EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSXCOG00000006113 (Gene tree)
Gene ID: -
Gene Symbol: msi2a
Alias: cb746|fi47b09|msi2|wu:fb02d08|wu:fi32d12|wu:fi47b09
Full Name: musashi RNA-binding protein 2a
Gene Type: protein_coding
Species: Xiphophorus_couchianus
Status: putative
Strand: Plus strand
Length: 438868 bases
Position: chrKQ557203.1:13720497-14159364
Accession: ZDB-GENE-030826-25
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSXCOP00000007987	RRM_1	PF00076.22	5.8e-29	1	2
ENSXCOP00000007987	RRM_1	PF00076.22	5.8e-29	2	2
ENSXCOP00000007981	RRM_1	PF00076.22	2e-26	1	2
ENSXCOP00000007981	RRM_1	PF00076.22	2e-26	2	2
ENSXCOP00000007979	RRM_1	PF00076.22	1.8e-18	1	1
ENSXCOP00000007992	RRM_1	PF00076.22	7.8e-18	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSXCOT00000008079	-	1143	-	ENSXCOP00000007981	380 (aa)	-	-
ENSXCOT00000008085	-	1122	-	ENSXCOP00000007987	373 (aa)	-	-
ENSXCOT00000008077	-	1152	-	ENSXCOP00000007979	383 (aa)	-	-
ENSXCOT00000008090	-	1017	-	ENSXCOP00000007992	338 (aa)	-	-

Gene Model

Click here to download ENSXCOG00000006113's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSXCOG00000006113's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSXCOG00000006113	msi2a	51	35.484	ENSXCOG00000009001	-	86	35.484
ENSXCOG00000006113	msi2a	87	67.188	ENSXCOG00000017605	MSI1	86	67.188
ENSXCOG00000006113	msi2a	53	37.209	ENSXCOG00000019224	HNRNPA1P48	91	35.021

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSXCOG00000006113	msi2a	89	87.500	ENSG00000153944	MSI2	93	92.857	Homo_sapiens
ENSXCOG00000006113	msi2a	100	93.612	ENSAPOG00000001658	msi2a	99	98.413	Acanthochromis_polyacanthus
ENSXCOG00000006113	msi2a	95	78.356	ENSAMEG00000002697	MSI2	99	78.356	Ailuropoda_melanoleuca
ENSXCOG00000006113	msi2a	98	96.277	ENSACIG00000009475	msi2a	99	96.277	Amphilophus_citrinellus
ENSXCOG00000006113	msi2a	85	98.413	ENSAPEG00000007706	msi2a	96	98.413	Amphiprion_percula
ENSXCOG00000006113	msi2a	100	93.612	ENSATEG00000010498	msi2a	99	98.413	Anabas_testudineus
ENSXCOG00000006113	msi2a	81	95.327	ENSATEG00000003301	-	95	85.572	Anabas_testudineus
ENSXCOG00000006113	msi2a	95	80.398	ENSACAG00000005452	MSI2	88	80.398	Anolis_carolinensis
ENSXCOG00000006113	msi2a	89	87.500	ENSANAG00000037827	MSI2	96	87.500	Aotus_nancymaae
ENSXCOG00000006113	msi2a	100	93.612	ENSACLG00000007752	msi2a	99	98.438	Astatotilapia_calliptera
ENSXCOG00000006113	msi2a	100	90.722	ENSAMXG00000010474	msi2b	100	90.722	Astyanax_mexicanus
ENSXCOG00000006113	msi2a	100	91.517	ENSAMXG00000032796	msi2a	100	91.774	Astyanax_mexicanus
ENSXCOG00000006113	msi2a	98	72.861	ENSBTAG00000004406	MSI2	93	86.087	Bos_taurus
ENSXCOG00000006113	msi2a	62	53.712	WBGene00003423	msi-1	73	59.657	Caenorhabditis_elegans
ENSXCOG00000006113	msi2a	89	87.500	ENSCJAG00000013998	MSI2	96	87.500	Callithrix_jacchus
ENSXCOG00000006113	msi2a	96	76.857	ENSCAFG00020025620	MSI2	71	93.370	Canis_lupus_dingo
ENSXCOG00000006113	msi2a	85	89.062	ENSCHIG00000016580	MSI2	96	89.062	Capra_hircus
ENSXCOG00000006113	msi2a	83	87.500	ENSCPOG00000034042	MSI2	89	87.500	Cavia_porcellus
ENSXCOG00000006113	msi2a	89	87.500	ENSCCAG00000033927	MSI2	96	87.500	Cebus_capucinus
ENSXCOG00000006113	msi2a	86	87.500	ENSCATG00000040879	MSI2	96	87.500	Cercocebus_atys
ENSXCOG00000006113	msi2a	100	78.238	ENSCLAG00000014325	MSI2	100	78.238	Chinchilla_lanigera
ENSXCOG00000006113	msi2a	89	87.500	ENSCSAG00000005633	MSI2	96	87.500	Chlorocebus_sabaeus
ENSXCOG00000006113	msi2a	62	86.000	ENSCHOG00000008660	MSI2	83	86.000	Choloepus_hoffmanni
ENSXCOG00000006113	msi2a	95	83.140	ENSCPBG00000009942	MSI2	96	83.140	Chrysemys_picta_bellii
ENSXCOG00000006113	msi2a	81	46.460	ENSCING00000018579	-	60	65.693	Ciona_intestinalis
ENSXCOG00000006113	msi2a	59	60.924	ENSCSAVG00000010397	-	67	66.507	Ciona_savignyi
ENSXCOG00000006113	msi2a	85	87.500	ENSCANG00000036414	MSI2	90	93.213	Colobus_angolensis_palliatus
ENSXCOG00000006113	msi2a	89	86.154	ENSCGRG00001013330	Msi2	96	86.154	Cricetulus_griseus_chok1gshd
ENSXCOG00000006113	msi2a	95	78.142	ENSCGRG00000003141	Msi2	100	78.142	Cricetulus_griseus_crigri
ENSXCOG00000006113	msi2a	88	77.778	ENSCSEG00000003266	-	96	81.557	Cynoglossus_semilaevis
ENSXCOG00000006113	msi2a	63	82.609	ENSCSEG00000013557	msi2a	83	92.063	Cynoglossus_semilaevis
ENSXCOG00000006113	msi2a	100	97.680	ENSCVAG00000017075	msi2a	100	100.000	Cyprinodon_variegatus
ENSXCOG00000006113	msi2a	100	87.887	ENSDARG00000033901	msi2a	100	87.887	Danio_rerio
ENSXCOG00000006113	msi2a	100	87.500	ENSDARG00000032614	msi2b	100	97.030	Danio_rerio
ENSXCOG00000006113	msi2a	83	87.500	ENSDNOG00000014501	MSI2	95	87.500	Dasypus_novemcinctus
ENSXCOG00000006113	msi2a	83	53.906	ENSDORG00000005394	Msi2	79	87.500	Dipodomys_ordii
ENSXCOG00000006113	msi2a	96	51.832	FBgn0260943	Rbp6	90	64.189	Drosophila_melanogaster
ENSXCOG00000006113	msi2a	58	72.368	ENSETEG00000012450	-	64	72.368	Echinops_telfairi
ENSXCOG00000006113	msi2a	90	59.644	ENSEBUG00000006732	msi2a	82	63.838	Eptatretus_burgeri
ENSXCOG00000006113	msi2a	90	86.207	ENSEASG00005002965	MSI2	96	93.370	Equus_asinus_asinus
ENSXCOG00000006113	msi2a	100	75.584	ENSECAG00000011435	MSI2	100	76.650	Equus_caballus
ENSXCOG00000006113	msi2a	72	78.218	ENSEEUG00000007810	MSI2	93	81.395	Erinaceus_europaeus
ENSXCOG00000006113	msi2a	100	89.620	ENSELUG00000001361	msi2b	100	89.620	Esox_lucius
ENSXCOG00000006113	msi2a	96	92.533	ENSELUG00000011747	msi2a	97	92.935	Esox_lucius
ENSXCOG00000006113	msi2a	89	87.500	ENSFCAG00000041686	MSI2	96	87.500	Felis_catus
ENSXCOG00000006113	msi2a	95	78.356	ENSFDAG00000016118	MSI2	100	78.356	Fukomys_damarensis
ENSXCOG00000006113	msi2a	100	94.103	ENSFHEG00000000084	msi2a	96	100.000	Fundulus_heteroclitus
ENSXCOG00000006113	msi2a	100	77.461	ENSGALG00000005567	MSI2	100	77.461	Gallus_gallus
ENSXCOG00000006113	msi2a	85	100.000	ENSGAFG00000006974	msi2a	95	100.000	Gambusia_affinis
ENSXCOG00000006113	msi2a	100	81.127	ENSGAGG00000016542	MSI2	100	80.882	Gopherus_agassizii
ENSXCOG00000006113	msi2a	88	87.500	ENSGGOG00000013182	MSI2	90	93.213	Gorilla_gorilla
ENSXCOG00000006113	msi2a	100	93.612	ENSHBUG00000020800	msi2a	99	98.438	Haplochromis_burtoni
ENSXCOG00000006113	msi2a	100	70.207	ENSHGLG00000012444	MSI2	100	70.207	Heterocephalus_glaber_female
ENSXCOG00000006113	msi2a	80	69.355	ENSHGLG00100003744	MSI2	99	73.077	Heterocephalus_glaber_male
ENSXCOG00000006113	msi2a	96	71.574	ENSHCOG00000017241	-	98	70.738	Hippocampus_comes
ENSXCOG00000006113	msi2a	100	92.629	ENSHCOG00000000266	msi2a	100	92.629	Hippocampus_comes
ENSXCOG00000006113	msi2a	100	85.222	ENSIPUG00000021097	msi2a	99	92.975	Ictalurus_punctatus
ENSXCOG00000006113	msi2a	100	90.206	ENSIPUG00000003732	msi2b	100	90.206	Ictalurus_punctatus
ENSXCOG00000006113	msi2a	83	87.500	ENSSTOG00000007884	MSI2	89	87.500	Ictidomys_tridecemlineatus
ENSXCOG00000006113	msi2a	80	61.694	ENSJJAG00000006292	-	99	75.000	Jaculus_jaculus
ENSXCOG00000006113	msi2a	100	97.423	ENSKMAG00000009494	msi2a	100	97.423	Kryptolebias_marmoratus
ENSXCOG00000006113	msi2a	96	76.316	ENSLBEG00000026223	-	100	76.676	Labrus_bergylta
ENSXCOG00000006113	msi2a	100	93.612	ENSLBEG00000007061	msi2a	96	98.413	Labrus_bergylta
ENSXCOG00000006113	msi2a	54	67.327	ENSLACG00000016798	MSI2	98	89.011	Latimeria_chalumnae
ENSXCOG00000006113	msi2a	100	92.010	ENSLOCG00000004675	msi2b	100	92.010	Lepisosteus_oculatus
ENSXCOG00000006113	msi2a	85	87.500	ENSMFAG00000003775	MSI2	90	93.213	Macaca_fascicularis
ENSXCOG00000006113	msi2a	85	87.500	ENSMMUG00000002069	MSI2	90	93.213	Macaca_mulatta
ENSXCOG00000006113	msi2a	89	87.500	ENSMNEG00000045275	MSI2	96	87.500	Macaca_nemestrina
ENSXCOG00000006113	msi2a	85	87.500	ENSMLEG00000033888	MSI2	90	93.213	Mandrillus_leucophaeus
ENSXCOG00000006113	msi2a	100	93.382	ENSMAMG00000010503	msi2a	99	98.413	Mastacembelus_armatus
ENSXCOG00000006113	msi2a	100	81.643	ENSMAMG00000002488	-	99	92.053	Mastacembelus_armatus
ENSXCOG00000006113	msi2a	100	93.612	ENSMZEG00005007676	msi2a	96	98.438	Maylandia_zebra
ENSXCOG00000006113	msi2a	100	77.778	ENSMAUG00000003862	Msi2	100	77.778	Mesocricetus_auratus
ENSXCOG00000006113	msi2a	96	86.000	ENSMICG00000013598	-	96	87.500	Microcebus_murinus
ENSXCOG00000006113	msi2a	78	85.246	ENSMICG00000032913	-	93	85.246	Microcebus_murinus
ENSXCOG00000006113	msi2a	100	77.979	ENSMOCG00000005820	Msi2	100	77.979	Microtus_ochrogaster
ENSXCOG00000006113	msi2a	96	84.146	ENSMMOG00000008348	msi2a	90	100.000	Mola_mola
ENSXCOG00000006113	msi2a	80	69.355	ENSMODG00000014790	MSI2	99	73.077	Monodelphis_domestica
ENSXCOG00000006113	msi2a	100	98.013	ENSMALG00000000071	msi2a	100	98.013	Monopterus_albus
ENSXCOG00000006113	msi2a	100	77.979	MGP_CAROLIEiJ_G0016948	Msi2	100	94.690	Mus_caroli
ENSXCOG00000006113	msi2a	100	77.979	ENSMUSG00000069769	Msi2	100	94.690	Mus_musculus
ENSXCOG00000006113	msi2a	100	77.979	MGP_PahariEiJ_G0018079	Msi2	100	94.690	Mus_pahari
ENSXCOG00000006113	msi2a	100	77.979	MGP_SPRETEiJ_G0017795	Msi2	100	94.690	Mus_spretus
ENSXCOG00000006113	msi2a	98	73.156	ENSMPUG00000015377	MSI2	93	87.500	Mustela_putorius_furo
ENSXCOG00000006113	msi2a	98	72.566	ENSMLUG00000007865	MSI2	93	87.500	Myotis_lucifugus
ENSXCOG00000006113	msi2a	100	77.979	ENSNGAG00000017807	Msi2	100	77.979	Nannospalax_galili
ENSXCOG00000006113	msi2a	100	97.423	ENSNBRG00000014596	msi2a	100	97.423	Neolamprologus_brichardi
ENSXCOG00000006113	msi2a	93	76.923	ENSNLEG00000008059	MSI2	95	93.269	Nomascus_leucogenys
ENSXCOG00000006113	msi2a	58	83.553	ENSOPRG00000000872	-	64	83.553	Ochotona_princeps
ENSXCOG00000006113	msi2a	100	78.238	ENSODEG00000011974	MSI2	100	78.238	Octodon_degus
ENSXCOG00000006113	msi2a	95	74.453	ENSOANG00000005667	MSI2	97	75.669	Ornithorhynchus_anatinus
ENSXCOG00000006113	msi2a	98	73.156	ENSOCUG00000010440	MSI2	93	87.500	Oryctolagus_cuniculus
ENSXCOG00000006113	msi2a	100	97.680	ENSORLG00000009671	msi2a	100	97.680	Oryzias_latipes
ENSXCOG00000006113	msi2a	100	93.857	ENSORLG00020021556	msi2a	99	98.438	Oryzias_latipes_hni
ENSXCOG00000006113	msi2a	100	97.680	ENSORLG00015004592	msi2a	100	97.680	Oryzias_latipes_hsok
ENSXCOG00000006113	msi2a	100	97.680	ENSOMEG00000000146	msi2a	100	97.680	Oryzias_melastigma
ENSXCOG00000006113	msi2a	83	87.500	ENSOGAG00000005621	MSI2	95	87.500	Otolemur_garnettii
ENSXCOG00000006113	msi2a	94	78.297	ENSPPAG00000037697	MSI2	90	93.213	Pan_paniscus
ENSXCOG00000006113	msi2a	83	87.500	ENSPPRG00000001848	MSI2	90	93.213	Panthera_pardus
ENSXCOG00000006113	msi2a	93	76.923	ENSPTIG00000021678	MSI2	83	93.269	Panthera_tigris_altaica
ENSXCOG00000006113	msi2a	69	69.658	ENSPTIG00000021873	-	89	75.966	Panthera_tigris_altaica
ENSXCOG00000006113	msi2a	88	87.500	ENSPTRG00000009437	MSI2	90	93.213	Pan_troglodytes
ENSXCOG00000006113	msi2a	89	87.500	ENSPANG00000022319	MSI2	96	87.500	Papio_anubis
ENSXCOG00000006113	msi2a	100	79.070	ENSPKIG00000007038	-	95	90.909	Paramormyrops_kingsleyae
ENSXCOG00000006113	msi2a	100	84.483	ENSPSIG00000008618	MSI2	100	84.483	Pelodiscus_sinensis
ENSXCOG00000006113	msi2a	85	96.825	ENSPMGG00000005888	msi2a	96	96.825	Periophthalmus_magnuspinnatus
ENSXCOG00000006113	msi2a	100	76.104	ENSPCIG00000006063	MSI2	100	77.157	Phascolarctos_cinereus
ENSXCOG00000006113	msi2a	53	61.386	ENSPFOG00000019337	MSI2	92	96.190	Poecilia_formosa
ENSXCOG00000006113	msi2a	100	93.857	ENSPREG00000000881	msi2a	100	93.857	Poecilia_reticulata
ENSXCOG00000006113	msi2a	83	87.500	ENSPPYG00000008244	-	94	87.500	Pongo_abelii
ENSXCOG00000006113	msi2a	63	87.500	ENSPCAG00000010552	MSI2	95	87.500	Procavia_capensis
ENSXCOG00000006113	msi2a	54	77.027	ENSPCOG00000019195	-	93	94.828	Propithecus_coquereli
ENSXCOG00000006113	msi2a	65	95.580	ENSPVAG00000017053	MSI2	84	86.264	Pteropus_vampyrus
ENSXCOG00000006113	msi2a	100	93.612	ENSPNYG00000018393	msi2a	99	98.438	Pundamilia_nyererei
ENSXCOG00000006113	msi2a	100	90.488	ENSPNAG00000000844	msi2b	100	90.488	Pygocentrus_nattereri
ENSXCOG00000006113	msi2a	100	92.031	ENSPNAG00000014957	msi2a	99	93.561	Pygocentrus_nattereri
ENSXCOG00000006113	msi2a	83	87.500	ENSRNOG00000025338	Msi2	95	87.500	Rattus_norvegicus
ENSXCOG00000006113	msi2a	54	75.000	ENSRROG00000034421	-	92	94.737	Rhinopithecus_roxellana
ENSXCOG00000006113	msi2a	94	78.297	ENSSBOG00000026425	MSI2	90	93.213	Saimiri_boliviensis_boliviensis
ENSXCOG00000006113	msi2a	94	78.297	ENSSHAG00000008672	MSI2	100	78.297	Sarcophilus_harrisii
ENSXCOG00000006113	msi2a	95	72.603	ENSSFOG00015021687	-	97	91.403	Scleropages_formosus
ENSXCOG00000006113	msi2a	100	71.960	ENSSFOG00015012168	msi2b	100	71.712	Scleropages_formosus
ENSXCOG00000006113	msi2a	100	93.857	ENSSMAG00000018484	msi2a	99	98.438	Scophthalmus_maximus
ENSXCOG00000006113	msi2a	100	70.757	ENSSDUG00000021968	-	99	92.053	Seriola_dumerili
ENSXCOG00000006113	msi2a	100	93.612	ENSSDUG00000014507	msi2a	99	98.413	Seriola_dumerili
ENSXCOG00000006113	msi2a	100	93.612	ENSSLDG00000017172	msi2a	96	98.413	Seriola_lalandi_dorsalis
ENSXCOG00000006113	msi2a	100	93.612	ENSSPAG00000017793	msi2a	98	98.413	Stegastes_partitus
ENSXCOG00000006113	msi2a	89	87.500	ENSSSCG00000038505	MSI2	95	91.736	Sus_scrofa
ENSXCOG00000006113	msi2a	80	69.355	ENSTGUG00000008452	MSI2	99	73.077	Taeniopygia_guttata
ENSXCOG00000006113	msi2a	97	92.386	ENSTRUG00000021248	msi2a	96	95.312	Takifugu_rubripes
ENSXCOG00000006113	msi2a	62	76.667	ENSTBEG00000001241	MSI2	73	76.667	Tupaia_belangeri
ENSXCOG00000006113	msi2a	74	94.079	ENSTTRG00000002189	MSI2	91	94.079	Tursiops_truncatus
ENSXCOG00000006113	msi2a	98	73.156	ENSUAMG00000000700	MSI2	96	93.213	Ursus_americanus
ENSXCOG00000006113	msi2a	77	86.000	ENSUMAG00000000505	MSI2	94	92.708	Ursus_maritimus
ENSXCOG00000006113	msi2a	100	78.238	ENSVVUG00000011783	MSI2	96	91.905	Vulpes_vulpes
ENSXCOG00000006113	msi2a	100	94.103	ENSXMAG00000000608	msi2a	100	100.000	Xiphophorus_maculatus