EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSXCOG00000006101 (Gene tree)
Gene ID: -
Gene Symbol: prpf4
Alias: mg:ab03a02|zgc:65943
Full Name: PRP4 pre-mRNA processing factor 4 homolog (yeast)
Gene Type: protein_coding
Species: Xiphophorus_couchianus
Status: putative
Strand: Plus strand
Length: 12483 bases
Position: chrKQ557225.1:37415703-37428185
Accession: ZDB-GENE-030131-5143
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSXCOP00000007951	RVT_1	PF00078.27	3.5e-08	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSXCOT00000008051	-	288	-	ENSXCOP00000007953	95 (aa)	-	-
ENSXCOT00000008049	-	1143	-	ENSXCOP00000007951	380 (aa)	-	-

Gene Model

Click here to download ENSXCOG00000006101's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSXCOG00000006101's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSXCOG00000006101	prpf4	66	31.206	ENSXCOG00000010277	tbl3	63	31.206

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSXCOG00000006101	prpf4	93	59.653	ENSG00000136875	PRPF4	69	58.056	Homo_sapiens
ENSXCOG00000006101	prpf4	86	65.183	ENSAPOG00000014132	prpf4	73	64.560	Acanthochromis_polyacanthus
ENSXCOG00000006101	prpf4	93	59.360	ENSAMEG00000013048	PRPF4	67	58.056	Ailuropoda_melanoleuca
ENSXCOG00000006101	prpf4	93	67.482	ENSACIG00000005579	prpf4	70	64.286	Amphilophus_citrinellus
ENSXCOG00000006101	prpf4	93	73.641	ENSAOCG00000005457	prpf4	78	73.641	Amphiprion_ocellaris
ENSXCOG00000006101	prpf4	93	67.327	ENSAPEG00000000776	prpf4	70	64.903	Amphiprion_percula
ENSXCOG00000006101	prpf4	93	66.748	ENSATEG00000023013	prpf4	70	64.286	Anabas_testudineus
ENSXCOG00000006101	prpf4	93	60.000	ENSAPLG00000006534	PRPF4	67	58.333	Anas_platyrhynchos
ENSXCOG00000006101	prpf4	93	59.012	ENSACAG00000015110	PRPF4	69	57.500	Anolis_carolinensis
ENSXCOG00000006101	prpf4	93	59.360	ENSANAG00000022464	PRPF4	67	57.735	Aotus_nancymaae
ENSXCOG00000006101	prpf4	93	68.949	ENSACLG00000019031	prpf4	70	65.934	Astatotilapia_calliptera
ENSXCOG00000006101	prpf4	93	61.456	ENSAMXG00000006756	prpf4	78	61.456	Astyanax_mexicanus
ENSXCOG00000006101	prpf4	93	59.360	ENSBTAG00000004571	PRPF4	69	58.056	Bos_taurus
ENSXCOG00000006101	prpf4	81	37.360	WBGene00007972	prp-4	63	36.859	Caenorhabditis_elegans
ENSXCOG00000006101	prpf4	93	59.360	ENSCJAG00000017856	PRPF4	69	58.056	Callithrix_jacchus
ENSXCOG00000006101	prpf4	93	59.360	ENSCAFG00000003224	PRPF4	67	58.056	Canis_familiaris
ENSXCOG00000006101	prpf4	93	59.653	ENSCAFG00020022637	PRPF4	69	58.056	Canis_lupus_dingo
ENSXCOG00000006101	prpf4	93	59.360	ENSCHIG00000024648	-	69	58.333	Capra_hircus
ENSXCOG00000006101	prpf4	93	59.360	ENSTSYG00000010366	PRPF4	69	58.056	Carlito_syrichta
ENSXCOG00000006101	prpf4	87	52.507	ENSCAPG00000008935	PRPF4	78	53.254	Cavia_aperea
ENSXCOG00000006101	prpf4	93	55.693	ENSCPOG00000014729	-	70	55.833	Cavia_porcellus
ENSXCOG00000006101	prpf4	93	59.113	ENSCPOG00000010747	-	69	58.056	Cavia_porcellus
ENSXCOG00000006101	prpf4	93	59.113	ENSCCAG00000028990	PRPF4	69	57.778	Cebus_capucinus
ENSXCOG00000006101	prpf4	93	59.653	ENSCATG00000021552	PRPF4	69	58.056	Cercocebus_atys
ENSXCOG00000006101	prpf4	93	59.360	ENSCLAG00000013448	PRPF4	69	58.611	Chinchilla_lanigera
ENSXCOG00000006101	prpf4	93	56.650	ENSCHOG00000007233	PRPF4	80	55.249	Choloepus_hoffmanni
ENSXCOG00000006101	prpf4	93	60.345	ENSCPBG00000019136	PRPF4	52	59.249	Chrysemys_picta_bellii
ENSXCOG00000006101	prpf4	93	49.257	ENSCING00000001299	-	71	47.911	Ciona_intestinalis
ENSXCOG00000006101	prpf4	93	50.000	ENSCSAVG00000009178	-	75	49.435	Ciona_savignyi
ENSXCOG00000006101	prpf4	93	59.360	ENSCANG00000003246	PRPF4	69	58.056	Colobus_angolensis_palliatus
ENSXCOG00000006101	prpf4	93	62.597	ENSCGRG00001016992	Prpf4	77	63.281	Cricetulus_griseus_chok1gshd
ENSXCOG00000006101	prpf4	93	62.597	ENSCGRG00000017560	Prpf4	77	63.281	Cricetulus_griseus_crigri
ENSXCOG00000006101	prpf4	93	64.548	ENSCSEG00000020451	prpf4	71	60.714	Cynoglossus_semilaevis
ENSXCOG00000006101	prpf4	93	62.129	ENSDARG00000067639	prpf4	71	58.496	Danio_rerio
ENSXCOG00000006101	prpf4	93	59.113	ENSDNOG00000013203	PRPF4	69	58.056	Dasypus_novemcinctus
ENSXCOG00000006101	prpf4	93	59.606	ENSDORG00000026275	Prpf4	69	58.333	Dipodomys_ordii
ENSXCOG00000006101	prpf4	92	44.802	FBgn0036733	U4-U6-60K	73	45.879	Drosophila_melanogaster
ENSXCOG00000006101	prpf4	93	59.606	ENSETEG00000020389	PRPF4	69	58.564	Echinops_telfairi
ENSXCOG00000006101	prpf4	92	52.394	ENSEBUG00000015229	prpf4	64	53.239	Eptatretus_burgeri
ENSXCOG00000006101	prpf4	93	59.360	ENSEASG00005022678	PRPF4	69	58.056	Equus_asinus_asinus
ENSXCOG00000006101	prpf4	93	59.360	ENSECAG00000007072	PRPF4	69	58.056	Equus_caballus
ENSXCOG00000006101	prpf4	61	63.559	ENSEEUG00000007480	PRPF4	52	63.559	Erinaceus_europaeus
ENSXCOG00000006101	prpf4	93	61.139	ENSELUG00000007510	prpf4	71	58.217	Esox_lucius
ENSXCOG00000006101	prpf4	93	59.360	ENSFCAG00000005514	PRPF4	69	58.056	Felis_catus
ENSXCOG00000006101	prpf4	87	58.772	ENSFALG00000005423	PRPF4	66	58.772	Ficedula_albicollis
ENSXCOG00000006101	prpf4	93	59.113	ENSFDAG00000005839	PRPF4	69	58.333	Fukomys_damarensis
ENSXCOG00000006101	prpf4	93	69.417	ENSFHEG00000001300	prpf4	70	67.308	Fundulus_heteroclitus
ENSXCOG00000006101	prpf4	93	59.753	ENSGALG00000008857	PRPF4	67	57.735	Gallus_gallus
ENSXCOG00000006101	prpf4	93	61.463	ENSGACG00000015476	prpf4	71	58.564	Gasterosteus_aculeatus
ENSXCOG00000006101	prpf4	93	60.345	ENSGAGG00000025029	PRPF4	67	58.564	Gopherus_agassizii
ENSXCOG00000006101	prpf4	93	59.653	ENSGGOG00000006943	PRPF4	69	58.056	Gorilla_gorilla
ENSXCOG00000006101	prpf4	93	69.193	ENSHBUG00000000562	prpf4	74	66.209	Haplochromis_burtoni
ENSXCOG00000006101	prpf4	93	61.795	ENSHGLG00000015191	PRPF4	77	62.468	Heterocephalus_glaber_female
ENSXCOG00000006101	prpf4	93	57.143	ENSHGLG00000003838	-	80	57.143	Heterocephalus_glaber_female
ENSXCOG00000006101	prpf4	93	55.291	ENSHGLG00000016628	-	78	55.409	Heterocephalus_glaber_female
ENSXCOG00000006101	prpf4	93	57.143	ENSHGLG00100005571	-	80	57.143	Heterocephalus_glaber_male
ENSXCOG00000006101	prpf4	93	60.149	ENSIPUG00000017956	PRPF4	71	56.825	Ictalurus_punctatus
ENSXCOG00000006101	prpf4	93	62.078	ENSSTOG00000027833	PRPF4	77	62.760	Ictidomys_tridecemlineatus
ENSXCOG00000006101	prpf4	93	62.148	ENSJJAG00000008838	Prpf4	77	62.821	Jaculus_jaculus
ENSXCOG00000006101	prpf4	93	68.204	ENSKMAG00000013236	prpf4	70	65.385	Kryptolebias_marmoratus
ENSXCOG00000006101	prpf4	93	67.574	ENSLBEG00000020611	prpf4	71	64.903	Labrus_bergylta
ENSXCOG00000006101	prpf4	93	52.956	ENSLACG00000016317	PRPF4	69	51.524	Latimeria_chalumnae
ENSXCOG00000006101	prpf4	93	62.376	ENSLOCG00000000581	prpf4	71	59.610	Lepisosteus_oculatus
ENSXCOG00000006101	prpf4	93	59.360	ENSLAFG00000018225	PRPF4	69	58.056	Loxodonta_africana
ENSXCOG00000006101	prpf4	93	59.653	ENSMFAG00000039397	PRPF4	69	57.778	Macaca_fascicularis
ENSXCOG00000006101	prpf4	93	63.588	ENSMMUG00000005844	PRPF4	76	64.286	Macaca_mulatta
ENSXCOG00000006101	prpf4	93	49.257	ENSMNEG00000033737	PRPF4	66	46.389	Macaca_nemestrina
ENSXCOG00000006101	prpf4	93	59.653	ENSMLEG00000040284	PRPF4	69	58.056	Mandrillus_leucophaeus
ENSXCOG00000006101	prpf4	93	66.748	ENSMAMG00000020141	prpf4	70	64.624	Mastacembelus_armatus
ENSXCOG00000006101	prpf4	93	68.949	ENSMZEG00005023205	prpf4	70	65.934	Maylandia_zebra
ENSXCOG00000006101	prpf4	93	59.214	ENSMGAG00000001796	PRPF4	67	57.459	Meleagris_gallopavo
ENSXCOG00000006101	prpf4	93	59.653	ENSMAUG00000018022	Prpf4	69	58.056	Mesocricetus_auratus
ENSXCOG00000006101	prpf4	93	59.113	ENSMICG00000015022	PRPF4	69	58.056	Microcebus_murinus
ENSXCOG00000006101	prpf4	93	59.653	ENSMOCG00000018273	Prpf4	69	58.056	Microtus_ochrogaster
ENSXCOG00000006101	prpf4	93	66.748	ENSMMOG00000021177	prpf4	71	63.736	Mola_mola
ENSXCOG00000006101	prpf4	93	58.374	ENSMODG00000025096	-	67	56.944	Monodelphis_domestica
ENSXCOG00000006101	prpf4	93	58.128	ENSMODG00000004444	-	69	57.222	Monodelphis_domestica
ENSXCOG00000006101	prpf4	93	67.726	ENSMALG00000013624	prpf4	70	64.835	Monopterus_albus
ENSXCOG00000006101	prpf4	93	59.653	MGP_CAROLIEiJ_G0026078	Prpf4	69	58.056	Mus_caroli
ENSXCOG00000006101	prpf4	93	59.653	ENSMUSG00000066148	Prpf4	69	58.056	Mus_musculus
ENSXCOG00000006101	prpf4	93	59.653	MGP_PahariEiJ_G0028413	Prpf4	69	58.056	Mus_pahari
ENSXCOG00000006101	prpf4	93	59.653	MGP_SPRETEiJ_G0027042	Prpf4	69	58.056	Mus_spretus
ENSXCOG00000006101	prpf4	93	59.360	ENSMPUG00000007883	PRPF4	69	58.056	Mustela_putorius_furo
ENSXCOG00000006101	prpf4	93	58.867	ENSMLUG00000015309	-	67	57.778	Myotis_lucifugus
ENSXCOG00000006101	prpf4	93	58.128	ENSMLUG00000008626	-	67	56.906	Myotis_lucifugus
ENSXCOG00000006101	prpf4	93	58.221	ENSNGAG00000000468	Prpf4	75	58.602	Nannospalax_galili
ENSXCOG00000006101	prpf4	93	68.949	ENSNBRG00000007972	prpf4	70	65.934	Neolamprologus_brichardi
ENSXCOG00000006101	prpf4	93	59.360	ENSNLEG00000016647	PRPF4	69	58.056	Nomascus_leucogenys
ENSXCOG00000006101	prpf4	93	58.621	ENSMEUG00000013256	PRPF4	70	57.222	Notamacropus_eugenii
ENSXCOG00000006101	prpf4	93	59.606	ENSOPRG00000005302	PRPF4	69	58.333	Ochotona_princeps
ENSXCOG00000006101	prpf4	93	59.113	ENSODEG00000018147	PRPF4	69	58.333	Octodon_degus
ENSXCOG00000006101	prpf4	93	68.949	ENSONIG00000012671	prpf4	70	66.209	Oreochromis_niloticus
ENSXCOG00000006101	prpf4	93	59.606	ENSOCUG00000005046	PRPF4	69	58.333	Oryctolagus_cuniculus
ENSXCOG00000006101	prpf4	93	66.748	ENSORLG00000019641	prpf4	71	64.011	Oryzias_latipes
ENSXCOG00000006101	prpf4	93	66.748	ENSORLG00020019438	prpf4	71	64.011	Oryzias_latipes_hni
ENSXCOG00000006101	prpf4	93	66.917	ENSOMEG00000020941	prpf4	75	64.286	Oryzias_melastigma
ENSXCOG00000006101	prpf4	93	53.941	ENSOGAG00000007802	PRPF4	76	50.976	Otolemur_garnettii
ENSXCOG00000006101	prpf4	93	59.360	ENSOARG00000006319	PRPF4	67	58.011	Ovis_aries
ENSXCOG00000006101	prpf4	93	59.653	ENSPPAG00000041797	PRPF4	69	58.056	Pan_paniscus
ENSXCOG00000006101	prpf4	93	59.360	ENSPPRG00000014360	PRPF4	69	58.056	Panthera_pardus
ENSXCOG00000006101	prpf4	93	59.360	ENSPTIG00000009574	PRPF4	69	58.056	Panthera_tigris_altaica
ENSXCOG00000006101	prpf4	93	59.653	ENSPTRG00000021274	PRPF4	69	58.056	Pan_troglodytes
ENSXCOG00000006101	prpf4	93	59.360	ENSPANG00000025776	PRPF4	66	57.735	Papio_anubis
ENSXCOG00000006101	prpf4	93	63.366	ENSPKIG00000017259	prpf4	71	60.167	Paramormyrops_kingsleyae
ENSXCOG00000006101	prpf4	93	59.852	ENSPSIG00000010713	PRPF4	63	58.889	Pelodiscus_sinensis
ENSXCOG00000006101	prpf4	93	52.041	ENSPMGG00000000997	prpf4	75	52.041	Periophthalmus_magnuspinnatus
ENSXCOG00000006101	prpf4	93	59.653	ENSPEMG00000024115	Prpf4	69	58.056	Peromyscus_maniculatus_bairdii
ENSXCOG00000006101	prpf4	93	58.621	ENSPCIG00000003821	PRPF4	70	57.222	Phascolarctos_cinereus
ENSXCOG00000006101	prpf4	93	66.015	ENSPFOG00000013524	prpf4	68	83.408	Poecilia_formosa
ENSXCOG00000006101	prpf4	57	84.545	ENSPLAG00000011620	prpf4	66	84.545	Poecilia_latipinna
ENSXCOG00000006101	prpf4	60	83.475	ENSPMEG00000006813	prpf4	69	83.475	Poecilia_mexicana
ENSXCOG00000006101	prpf4	93	59.158	ENSPCAG00000002561	PRPF4	70	57.500	Procavia_capensis
ENSXCOG00000006101	prpf4	93	59.158	ENSPCOG00000011975	PRPF4	69	57.778	Propithecus_coquereli
ENSXCOG00000006101	prpf4	93	55.693	ENSPVAG00000004708	PRPF4	69	53.611	Pteropus_vampyrus
ENSXCOG00000006101	prpf4	93	69.193	ENSPNYG00000008013	prpf4	70	66.209	Pundamilia_nyererei
ENSXCOG00000006101	prpf4	93	60.396	ENSPNAG00000000697	prpf4	71	56.546	Pygocentrus_nattereri
ENSXCOG00000006101	prpf4	93	59.653	ENSRNOG00000014777	Prpf4	69	58.333	Rattus_norvegicus
ENSXCOG00000006101	prpf4	93	59.360	ENSRBIG00000040221	PRPF4	69	58.056	Rhinopithecus_bieti
ENSXCOG00000006101	prpf4	93	59.360	ENSRROG00000040240	PRPF4	69	58.056	Rhinopithecus_roxellana
ENSXCOG00000006101	prpf4	93	58.621	ENSSHAG00000017658	PRPF4	69	57.222	Sarcophilus_harrisii
ENSXCOG00000006101	prpf4	93	61.881	ENSSFOG00015008963	prpf4	71	59.331	Scleropages_formosus
ENSXCOG00000006101	prpf4	93	66.990	ENSSMAG00000008889	prpf4	70	63.736	Scophthalmus_maximus
ENSXCOG00000006101	prpf4	86	65.183	ENSSDUG00000022083	prpf4	70	64.560	Seriola_dumerili
ENSXCOG00000006101	prpf4	86	64.660	ENSSLDG00000008115	prpf4	70	64.011	Seriola_lalandi_dorsalis
ENSXCOG00000006101	prpf4	93	59.406	ENSSPUG00000015582	PRPF4	69	58.056	Sphenodon_punctatus
ENSXCOG00000006101	prpf4	83	73.626	ENSSPAG00000011286	prpf4	67	70.497	Stegastes_partitus
ENSXCOG00000006101	prpf4	93	59.360	ENSSSCG00000024648	PRPF4	69	58.056	Sus_scrofa
ENSXCOG00000006101	prpf4	93	60.197	ENSTGUG00000002623	PRPF4	73	58.287	Taeniopygia_guttata
ENSXCOG00000006101	prpf4	93	65.594	ENSTRUG00000008853	prpf4	68	66.049	Takifugu_rubripes
ENSXCOG00000006101	prpf4	93	66.337	ENSTNIG00000013250	prpf4	71	63.231	Tetraodon_nigroviridis
ENSXCOG00000006101	prpf4	93	50.248	ENSTBEG00000000821	PRPF4	77	47.778	Tupaia_belangeri
ENSXCOG00000006101	prpf4	81	83.607	ENSTTRG00000003246	PRPF4	69	83.607	Tursiops_truncatus
ENSXCOG00000006101	prpf4	54	66.184	ENSUAMG00000018288	PRPF4	64	64.000	Ursus_americanus
ENSXCOG00000006101	prpf4	82	64.903	ENSUMAG00000019375	PRPF4	61	63.376	Ursus_maritimus
ENSXCOG00000006101	prpf4	93	59.406	ENSVPAG00000005281	PRPF4	69	58.056	Vicugna_pacos
ENSXCOG00000006101	prpf4	93	58.537	ENSVVUG00000002476	PRPF4	72	57.143	Vulpes_vulpes
ENSXCOG00000006101	prpf4	93	88.889	ENSXMAG00000002750	prpf4	77	89.916	Xiphophorus_maculatus