EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSXCOG00000006300 (Gene tree)
Gene ID: -
Gene Symbol: -
Alias: RAB5CL|RABL
Full Name: -
Gene Type: protein_coding
Species: Xiphophorus_couchianus
Status: putative
Strand: Plus strand
Length: 6991 bases
Position: chrKQ557202.1:18033688-18040678
Accession: -
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSXCOP00000008202	MMR_HSR1	PF01926.23	0.00015	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSXCOT00000008300	-	672	-	ENSXCOP00000008202	223 (aa)	-	UPI000293D9FF

Gene Model

Click here to download ENSXCOG00000006300's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSXCOG00000006300's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSXCOG00000006300	-	72	44.099	ENSXCOG00000019533	rab13	86	44.099
ENSXCOG00000006300	-	78	35.754	ENSXCOG00000020575	RAB9A	81	35.714
ENSXCOG00000006300	-	75	38.372	ENSXCOG00000019310	rab12	70	38.372
ENSXCOG00000006300	-	73	36.145	ENSXCOG00000008410	si:dkey-34d22.5	75	36.145
ENSXCOG00000006300	-	58	38.686	ENSXCOG00000003192	-	65	38.686
ENSXCOG00000006300	-	67	38.065	ENSXCOG00000019054	rab9a	70	38.065
ENSXCOG00000006300	-	74	39.766	ENSXCOG00000018683	zgc:101559	73	39.766
ENSXCOG00000006300	-	83	50.000	ENSXCOG00000016452	rab22a	95	50.000
ENSXCOG00000006300	-	74	36.145	ENSXCOG00000006807	rab39bb	77	36.585
ENSXCOG00000006300	-	73	46.012	ENSXCOG00000010770	-	65	46.012
ENSXCOG00000006300	-	74	38.462	ENSXCOG00000000469	rab33ba	75	38.462
ENSXCOG00000006300	-	99	83.258	ENSXCOG00000020121	rab5aa	95	87.923
ENSXCOG00000006300	-	90	42.647	ENSXCOG00000020125	rab25a	94	47.482
ENSXCOG00000006300	-	89	42.157	ENSXCOG00000008042	-	75	46.626
ENSXCOG00000006300	-	74	35.673	ENSXCOG00000012032	-	76	36.095
ENSXCOG00000006300	-	72	38.554	ENSXCOG00000013344	rab33a	59	38.554
ENSXCOG00000006300	-	72	32.500	ENSXCOG00000011864	rab23	68	35.000
ENSXCOG00000006300	-	99	89.640	ENSXCOG00000016788	rab5c	95	91.866
ENSXCOG00000006300	-	93	39.614	ENSXCOG00000002232	rab6bb	93	39.899
ENSXCOG00000006300	-	73	36.585	ENSXCOG00000003428	rab42a	75	36.585
ENSXCOG00000006300	-	65	31.724	ENSXCOG00000019281	rheb	79	32.414
ENSXCOG00000006300	-	76	45.402	ENSXCOG00000004227	rab25b	83	45.402
ENSXCOG00000006300	-	89	41.089	ENSXCOG00000004226	rab11al	73	48.408
ENSXCOG00000006300	-	77	43.605	ENSXCOG00000015802	RAB41	82	43.605
ENSXCOG00000006300	-	73	46.626	ENSXCOG00000001357	rab11a	62	46.626
ENSXCOG00000006300	-	70	32.298	ENSXCOG00000009541	rab34a	62	32.298
ENSXCOG00000006300	-	89	43.939	ENSXCOG00000013842	rab1ab	86	45.402
ENSXCOG00000006300	-	74	41.765	ENSXCOG00000019921	rab7a	82	41.765
ENSXCOG00000006300	-	53	30.081	ENSXCOG00000013402	arl8ba	70	30.081
ENSXCOG00000006300	-	55	47.541	ENSXCOG00000009194	-	90	47.541
ENSXCOG00000006300	-	89	42.157	ENSXCOG00000009190	-	75	46.626
ENSXCOG00000006300	-	89	40.291	ENSXCOG00000010695	zgc:171927	84	43.860
ENSXCOG00000006300	-	73	31.902	ENSXCOG00000020508	kras	86	31.148
ENSXCOG00000006300	-	89	33.495	ENSXCOG00000009094	rab9b	91	34.031
ENSXCOG00000006300	-	54	30.645	ENSXCOG00000004543	arl8bb	63	30.645
ENSXCOG00000006300	-	91	39.604	ENSXCOG00000006259	rab6a	80	44.311
ENSXCOG00000006300	-	74	30.909	ENSXCOG00000020608	hrasb	93	31.818

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSXCOG00000006300	-	99	88.235	ENSG00000108774	RAB5C	100	96.000	Homo_sapiens
ENSXCOG00000006300	-	99	89.189	ENSAPOG00000016864	rab5c	95	92.344	Acanthochromis_polyacanthus
ENSXCOG00000006300	-	99	87.838	ENSAMEG00000006003	RAB5C	96	91.429	Ailuropoda_melanoleuca
ENSXCOG00000006300	-	99	89.189	ENSACIG00000010896	rab5c	95	91.388	Amphilophus_citrinellus
ENSXCOG00000006300	-	99	89.189	ENSAOCG00000016614	rab5c	95	92.344	Amphiprion_ocellaris
ENSXCOG00000006300	-	98	88.128	ENSAPEG00000017868	-	94	91.262	Amphiprion_percula
ENSXCOG00000006300	-	99	88.739	ENSATEG00000001937	rab5c	95	91.866	Anabas_testudineus
ENSXCOG00000006300	-	92	92.233	ENSANAG00000025390	RAB5C	100	92.233	Aotus_nancymaae
ENSXCOG00000006300	-	97	92.130	ENSACLG00000008615	-	95	95.714	Astatotilapia_calliptera
ENSXCOG00000006300	-	99	87.838	ENSACLG00000002706	rab5c	95	89.952	Astatotilapia_calliptera
ENSXCOG00000006300	-	99	90.135	ENSAMXG00000043717	rab5c	95	92.381	Astyanax_mexicanus
ENSXCOG00000006300	-	96	87.324	ENSAMXG00000037267	-	96	90.594	Astyanax_mexicanus
ENSXCOG00000006300	-	99	88.636	ENSBTAG00000006982	RAB5C	96	91.429	Bos_taurus
ENSXCOG00000006300	-	99	73.636	WBGene00004268	rab-5	90	81.053	Caenorhabditis_elegans
ENSXCOG00000006300	-	99	87.838	ENSCAFG00000015629	RAB5C	96	91.429	Canis_familiaris
ENSXCOG00000006300	-	99	87.838	ENSCAFG00020013537	RAB5C	96	91.429	Canis_lupus_dingo
ENSXCOG00000006300	-	99	88.636	ENSCHIG00000012960	RAB5C	96	91.429	Capra_hircus
ENSXCOG00000006300	-	99	89.091	ENSTSYG00000030531	RAB5C	96	91.905	Carlito_syrichta
ENSXCOG00000006300	-	99	88.235	ENSCCAG00000025940	RAB5C	96	91.429	Cebus_capucinus
ENSXCOG00000006300	-	99	88.235	ENSCATG00000040873	RAB5C	96	91.429	Cercocebus_atys
ENSXCOG00000006300	-	99	89.091	ENSCLAG00000016650	RAB5C	96	91.429	Chinchilla_lanigera
ENSXCOG00000006300	-	80	94.972	ENSCHOG00000009886	RAB5C	100	94.972	Choloepus_hoffmanni
ENSXCOG00000006300	-	100	74.439	ENSCING00000003340	-	90	79.293	Ciona_intestinalis
ENSXCOG00000006300	-	99	72.368	ENSCSAVG00000000613	-	99	80.982	Ciona_savignyi
ENSXCOG00000006300	-	99	88.235	ENSCGRG00001014226	Rab5c	96	91.429	Cricetulus_griseus_chok1gshd
ENSXCOG00000006300	-	99	88.235	ENSCGRG00000007534	Rab5c	96	91.429	Cricetulus_griseus_crigri
ENSXCOG00000006300	-	99	89.189	ENSCSEG00000017024	rab5c	95	91.866	Cynoglossus_semilaevis
ENSXCOG00000006300	-	99	90.090	ENSCVAG00000009550	rab5c	95	92.823	Cyprinodon_variegatus
ENSXCOG00000006300	-	99	88.235	ENSDNOG00000038853	RAB5C	96	91.429	Dasypus_novemcinctus
ENSXCOG00000006300	-	99	89.091	ENSDORG00000006819	Rab5c	96	91.905	Dipodomys_ordii
ENSXCOG00000006300	-	96	72.222	FBgn0014010	Rab5	92	75.490	Drosophila_melanogaster
ENSXCOG00000006300	-	88	81.218	ENSEBUG00000014794	rab5c	91	82.292	Eptatretus_burgeri
ENSXCOG00000006300	-	99	87.838	ENSEASG00005009281	RAB5C	96	91.429	Equus_asinus_asinus
ENSXCOG00000006300	-	99	89.091	ENSECAG00000025054	RAB5C	96	91.905	Equus_caballus
ENSXCOG00000006300	-	99	88.636	ENSEEUG00000002790	RAB5C	96	91.429	Erinaceus_europaeus
ENSXCOG00000006300	-	99	89.091	ENSELUG00000018516	rab5c	96	91.388	Esox_lucius
ENSXCOG00000006300	-	99	86.036	ENSELUG00000010439	-	95	88.038	Esox_lucius
ENSXCOG00000006300	-	99	88.636	ENSFCAG00000002148	RAB5C	96	91.429	Felis_catus
ENSXCOG00000006300	-	99	87.727	ENSFDAG00000021541	RAB5C	96	90.000	Fukomys_damarensis
ENSXCOG00000006300	-	100	94.619	ENSFHEG00000015268	-	95	98.086	Fundulus_heteroclitus
ENSXCOG00000006300	-	99	88.739	ENSFHEG00000012117	rab5c	95	91.388	Fundulus_heteroclitus
ENSXCOG00000006300	-	99	88.739	ENSGMOG00000015096	rab5c	95	91.388	Gadus_morhua
ENSXCOG00000006300	-	76	88.166	ENSGMOG00000001876	-	98	88.166	Gadus_morhua
ENSXCOG00000006300	-	100	98.655	ENSGAFG00000003642	-	100	98.655	Gambusia_affinis
ENSXCOG00000006300	-	99	89.189	ENSGAFG00000000884	rab5c	95	91.388	Gambusia_affinis
ENSXCOG00000006300	-	99	86.425	ENSGACG00000008659	rab5c	93	89.806	Gasterosteus_aculeatus
ENSXCOG00000006300	-	99	88.235	ENSGGOG00000005472	RAB5C	96	91.429	Gorilla_gorilla
ENSXCOG00000006300	-	97	92.130	ENSHBUG00000006823	-	95	95.714	Haplochromis_burtoni
ENSXCOG00000006300	-	99	87.838	ENSHBUG00000002014	rab5c	95	89.952	Haplochromis_burtoni
ENSXCOG00000006300	-	99	88.182	ENSHGLG00000012067	RAB5C	96	90.431	Heterocephalus_glaber_female
ENSXCOG00000006300	-	99	90.135	ENSHCOG00000004662	rab5c	93	92.857	Hippocampus_comes
ENSXCOG00000006300	-	96	83.645	ENSHCOG00000020238	-	95	87.500	Hippocampus_comes
ENSXCOG00000006300	-	96	86.512	ENSIPUG00000020082	rab5c	95	90.047	Ictalurus_punctatus
ENSXCOG00000006300	-	99	88.636	ENSSTOG00000006620	RAB5C	96	91.429	Ictidomys_tridecemlineatus
ENSXCOG00000006300	-	99	88.688	ENSJJAG00000021181	Rab5c	96	91.905	Jaculus_jaculus
ENSXCOG00000006300	-	99	88.739	ENSKMAG00000020038	rab5c	95	91.388	Kryptolebias_marmoratus
ENSXCOG00000006300	-	100	93.274	ENSKMAG00000017417	-	95	96.172	Kryptolebias_marmoratus
ENSXCOG00000006300	-	99	90.090	ENSLBEG00000004128	rab5c	95	92.344	Labrus_bergylta
ENSXCOG00000006300	-	99	91.441	ENSLBEG00000010408	-	95	95.215	Labrus_bergylta
ENSXCOG00000006300	-	99	87.727	ENSLOCG00000012566	rab5c	97	90.909	Lepisosteus_oculatus
ENSXCOG00000006300	-	99	88.235	ENSMFAG00000039627	RAB5C	96	91.429	Macaca_fascicularis
ENSXCOG00000006300	-	99	88.235	ENSMNEG00000000355	RAB5C	96	91.429	Macaca_nemestrina
ENSXCOG00000006300	-	99	88.739	ENSMAMG00000022322	rab5c	95	90.909	Mastacembelus_armatus
ENSXCOG00000006300	-	100	91.031	ENSMAMG00000016207	-	95	94.258	Mastacembelus_armatus
ENSXCOG00000006300	-	99	87.838	ENSMZEG00005022735	rab5c	95	89.952	Maylandia_zebra
ENSXCOG00000006300	-	97	92.130	ENSMZEG00005021090	-	95	95.714	Maylandia_zebra
ENSXCOG00000006300	-	99	89.091	ENSMAUG00000015005	Rab5c	96	91.905	Mesocricetus_auratus
ENSXCOG00000006300	-	99	89.091	ENSMICG00000041608	RAB5C	96	91.905	Microcebus_murinus
ENSXCOG00000006300	-	99	88.688	ENSMOCG00000018531	-	96	91.905	Microtus_ochrogaster
ENSXCOG00000006300	-	99	88.235	ENSMMOG00000020621	rab5c	95	90.909	Mola_mola
ENSXCOG00000006300	-	100	89.686	ENSMALG00000022348	-	95	92.823	Monopterus_albus
ENSXCOG00000006300	-	99	81.081	ENSMALG00000006052	rab5c	95	83.099	Monopterus_albus
ENSXCOG00000006300	-	99	89.140	MGP_CAROLIEiJ_G0017184	Rab5c	96	92.381	Mus_caroli
ENSXCOG00000006300	-	99	89.140	ENSMUSG00000019173	Rab5c	96	92.381	Mus_musculus
ENSXCOG00000006300	-	99	89.140	MGP_PahariEiJ_G0018314	Rab5c	96	92.381	Mus_pahari
ENSXCOG00000006300	-	99	89.140	MGP_SPRETEiJ_G0018027	Rab5c	96	92.381	Mus_spretus
ENSXCOG00000006300	-	99	87.838	ENSMPUG00000010554	RAB5C	96	91.429	Mustela_putorius_furo
ENSXCOG00000006300	-	99	88.235	ENSNGAG00000010286	Rab5c	96	91.429	Nannospalax_galili
ENSXCOG00000006300	-	99	88.739	ENSNBRG00000018165	rab5c	95	90.909	Neolamprologus_brichardi
ENSXCOG00000006300	-	97	92.130	ENSNBRG00000016922	-	95	95.714	Neolamprologus_brichardi
ENSXCOG00000006300	-	80	88.827	ENSOPRG00000008255	RAB5C	100	88.827	Ochotona_princeps
ENSXCOG00000006300	-	99	88.636	ENSODEG00000017920	RAB5C	96	90.952	Octodon_degus
ENSXCOG00000006300	-	99	89.189	ENSONIG00000001113	rab5c	95	91.388	Oreochromis_niloticus
ENSXCOG00000006300	-	99	87.387	ENSORLG00000003882	rab5c	95	90.431	Oryzias_latipes
ENSXCOG00000006300	-	99	87.783	ENSORLG00020008388	rab5c	95	90.431	Oryzias_latipes_hni
ENSXCOG00000006300	-	99	87.387	ENSORLG00015021900	rab5c	95	90.431	Oryzias_latipes_hsok
ENSXCOG00000006300	-	99	87.387	ENSOMEG00000023078	rab5c	95	90.431	Oryzias_melastigma
ENSXCOG00000006300	-	99	88.688	ENSOGAG00000009456	RAB5C	96	91.905	Otolemur_garnettii
ENSXCOG00000006300	-	99	88.636	ENSOARG00000018768	RAB5C	96	91.429	Ovis_aries
ENSXCOG00000006300	-	99	88.235	ENSPPAG00000037206	RAB5C	96	91.429	Pan_paniscus
ENSXCOG00000006300	-	99	88.636	ENSPPRG00000005745	RAB5C	96	91.429	Panthera_pardus
ENSXCOG00000006300	-	99	88.636	ENSPTIG00000008177	RAB5C	96	91.429	Panthera_tigris_altaica
ENSXCOG00000006300	-	99	88.235	ENSPTRG00000009194	RAB5C	96	91.429	Pan_troglodytes
ENSXCOG00000006300	-	99	85.455	ENSPKIG00000020112	-	96	88.517	Paramormyrops_kingsleyae
ENSXCOG00000006300	-	99	85.909	ENSPKIG00000001237	-	96	88.995	Paramormyrops_kingsleyae
ENSXCOG00000006300	-	97	88.889	ENSPMGG00000010792	rab5c	94	91.133	Periophthalmus_magnuspinnatus
ENSXCOG00000006300	-	99	88.688	ENSPEMG00000017971	Rab5c	96	91.905	Peromyscus_maniculatus_bairdii
ENSXCOG00000006300	-	85	84.615	ENSPMAG00000000008	rab5c	89	84.615	Petromyzon_marinus
ENSXCOG00000006300	-	88	82.143	ENSPMAG00000007867	rab5c	92	82.564	Petromyzon_marinus
ENSXCOG00000006300	-	99	75.113	ENSPMAG00000001399	rab5c	94	81.313	Petromyzon_marinus
ENSXCOG00000006300	-	99	86.486	ENSPCIG00000020225	-	96	90.431	Phascolarctos_cinereus
ENSXCOG00000006300	-	99	89.189	ENSPLAG00000004790	rab5c	95	91.388	Poecilia_latipinna
ENSXCOG00000006300	-	100	97.758	ENSPLAG00000016333	-	100	97.758	Poecilia_latipinna
ENSXCOG00000006300	-	100	97.758	ENSPMEG00000012614	-	100	97.758	Poecilia_mexicana
ENSXCOG00000006300	-	99	89.189	ENSPMEG00000011336	rab5c	95	91.388	Poecilia_mexicana
ENSXCOG00000006300	-	99	89.189	ENSPREG00000010146	rab5c	95	91.388	Poecilia_reticulata
ENSXCOG00000006300	-	85	96.296	ENSPREG00000022167	-	91	96.791	Poecilia_reticulata
ENSXCOG00000006300	-	99	88.235	ENSPPYG00000008398	RAB5C	96	91.429	Pongo_abelii
ENSXCOG00000006300	-	99	87.727	ENSPCAG00000016412	RAB5C	96	90.476	Procavia_capensis
ENSXCOG00000006300	-	99	88.235	ENSPCOG00000026327	RAB5C	96	91.429	Propithecus_coquereli
ENSXCOG00000006300	-	99	89.091	ENSPVAG00000003867	RAB5C	96	91.905	Pteropus_vampyrus
ENSXCOG00000006300	-	97	92.130	ENSPNYG00000015851	-	95	95.714	Pundamilia_nyererei
ENSXCOG00000006300	-	99	87.838	ENSPNYG00000010615	rab5c	95	89.952	Pundamilia_nyererei
ENSXCOG00000006300	-	96	87.442	ENSPNAG00000002218	-	95	91.089	Pygocentrus_nattereri
ENSXCOG00000006300	-	99	89.686	ENSPNAG00000028138	rab5c	95	91.905	Pygocentrus_nattereri
ENSXCOG00000006300	-	99	89.091	ENSRNOG00000018568	Rab5c	96	91.905	Rattus_norvegicus
ENSXCOG00000006300	-	99	88.235	ENSRBIG00000031376	RAB5C	96	91.429	Rhinopithecus_bieti
ENSXCOG00000006300	-	99	88.235	ENSRROG00000032895	RAB5C	96	91.429	Rhinopithecus_roxellana
ENSXCOG00000006300	-	99	88.235	ENSSBOG00000032552	-	96	91.429	Saimiri_boliviensis_boliviensis
ENSXCOG00000006300	-	99	87.330	ENSSHAG00000005267	-	96	90.909	Sarcophilus_harrisii
ENSXCOG00000006300	-	99	85.000	ENSSFOG00015009988	-	95	87.560	Scleropages_formosus
ENSXCOG00000006300	-	94	90.909	ENSSMAG00000007323	rab5c	95	90.909	Scophthalmus_maximus
ENSXCOG00000006300	-	99	89.189	ENSSDUG00000023008	rab5c	95	91.388	Seriola_dumerili
ENSXCOG00000006300	-	99	88.288	ENSSLDG00000017771	rab5c	95	90.431	Seriola_lalandi_dorsalis
ENSXCOG00000006300	-	99	87.330	ENSSPUG00000012950	-	95	91.346	Sphenodon_punctatus
ENSXCOG00000006300	-	99	89.640	ENSSPAG00000006436	rab5c	95	91.866	Stegastes_partitus
ENSXCOG00000006300	-	99	88.636	ENSSSCG00000032467	RAB5C	96	91.429	Sus_scrofa
ENSXCOG00000006300	-	99	88.288	ENSTRUG00000015590	rab5c	95	90.431	Takifugu_rubripes
ENSXCOG00000006300	-	99	87.273	ENSTNIG00000011711	rab5c	94	89.372	Tetraodon_nigroviridis
ENSXCOG00000006300	-	99	88.636	ENSTBEG00000007092	RAB5C	96	91.429	Tupaia_belangeri
ENSXCOG00000006300	-	99	87.387	ENSTTRG00000006673	RAB5C	96	90.952	Tursiops_truncatus
ENSXCOG00000006300	-	99	87.838	ENSUAMG00000024343	RAB5C	96	91.429	Ursus_americanus
ENSXCOG00000006300	-	99	87.838	ENSUMAG00000023270	RAB5C	96	91.429	Ursus_maritimus
ENSXCOG00000006300	-	100	100.000	ENSXMAG00000022179	-	100	100.000	Xiphophorus_maculatus
ENSXCOG00000006300	-	99	89.189	ENSXMAG00000003266	rab5c	95	91.388	Xiphophorus_maculatus