EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSXCOG00000006461 (Gene tree)
Gene ID: -
Gene Symbol: -
Alias: -
Full Name: -
Gene Type: protein_coding
Species: Xiphophorus_couchianus
Status: putative
Strand: Plus strand
Length: 5960 bases
Position: chrKQ557206.1:19644252-19650211
Accession: -
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSXCOP00000008425	zf-C2H2	PF00096.26	8.1e-10	1	2
ENSXCOP00000008425	zf-C2H2	PF00096.26	8.1e-10	2	2
ENSXCOP00000008425	zf-met	PF12874.7	0.00025	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSXCOT00000008531	-	738	-	ENSXCOP00000008425	245 (aa)	-	-

Gene Model

Click here to download ENSXCOG00000006461's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSXCOG00000006461's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSXCOG00000006461	-	55	47.273	ENSXCOG00000009794	-	74	47.273
ENSXCOG00000006461	-	58	46.341	ENSXCOG00000019443	-	93	46.341
ENSXCOG00000006461	-	60	43.836	ENSXCOG00000007376	-	87	40.260
ENSXCOG00000006461	-	90	40.000	ENSXCOG00000007987	-	87	41.772
ENSXCOG00000006461	-	71	36.986	ENSXCOG00000003499	-	71	36.986
ENSXCOG00000006461	-	63	41.096	ENSXCOG00000019484	-	71	41.096
ENSXCOG00000006461	-	58	45.455	ENSXCOG00000019401	-	64	45.455

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSXCOG00000006461	-	77	53.604	ENSAMXG00000011046	ovol1a	65	54.338	Astyanax_mexicanus
ENSXCOG00000006461	-	77	54.545	ENSDARG00000076472	ovol1a	66	54.545	Danio_rerio
ENSXCOG00000006461	-	67	55.882	ENSDARG00000078256	ovol1b	55	55.882	Danio_rerio
ENSXCOG00000006461	-	78	53.219	ENSELUG00000000343	ovol1a	68	53.219	Esox_lucius
ENSXCOG00000006461	-	78	62.609	ENSFHEG00000002773	-	67	62.609	Fundulus_heteroclitus
ENSXCOG00000006461	-	78	54.955	ENSHCOG00000015860	ovol1a	67	54.955	Hippocampus_comes
ENSXCOG00000006461	-	77	62.162	ENSKMAG00000002605	-	66	62.162	Kryptolebias_marmoratus
ENSXCOG00000006461	-	78	58.772	ENSMAMG00000009768	ovol1a	66	59.649	Mastacembelus_armatus
ENSXCOG00000006461	-	77	57.269	ENSMALG00000008421	ovol1a	76	56.828	Monopterus_albus
ENSXCOG00000006461	-	78	56.923	ENSPKIG00000024718	ovol1a	60	56.923	Paramormyrops_kingsleyae
ENSXCOG00000006461	-	78	79.227	ENSPFOG00000008841	-	74	78.744	Poecilia_formosa
ENSXCOG00000006461	-	77	55.093	ENSPNAG00000020630	ovol1a	64	55.093	Pygocentrus_nattereri
ENSXCOG00000006461	-	78	57.328	ENSSDUG00000009846	ovol1a	66	57.328	Seriola_dumerili