50.196	Ictalurus_punctatus
ENSXCOG00000005927	-	86	82.528	ENSKMAG00000016742	-	94	66.543	Kryptolebias_marmoratus
ENSXCOG00000005927	-	89	66.667	ENSKMAG00000019605	mylk5	95	49.874	Kryptolebias_marmoratus
ENSXCOG00000005927	-	86	69.517	ENSLBEG00000003526	mylk5	94	52.949	Labrus_bergylta
ENSXCOG00000005927	-	86	80.597	ENSLBEG00000004115	-	92	66.536	Labrus_bergylta
ENSXCOG00000005927	-	85	69.663	ENSMAMG00000000610	mylk5	95	49.937	Mastacembelus_armatus
ENSXCOG00000005927	-	89	66.426	ENSMZEG00005022663	mylk5	96	50.765	Maylandia_zebra
ENSXCOG00000005927	-	89	65.217	ENSMMOG00000020584	mylk5	96	50.717	Mola_mola
ENSXCOG00000005927	-	86	79.554	ENSMALG00000022416	-	89	65.255	Monopterus_albus
ENSXCOG00000005927	-	85	70.037	ENSMALG00000004945	mylk5	86	56.031	Monopterus_albus
ENSXCOG00000005927	-	89	66.426	ENSONIG00000001203	mylk5	99	59.161	Oreochromis_niloticus
ENSXCOG00000005927	-	89	66.426	ENSONIG00000019875	-	99	59.161	Oreochromis_niloticus
ENSXCOG00000005927	-	85	85.227	ENSONIG00000016230	-	94	66.415	Oreochromis_niloticus
ENSXCOG00000005927	-	89	63.768	ENSPFOG00000013597	mylk5	94	48.941	Poecilia_formosa
ENSXCOG00000005927	-	89	63.406	ENSPLAG00000023779	mylk5	95	49.611	Poecilia_latipinna
ENSXCOG00000005927	-	89	64.493	ENSPMEG00000023897	mylk5	95	49.483	Poecilia_mexicana
ENSXCOG00000005927	-	89	63.768	ENSPREG00000009707	mylk5	96	48.787	Poecilia_reticulata
ENSXCOG00000005927	-	98	82.776	ENSPREG00000003222	-	94	82.776	Poecilia_reticulata
ENSXCOG00000005927	-	89	66.787	ENSPNYG00000010046	mylk5	96	49.012	Pundamilia_nyererei
ENSXCOG00000005927	-	90	81.720	ENSPNYG00000019509	-	82	83.860	Pundamilia_nyererei
ENSXCOG00000005927	-	85	71.536	ENSSFOG00015004885	-	91	57.846	Scleropages_formosus
ENSXCOG00000005927	-	99	66.294	ENSSMAG00000020328	-	96	66.294	Scophthalmus_maximus
ENSXCOG00000005927	-	85	70.037	ENSSMAG00000006784	mylk5	94	49.142	Scophthalmus_maximus
ENSXCOG00000005927	-	85	82.022	ENSSDUG00000020847	-	93	68.066	Seriola_dumerili
ENSXCOG00000005927	-	85	82.022	ENSSLDG00000019897	-	93	67.430	Seriola_lalandi_dorsalis
ENSXCOG00000005927	-	89	66.065	ENSSPAG00000020815	mylk5	96	53.194	Stegastes_partitus
ENSXCOG00000005927	-	86	83.643	ENSSPAG00000019068	-	94	67.476	Stegastes_partitus
ENSXCOG00000005927	-	89	64.493	ENSTRUG00000015150	mylk5	86	52.287	Takifugu_rubripes
ENSXCOG00000005927	-	89	64.855	ENSTNIG00000011699	mylk5	99	51.495	Tetraodon_nigroviridis
ENSXCOG00000005927	-	86	76.952	ENSTNIG00000004928	-	100	67.612	Tetraodon_nigroviridis
ENSXCOG00000005927	-	85	97.727	ENSXMAG00000015589	-	84	90.483	Xiphophorus_maculatus
ENSXCOG00000005927	-	89	64.130	ENSXMAG00000007789	mylk5	95	48.171	Xiphophorus_maculatus