EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: ENSXCOG00000005958 (Gene tree)
Gene ID: -
Gene Symbol: npm1a
Alias: npm1|sb:cb487
Full Name: nucleophosmin 1a
Gene Type: protein_coding
Species: Xiphophorus_couchianus
Status: putative
Strand: Minus strand
Length: 5250 bases
Position: chrKQ557203.1:12479619-12484868
Accession: ZDB-GENE-021028-1
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSXCOP00000007765	Nucleoplasmin	PF03066.15	4.2e-32	1	1
ENSXCOP00000007767	Nucleoplasmin	PF03066.15	6.5e-32	1	1
ENSXCOP00000007760	Nucleoplasmin	PF03066.15	1.2e-27	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSXCOT00000007865	-	819	-	ENSXCOP00000007767	272 (aa)	-	-
ENSXCOT00000007863	-	825	-	ENSXCOP00000007765	274 (aa)	-	-
ENSXCOT00000007858	-	813	-	ENSXCOP00000007760	271 (aa)	-	-

Gene Model

Click here to download ENSXCOG00000005958's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSXCOG00000005958's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSXCOG00000005958	npm1a	100	63.103	ENSAPOG00000002813	npm1a	99	60.870	Acanthochromis_polyacanthus
ENSXCOG00000005958	npm1a	100	69.314	ENSACIG00000014201	npm1a	99	68.953	Amphilophus_citrinellus
ENSXCOG00000005958	npm1a	96	62.548	ENSAOCG00000004978	npm1a	100	65.000	Amphiprion_ocellaris
ENSXCOG00000005958	npm1a	100	63.889	ENSAPEG00000008594	npm1a	99	62.290	Amphiprion_percula
ENSXCOG00000005958	npm1a	99	67.119	ENSATEG00000008885	npm1a	99	62.581	Anabas_testudineus
ENSXCOG00000005958	npm1a	94	71.923	ENSACLG00000008376	npm1a	94	71.923	Astatotilapia_calliptera
ENSXCOG00000005958	npm1a	100	46.429	ENSAMXG00000010155	npm1a	97	50.192	Astyanax_mexicanus
ENSXCOG00000005958	npm1a	98	59.551	ENSCSEG00000011165	npm1a	98	59.551	Cynoglossus_semilaevis
ENSXCOG00000005958	npm1a	100	68.070	ENSCVAG00000008960	npm1a	99	67.347	Cyprinodon_variegatus
ENSXCOG00000005958	npm1a	100	58.484	ENSDARG00000014329	npm1a	95	67.702	Danio_rerio
ENSXCOG00000005958	npm1a	97	34.432	ENSEBUG00000012753	npm1a	63	45.614	Eptatretus_burgeri
ENSXCOG00000005958	npm1a	99	61.268	ENSELUG00000013705	npm1a	99	57.823	Esox_lucius
ENSXCOG00000005958	npm1a	100	71.479	ENSFHEG00000012496	npm1a	99	66.107	Fundulus_heteroclitus
ENSXCOG00000005958	npm1a	100	82.168	ENSGAFG00000013059	npm1a	93	83.566	Gambusia_affinis
ENSXCOG00000005958	npm1a	99	62.500	ENSGACG00000020319	npm1a	99	58.983	Gasterosteus_aculeatus
ENSXCOG00000005958	npm1a	100	63.036	ENSHBUG00000000776	npm1a	99	59.937	Haplochromis_burtoni
ENSXCOG00000005958	npm1a	99	51.429	ENSHCOG00000001059	npm1a	98	52.364	Hippocampus_comes
ENSXCOG00000005958	npm1a	99	55.442	ENSIPUG00000019452	npm1	100	53.465	Ictalurus_punctatus
ENSXCOG00000005958	npm1a	100	69.675	ENSKMAG00000010709	npm1a	99	65.636	Kryptolebias_marmoratus
ENSXCOG00000005958	npm1a	99	64.460	ENSLBEG00000008793	npm1a	99	59.933	Labrus_bergylta
ENSXCOG00000005958	npm1a	89	51.481	ENSLOCG00000009683	npm1a	99	51.111	Lepisosteus_oculatus
ENSXCOG00000005958	npm1a	99	66.316	ENSMAMG00000009344	npm1a	82	63.514	Mastacembelus_armatus
ENSXCOG00000005958	npm1a	94	70.817	ENSMZEG00005013717	npm1a	94	70.817	Maylandia_zebra
ENSXCOG00000005958	npm1a	100	64.184	ENSMMOG00000007980	npm1a	99	64.184	Mola_mola
ENSXCOG00000005958	npm1a	99	67.247	ENSMALG00000001146	npm1a	99	64.407	Monopterus_albus
ENSXCOG00000005958	npm1a	100	58.824	ENSNBRG00000013172	npm1a	99	57.190	Neolamprologus_brichardi
ENSXCOG00000005958	npm1a	99	63.763	ENSONIG00000001860	npm1a	98	61.258	Oreochromis_niloticus
ENSXCOG00000005958	npm1a	100	65.965	ENSORLG00000010179	npm1a	99	63.265	Oryzias_latipes
ENSXCOG00000005958	npm1a	100	67.606	ENSORLG00020020817	npm1a	99	62.799	Oryzias_latipes_hni
ENSXCOG00000005958	npm1a	100	65.965	ENSORLG00015003439	npm1a	99	63.265	Oryzias_latipes_hsok
ENSXCOG00000005958	npm1a	100	67.719	ENSOMEG00000007083	npm1a	99	62.585	Oryzias_melastigma
ENSXCOG00000005958	npm1a	100	50.000	ENSPKIG00000023943	npm1a	99	47.351	Paramormyrops_kingsleyae
ENSXCOG00000005958	npm1a	100	53.430	ENSPMGG00000011716	npm1a	99	52.941	Periophthalmus_magnuspinnatus
ENSXCOG00000005958	npm1a	100	82.686	ENSPFOG00000019173	npm1a	93	84.452	Poecilia_formosa
ENSXCOG00000005958	npm1a	100	86.071	ENSPLAG00000001093	npm1a	93	87.143	Poecilia_latipinna
ENSXCOG00000005958	npm1a	100	82.686	ENSPMEG00000012523	npm1a	93	84.452	Poecilia_mexicana
ENSXCOG00000005958	npm1a	100	80.702	ENSPREG00000001647	npm1a	99	76.254	Poecilia_reticulata
ENSXCOG00000005958	npm1a	100	64.430	ENSPNYG00000019321	npm1a	99	60.897	Pundamilia_nyererei
ENSXCOG00000005958	npm1a	100	52.595	ENSPNAG00000026891	npm1a	99	51.351	Pygocentrus_nattereri
ENSXCOG00000005958	npm1a	100	58.156	ENSSFOG00015007074	npm1a	99	56.446	Scleropages_formosus
ENSXCOG00000005958	npm1a	100	66.434	ENSSMAG00000019090	npm1a	99	63.729	Scophthalmus_maximus
ENSXCOG00000005958	npm1a	100	65.157	ENSSDUG00000015609	npm1a	99	62.500	Seriola_dumerili
ENSXCOG00000005958	npm1a	100	64.057	ENSSLDG00000017849	npm1a	99	62.712	Seriola_lalandi_dorsalis
ENSXCOG00000005958	npm1a	98	65.299	ENSSPAG00000021660	npm1a	98	64.552	Stegastes_partitus
ENSXCOG00000005958	npm1a	100	65.292	ENSTRUG00000024003	npm1a	99	62.667	Takifugu_rubripes
ENSXCOG00000005958	npm1a	100	64.057	ENSTNIG00000010773	npm1a	99	63.230	Tetraodon_nigroviridis
ENSXCOG00000005958	npm1a	100	93.333	ENSXMAG00000000396	npm1a	93	93.333	Xiphophorus_maculatus