EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSXCOG00000005968 (Gene tree)
Gene ID: -
Gene Symbol: zgc:110045
Alias: -
Full Name: zgc:110045
Gene Type: protein_coding
Species: Xiphophorus_couchianus
Status: putative
Strand: Minus strand
Length: 3312 bases
Position: chrKQ557215.1:2477716-2481027
Accession: ZDB-GENE-050706-149
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSXCOP00000007770	KH_1	PF00013.29	2.9e-32	1	2
ENSXCOP00000007770	KH_1	PF00013.29	2.9e-32	2	2
ENSXCOP00000007770	KH_2	PF07650.17	4.9e-09	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSXCOT00000007868	-	567	-	ENSXCOP00000007770	188 (aa)	-	-

Gene Model

Click here to download ENSXCOG00000005968's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSXCOG00000005968's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSXCOG00000005968	zgc:110045	66	76.800	ENSXCOG00000017325	pcbp4	53	76.800
ENSXCOG00000005968	zgc:110045	89	31.731	ENSXCOG00000001806	hnrpkl	64	31.731
ENSXCOG00000005968	zgc:110045	91	33.562	ENSXCOG00000001170	igf2bp2b	61	33.562
ENSXCOG00000005968	zgc:110045	79	30.137	ENSXCOG00000009912	-	60	30.137
ENSXCOG00000005968	zgc:110045	82	76.970	ENSXCOG00000020481	pcbp3	63	76.970
ENSXCOG00000005968	zgc:110045	87	67.033	ENSXCOG00000000111	-	89	67.416
ENSXCOG00000005968	zgc:110045	80	38.462	ENSXCOG00000005140	hnrnpk	50	38.462
ENSXCOG00000005968	zgc:110045	82	78.065	ENSXCOG00000013797	PCBP2	92	78.065
ENSXCOG00000005968	zgc:110045	76	35.821	ENSXCOG00000009738	NOVA1	55	35.821

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSXCOG00000005968	zgc:110045	85	77.976	ENSG00000183570	PCBP3	89	77.976	Homo_sapiens
ENSXCOG00000005968	zgc:110045	87	93.567	ENSAPOG00000023735	zgc:110045	94	93.567	Acanthochromis_polyacanthus
ENSXCOG00000005968	zgc:110045	87	96.933	ENSACIG00000002577	zgc:110045	85	87.845	Amphilophus_citrinellus
ENSXCOG00000005968	zgc:110045	87	94.643	ENSAOCG00000005266	zgc:110045	80	94.643	Amphiprion_ocellaris
ENSXCOG00000005968	zgc:110045	96	92.398	ENSAPEG00000000729	zgc:110045	79	92.398	Amphiprion_percula
ENSXCOG00000005968	zgc:110045	89	82.000	ENSATEG00000011191	zgc:110045	72	82.000	Anabas_testudineus
ENSXCOG00000005968	zgc:110045	96	85.714	ENSACLG00000019285	zgc:110045	79	85.714	Astatotilapia_calliptera
ENSXCOG00000005968	zgc:110045	82	83.333	ENSBTAG00000030775	PCBP3	63	83.333	Bos_taurus
ENSXCOG00000005968	zgc:110045	82	80.247	ENSCAFG00000011907	PCBP3	69	80.247	Canis_familiaris
ENSXCOG00000005968	zgc:110045	82	83.333	ENSCHIG00000015841	PCBP3	61	83.333	Capra_hircus
ENSXCOG00000005968	zgc:110045	82	84.416	ENSTSYG00000005254	PCBP3	63	84.416	Carlito_syrichta
ENSXCOG00000005968	zgc:110045	82	57.419	ENSCAPG00000006767	PCBP3	53	57.419	Cavia_aperea
ENSXCOG00000005968	zgc:110045	82	80.247	ENSCPOG00000003648	PCBP3	62	80.247	Cavia_porcellus
ENSXCOG00000005968	zgc:110045	85	77.976	ENSCCAG00000024561	PCBP3	83	77.976	Cebus_capucinus
ENSXCOG00000005968	zgc:110045	85	77.976	ENSCATG00000038419	PCBP3	82	77.976	Cercocebus_atys
ENSXCOG00000005968	zgc:110045	82	80.247	ENSCLAG00000006667	PCBP3	69	80.247	Chinchilla_lanigera
ENSXCOG00000005968	zgc:110045	85	77.976	ENSCANG00000026757	PCBP3	83	77.976	Colobus_angolensis_palliatus
ENSXCOG00000005968	zgc:110045	82	80.247	ENSCGRG00001006836	Pcbp3	69	80.247	Cricetulus_griseus_chok1gshd
ENSXCOG00000005968	zgc:110045	82	80.247	ENSCGRG00000001837	Pcbp3	69	80.247	Cricetulus_griseus_crigri
ENSXCOG00000005968	zgc:110045	88	92.398	ENSCSEG00000010020	zgc:110045	99	84.127	Cynoglossus_semilaevis
ENSXCOG00000005968	zgc:110045	87	95.238	ENSCVAG00000004726	zgc:110045	77	95.238	Cyprinodon_variegatus
ENSXCOG00000005968	zgc:110045	87	79.532	ENSDARG00000057141	zgc:110045	76	79.532	Danio_rerio
ENSXCOG00000005968	zgc:110045	82	80.247	ENSDNOG00000049518	PCBP3	60	80.247	Dasypus_novemcinctus
ENSXCOG00000005968	zgc:110045	82	80.745	ENSDORG00000003640	Pcbp3	65	80.745	Dipodomys_ordii
ENSXCOG00000005968	zgc:110045	90	71.348	ENSEBUG00000009697	zgc:110045	69	79.856	Eptatretus_burgeri
ENSXCOG00000005968	zgc:110045	82	80.247	ENSEASG00005007068	PCBP3	64	80.247	Equus_asinus_asinus
ENSXCOG00000005968	zgc:110045	85	77.976	ENSECAG00000012413	PCBP3	64	80.247	Equus_caballus
ENSXCOG00000005968	zgc:110045	85	77.976	ENSFCAG00000014812	PCBP3	83	77.976	Felis_catus
ENSXCOG00000005968	zgc:110045	82	80.247	ENSFDAG00000009117	PCBP3	64	80.247	Fukomys_damarensis
ENSXCOG00000005968	zgc:110045	89	93.143	ENSFHEG00000018838	-	78	93.567	Fundulus_heteroclitus
ENSXCOG00000005968	zgc:110045	82	89.571	ENSGMOG00000005953	zgc:110045	50	89.571	Gadus_morhua
ENSXCOG00000005968	zgc:110045	87	95.322	ENSGAFG00000017864	zgc:110045	75	95.322	Gambusia_affinis
ENSXCOG00000005968	zgc:110045	95	82.888	ENSGACG00000003044	zgc:110045	94	82.888	Gasterosteus_aculeatus
ENSXCOG00000005968	zgc:110045	85	77.976	ENSGGOG00000003683	PCBP3	83	77.976	Gorilla_gorilla
ENSXCOG00000005968	zgc:110045	96	85.714	ENSHBUG00000012495	zgc:110045	94	85.714	Haplochromis_burtoni
ENSXCOG00000005968	zgc:110045	82	82.692	ENSHGLG00000018620	PCBP3	62	82.692	Heterocephalus_glaber_female
ENSXCOG00000005968	zgc:110045	82	82.692	ENSHGLG00100013590	PCBP3	62	82.692	Heterocephalus_glaber_male
ENSXCOG00000005968	zgc:110045	96	82.105	ENSHCOG00000000818	zgc:110045	87	82.105	Hippocampus_comes
ENSXCOG00000005968	zgc:110045	87	77.907	ENSIPUG00000003932	zgc:110045	64	77.907	Ictalurus_punctatus
ENSXCOG00000005968	zgc:110045	82	80.247	ENSSTOG00000007178	PCBP3	62	80.247	Ictidomys_tridecemlineatus
ENSXCOG00000005968	zgc:110045	82	81.250	ENSJJAG00000021192	Pcbp3	59	81.250	Jaculus_jaculus
ENSXCOG00000005968	zgc:110045	89	98.824	ENSKMAG00000016179	-	74	98.824	Kryptolebias_marmoratus
ENSXCOG00000005968	zgc:110045	87	92.398	ENSLBEG00000023074	zgc:110045	80	99.281	Labrus_bergylta
ENSXCOG00000005968	zgc:110045	82	80.745	ENSLAFG00000020835	PCBP3	68	80.745	Loxodonta_africana
ENSXCOG00000005968	zgc:110045	85	77.976	ENSMFAG00000034574	PCBP3	83	77.976	Macaca_fascicularis
ENSXCOG00000005968	zgc:110045	85	77.976	ENSMMUG00000003825	PCBP3	83	77.976	Macaca_mulatta
ENSXCOG00000005968	zgc:110045	85	77.976	ENSMNEG00000035551	PCBP3	83	77.976	Macaca_nemestrina
ENSXCOG00000005968	zgc:110045	85	77.976	ENSMLEG00000038785	PCBP3	83	77.976	Mandrillus_leucophaeus
ENSXCOG00000005968	zgc:110045	96	83.069	ENSMAMG00000014389	zgc:110045	97	83.069	Mastacembelus_armatus
ENSXCOG00000005968	zgc:110045	96	85.714	ENSMZEG00005011785	zgc:110045	79	85.714	Maylandia_zebra
ENSXCOG00000005968	zgc:110045	82	84.416	ENSMAUG00000007036	Pcbp3	68	84.416	Mesocricetus_auratus
ENSXCOG00000005968	zgc:110045	85	77.381	ENSMICG00000012679	PCBP3	83	77.381	Microcebus_murinus
ENSXCOG00000005968	zgc:110045	82	80.247	ENSMOCG00000016127	Pcbp3	69	80.247	Microtus_ochrogaster
ENSXCOG00000005968	zgc:110045	87	95.092	ENSMMOG00000008399	zgc:110045	80	95.092	Mola_mola
ENSXCOG00000005968	zgc:110045	96	86.188	ENSMALG00000008763	zgc:110045	91	86.188	Monopterus_albus
ENSXCOG00000005968	zgc:110045	82	80.247	MGP_CAROLIEiJ_G0015475	Pcbp3	72	80.247	Mus_caroli
ENSXCOG00000005968	zgc:110045	82	80.247	ENSMUSG00000001120	Pcbp3	72	80.247	Mus_musculus
ENSXCOG00000005968	zgc:110045	82	80.247	MGP_PahariEiJ_G0030889	Pcbp3	72	80.247	Mus_pahari
ENSXCOG00000005968	zgc:110045	82	80.247	MGP_SPRETEiJ_G0016288	Pcbp3	72	80.247	Mus_spretus
ENSXCOG00000005968	zgc:110045	82	80.247	ENSMLUG00000003074	PCBP3	69	80.247	Myotis_lucifugus
ENSXCOG00000005968	zgc:110045	82	80.247	ENSNGAG00000005416	Pcbp3	69	80.247	Nannospalax_galili
ENSXCOG00000005968	zgc:110045	96	85.714	ENSNBRG00000017646	zgc:110045	79	85.714	Neolamprologus_brichardi
ENSXCOG00000005968	zgc:110045	85	77.976	ENSNLEG00000002639	PCBP3	83	77.976	Nomascus_leucogenys
ENSXCOG00000005968	zgc:110045	82	84.416	ENSODEG00000012873	PCBP3	61	84.416	Octodon_degus
ENSXCOG00000005968	zgc:110045	88	93.567	ENSONIG00000010370	zgc:110045	84	93.567	Oreochromis_niloticus
ENSXCOG00000005968	zgc:110045	82	80.247	ENSOANG00000006265	PCBP3	57	80.247	Ornithorhynchus_anatinus
ENSXCOG00000005968	zgc:110045	87	97.546	ENSORLG00020003139	zgc:110045	69	97.546	Oryzias_latipes_hni
ENSXCOG00000005968	zgc:110045	86	78.488	ENSOARG00000012704	PCBP3	63	78.488	Ovis_aries
ENSXCOG00000005968	zgc:110045	85	77.976	ENSPPAG00000021940	PCBP3	83	77.976	Pan_paniscus
ENSXCOG00000005968	zgc:110045	85	77.976	ENSPPRG00000003933	PCBP3	83	77.976	Panthera_pardus
ENSXCOG00000005968	zgc:110045	76	74.783	ENSPTIG00000012038	PCBP3	55	74.783	Panthera_tigris_altaica
ENSXCOG00000005968	zgc:110045	78	49.007	ENSPTRG00000014010	PCBP3	71	47.403	Pan_troglodytes
ENSXCOG00000005968	zgc:110045	85	77.976	ENSPANG00000023631	PCBP3	83	77.976	Papio_anubis
ENSXCOG00000005968	zgc:110045	86	62.577	ENSPMGG00000022531	-	76	62.577	Periophthalmus_magnuspinnatus
ENSXCOG00000005968	zgc:110045	88	84.431	ENSPMGG00000021588	-	54	84.431	Periophthalmus_magnuspinnatus
ENSXCOG00000005968	zgc:110045	82	84.416	ENSPEMG00000000587	Pcbp3	68	84.416	Peromyscus_maniculatus_bairdii
ENSXCOG00000005968	zgc:110045	86	66.387	ENSPMAG00000004719	zgc:110045	93	66.387	Petromyzon_marinus
ENSXCOG00000005968	zgc:110045	85	95.238	ENSPFOG00000002348	zgc:110045	93	95.238	Poecilia_formosa
ENSXCOG00000005968	zgc:110045	87	99.387	ENSPLAG00000017488	zgc:110045	74	99.387	Poecilia_latipinna
ENSXCOG00000005968	zgc:110045	87	95.322	ENSPMEG00000012762	zgc:110045	90	93.529	Poecilia_mexicana
ENSXCOG00000005968	zgc:110045	96	94.737	ENSPREG00000001797	zgc:110045	80	94.737	Poecilia_reticulata
ENSXCOG00000005968	zgc:110045	74	84.173	ENSPPYG00000011525	-	51	84.173	Pongo_abelii
ENSXCOG00000005968	zgc:110045	85	77.381	ENSPCOG00000013797	PCBP3	83	77.381	Propithecus_coquereli
ENSXCOG00000005968	zgc:110045	96	88.950	ENSPNYG00000004637	zgc:110045	85	88.950	Pundamilia_nyererei
ENSXCOG00000005968	zgc:110045	97	73.684	ENSPNAG00000004501	zgc:110045	85	73.684	Pygocentrus_nattereri
ENSXCOG00000005968	zgc:110045	85	77.976	ENSRROG00000034567	PCBP3	83	77.976	Rhinopithecus_roxellana
ENSXCOG00000005968	zgc:110045	85	77.976	ENSSBOG00000005789	PCBP3	83	77.976	Saimiri_boliviensis_boliviensis
ENSXCOG00000005968	zgc:110045	87	93.567	ENSSMAG00000013541	zgc:110045	72	93.567	Scophthalmus_maximus
ENSXCOG00000005968	zgc:110045	89	83.000	ENSSDUG00000019371	zgc:110045	67	83.000	Seriola_dumerili
ENSXCOG00000005968	zgc:110045	96	85.185	ENSSLDG00000021064	zgc:110045	74	85.185	Seriola_lalandi_dorsalis
ENSXCOG00000005968	zgc:110045	73	79.562	ENSSARG00000007629	-	68	79.562	Sorex_araneus
ENSXCOG00000005968	zgc:110045	87	93.567	ENSSPAG00000000563	zgc:110045	94	93.567	Stegastes_partitus
ENSXCOG00000005968	zgc:110045	82	80.247	ENSSSCG00000023041	PCBP3	64	80.247	Sus_scrofa
ENSXCOG00000005968	zgc:110045	90	90.058	ENSTRUG00000017789	zgc:110045	84	90.058	Takifugu_rubripes
ENSXCOG00000005968	zgc:110045	88	78.090	ENSTNIG00000003546	zgc:110045	88	78.090	Tetraodon_nigroviridis
ENSXCOG00000005968	zgc:110045	82	57.407	ENSTBEG00000011882	-	51	58.025	Tupaia_belangeri
ENSXCOG00000005968	zgc:110045	82	84.416	ENSUAMG00000006491	PCBP3	92	80.147	Ursus_americanus
ENSXCOG00000005968	zgc:110045	84	84.076	ENSUMAG00000025403	PCBP3	70	84.076	Ursus_maritimus
ENSXCOG00000005968	zgc:110045	96	95.322	ENSXMAG00000008030	zgc:110045	79	95.322	Xiphophorus_maculatus