EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSXCOG00000006552 (Gene tree)
Gene ID: -
Gene Symbol: -
Alias: -
Full Name: -
Gene Type: protein_coding
Species: Xiphophorus_couchianus
Status: putative
Strand: Minus strand
Length: 14708 bases
Position: chrKQ557206.1:5042615-5057322
Accession: -
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSXCOP00000008562	RRM_1	PF00076.22	3.8e-13	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSXCOT00000008668	-	891	-	ENSXCOP00000008562	296 (aa)	-	-

Gene Model

Click here to download ENSXCOG00000006552's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSXCOG00000006552's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSXCOG00000006552	-	69	52.743	ENSXCOG00000015156	-	70	53.043

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSXCOG00000006552	-	88	46.403	ENSG00000184672	RALYL	92	78.205	Homo_sapiens
ENSXCOG00000006552	-	81	79.681	ENSAPOG00000006963	hnrnpc	86	81.509	Acanthochromis_polyacanthus
ENSXCOG00000006552	-	82	70.039	ENSACIG00000016568	-	97	64.706	Amphilophus_citrinellus
ENSXCOG00000006552	-	82	82.213	ENSACIG00000000270	-	89	83.083	Amphilophus_citrinellus
ENSXCOG00000006552	-	81	79.283	ENSAOCG00000003896	-	86	81.132	Amphiprion_ocellaris
ENSXCOG00000006552	-	81	69.685	ENSAOCG00000021616	-	89	68.385	Amphiprion_ocellaris
ENSXCOG00000006552	-	81	79.283	ENSAPEG00000001489	-	86	81.132	Amphiprion_percula
ENSXCOG00000006552	-	82	70.196	ENSAPEG00000019962	-	92	68.729	Amphiprion_percula
ENSXCOG00000006552	-	82	71.206	ENSATEG00000018006	-	84	72.263	Anabas_testudineus
ENSXCOG00000006552	-	82	80.237	ENSATEG00000011734	-	89	80.075	Anabas_testudineus
ENSXCOG00000006552	-	71	49.160	ENSAPLG00000015574	RALYL	75	53.333	Anas_platyrhynchos
ENSXCOG00000006552	-	88	45.485	ENSACAG00000028464	RALYL	74	51.570	Anolis_carolinensis
ENSXCOG00000006552	-	88	47.670	ENSANAG00000023383	RALYL	73	56.132	Aotus_nancymaae
ENSXCOG00000006552	-	81	81.673	ENSACLG00000000995	-	86	81.887	Astatotilapia_calliptera
ENSXCOG00000006552	-	81	81.275	ENSACLG00000013636	-	88	81.887	Astatotilapia_calliptera
ENSXCOG00000006552	-	84	70.455	ENSACLG00000005707	-	95	72.085	Astatotilapia_calliptera
ENSXCOG00000006552	-	67	66.667	ENSAMXG00000042946	hnrnpc	95	65.079	Astyanax_mexicanus
ENSXCOG00000006552	-	81	69.721	ENSAMXG00000034915	zgc:55733	91	67.925	Astyanax_mexicanus
ENSXCOG00000006552	-	88	46.763	ENSCJAG00000000402	RALYL	73	54.976	Callithrix_jacchus
ENSXCOG00000006552	-	88	46.735	ENSCPOG00000012314	RALYL	94	46.619	Cavia_porcellus
ENSXCOG00000006552	-	88	48.029	ENSCCAG00000025003	RALYL	76	78.205	Cebus_capucinus
ENSXCOG00000006552	-	88	46.403	ENSCATG00000042145	RALYL	73	54.502	Cercocebus_atys
ENSXCOG00000006552	-	88	46.735	ENSCLAG00000005228	RALYL	74	53.363	Chinchilla_lanigera
ENSXCOG00000006552	-	67	51.770	ENSCHOG00000013228	RALYL	75	52.863	Choloepus_hoffmanni
ENSXCOG00000006552	-	88	46.403	ENSCANG00000039144	RALYL	73	54.502	Colobus_angolensis_palliatus
ENSXCOG00000006552	-	86	46.454	ENSCGRG00001009241	Ralyl	74	53.778	Cricetulus_griseus_chok1gshd
ENSXCOG00000006552	-	76	68.750	ENSCSEG00000021349	-	88	66.434	Cynoglossus_semilaevis
ENSXCOG00000006552	-	69	69.124	ENSCSEG00000019769	-	71	71.090	Cynoglossus_semilaevis
ENSXCOG00000006552	-	81	72.656	ENSCVAG00000016981	-	82	71.587	Cyprinodon_variegatus
ENSXCOG00000006552	-	86	81.712	ENSCVAG00000002797	-	89	81.712	Cyprinodon_variegatus
ENSXCOG00000006552	-	78	68.699	ENSDARG00000053810	hnrnpc	86	68.817	Danio_rerio
ENSXCOG00000006552	-	81	71.315	ENSDARG00000103845	zgc:55733	95	70.342	Danio_rerio
ENSXCOG00000006552	-	88	45.890	ENSDORG00000003721	Ralyl	74	54.018	Dipodomys_ordii
ENSXCOG00000006552	-	51	55.747	ENSETEG00000014028	RALYL	80	57.233	Echinops_telfairi
ENSXCOG00000006552	-	69	47.982	ENSEBUG00000012363	hnrnpc	64	48.848	Eptatretus_burgeri
ENSXCOG00000006552	-	72	46.018	ENSEBUG00000006049	RALYL	88	41.155	Eptatretus_burgeri
ENSXCOG00000006552	-	71	51.261	ENSEEUG00000007202	RALYL	76	53.304	Erinaceus_europaeus
ENSXCOG00000006552	-	74	75.000	ENSELUG00000007714	-	94	70.968	Esox_lucius
ENSXCOG00000006552	-	82	72.549	ENSELUG00000004132	-	91	73.529	Esox_lucius
ENSXCOG00000006552	-	67	55.093	ENSFALG00000008647	RALYL	96	55.093	Ficedula_albicollis
ENSXCOG00000006552	-	82	68.148	ENSFHEG00000007278	-	89	66.102	Fundulus_heteroclitus
ENSXCOG00000006552	-	86	83.333	ENSFHEG00000003605	-	89	82.222	Fundulus_heteroclitus
ENSXCOG00000006552	-	71	51.101	ENSGALG00000036938	RALYL	74	53.778	Gallus_gallus
ENSXCOG00000006552	-	90	68.817	ENSGAFG00000020992	-	92	69.416	Gambusia_affinis
ENSXCOG00000006552	-	86	89.773	ENSGAFG00000020486	-	86	89.773	Gambusia_affinis
ENSXCOG00000006552	-	86	70.370	ENSGACG00000017772	-	99	70.741	Gasterosteus_aculeatus
ENSXCOG00000006552	-	69	72.115	ENSGACG00000018932	-	84	73.892	Gasterosteus_aculeatus
ENSXCOG00000006552	-	88	46.403	ENSGGOG00000000841	RALYL	73	54.502	Gorilla_gorilla
ENSXCOG00000006552	-	83	69.466	ENSHBUG00000010527	-	87	71.174	Haplochromis_burtoni
ENSXCOG00000006552	-	81	82.072	ENSHBUG00000018342	-	86	82.264	Haplochromis_burtoni
ENSXCOG00000006552	-	88	46.735	ENSHGLG00000004866	RALYL	74	53.363	Heterocephalus_glaber_female
ENSXCOG00000006552	-	88	46.735	ENSHGLG00100017480	RALYL	74	53.363	Heterocephalus_glaber_male
ENSXCOG00000006552	-	92	62.162	ENSHCOG00000012333	hnrnpc	96	64.590	Hippocampus_comes
ENSXCOG00000006552	-	83	70.543	ENSIPUG00000011271	hnrnpc	95	72.727	Ictalurus_punctatus
ENSXCOG00000006552	-	81	70.518	ENSIPUG00000008666	zgc:55733	92	72.642	Ictalurus_punctatus
ENSXCOG00000006552	-	86	46.831	ENSSTOG00000012583	RALYL	75	54.018	Ictidomys_tridecemlineatus
ENSXCOG00000006552	-	89	82.353	ENSKMAG00000011170	-	88	82.593	Kryptolebias_marmoratus
ENSXCOG00000006552	-	81	70.472	ENSKMAG00000018265	-	89	68.750	Kryptolebias_marmoratus
ENSXCOG00000006552	-	83	69.767	ENSLBEG00000006193	-	86	69.784	Labrus_bergylta
ENSXCOG00000006552	-	86	72.727	ENSLBEG00000024418	-	89	71.942	Labrus_bergylta
ENSXCOG00000006552	-	86	76.030	ENSLBEG00000006979	-	90	76.030	Labrus_bergylta
ENSXCOG00000006552	-	82	62.214	ENSLOCG00000002560	hnrnpc	93	63.177	Lepisosteus_oculatus
ENSXCOG00000006552	-	88	46.403	ENSMNEG00000033288	RALYL	73	54.502	Macaca_nemestrina
ENSXCOG00000006552	-	88	46.403	ENSMLEG00000038284	RALYL	73	54.502	Mandrillus_leucophaeus
ENSXCOG00000006552	-	81	82.573	ENSMAMG00000012236	-	85	83.529	Mastacembelus_armatus
ENSXCOG00000006552	-	82	70.428	ENSMAMG00000008033	-	95	70.758	Mastacembelus_armatus
ENSXCOG00000006552	-	81	81.673	ENSMZEG00005020460	-	92	75.926	Maylandia_zebra
ENSXCOG00000006552	-	84	70.455	ENSMZEG00005024249	-	89	72.085	Maylandia_zebra
ENSXCOG00000006552	-	86	46.454	ENSMAUG00000015149	Ralyl	74	53.778	Mesocricetus_auratus
ENSXCOG00000006552	-	71	52.212	ENSMICG00000005558	RALYL	79	78.205	Microcebus_murinus
ENSXCOG00000006552	-	86	45.745	ENSMOCG00000017371	Ralyl	74	53.778	Microtus_ochrogaster
ENSXCOG00000006552	-	82	79.365	ENSMMOG00000021465	-	93	79.401	Mola_mola
ENSXCOG00000006552	-	82	70.238	ENSMMOG00000019520	-	89	70.896	Mola_mola
ENSXCOG00000006552	-	82	73.228	ENSMALG00000014623	-	84	73.432	Monopterus_albus
ENSXCOG00000006552	-	82	76.860	ENSMALG00000007520	-	88	78.039	Monopterus_albus
ENSXCOG00000006552	-	86	46.099	ENSMUSG00000039717	Ralyl	92	76.923	Mus_musculus
ENSXCOG00000006552	-	71	49.160	ENSMPUG00000010724	RALYL	74	52.889	Mustela_putorius_furo
ENSXCOG00000006552	-	86	46.454	ENSNGAG00000013375	Ralyl	74	53.778	Nannospalax_galili
ENSXCOG00000006552	-	92	66.781	ENSNBRG00000015676	-	90	70.408	Neolamprologus_brichardi
ENSXCOG00000006552	-	82	81.349	ENSNBRG00000004912	-	88	81.509	Neolamprologus_brichardi
ENSXCOG00000006552	-	88	46.403	ENSNLEG00000002702	RALYL	70	54.502	Nomascus_leucogenys
ENSXCOG00000006552	-	57	48.969	ENSOPRG00000013650	-	98	48.454	Ochotona_princeps
ENSXCOG00000006552	-	88	47.079	ENSODEG00000001012	RALYL	74	53.363	Octodon_degus
ENSXCOG00000006552	-	83	69.084	ENSONIG00000018350	-	87	70.819	Oreochromis_niloticus
ENSXCOG00000006552	-	81	82.072	ENSONIG00000007859	-	94	79.636	Oreochromis_niloticus
ENSXCOG00000006552	-	81	69.084	ENSORLG00000003144	-	88	68.707	Oryzias_latipes
ENSXCOG00000006552	-	81	73.123	ENSORLG00000009999	-	89	73.455	Oryzias_latipes
ENSXCOG00000006552	-	81	72.727	ENSORLG00020018228	hnrnpc	89	73.091	Oryzias_latipes_hni
ENSXCOG00000006552	-	81	73.123	ENSORLG00015019755	-	89	73.455	Oryzias_latipes_hsok
ENSXCOG00000006552	-	81	69.084	ENSORLG00015009460	-	87	68.707	Oryzias_latipes_hsok
ENSXCOG00000006552	-	81	75.099	ENSOMEG00000020488	-	89	74.545	Oryzias_melastigma
ENSXCOG00000006552	-	81	71.765	ENSOMEG00000022665	-	88	70.732	Oryzias_melastigma
ENSXCOG00000006552	-	88	46.403	ENSPPAG00000038705	RALYL	73	54.502	Pan_paniscus
ENSXCOG00000006552	-	71	51.542	ENSPPRG00000018612	RALYL	73	55.607	Panthera_pardus
ENSXCOG00000006552	-	71	51.542	ENSPTIG00000020331	RALYL	73	55.607	Panthera_tigris_altaica
ENSXCOG00000006552	-	88	46.403	ENSPTRG00000020381	RALYL	73	54.502	Pan_troglodytes
ENSXCOG00000006552	-	88	46.403	ENSPANG00000029305	RALYL	73	54.502	Papio_anubis
ENSXCOG00000006552	-	74	73.391	ENSPKIG00000022837	-	86	72.826	Paramormyrops_kingsleyae
ENSXCOG00000006552	-	90	66.436	ENSPKIG00000008592	-	89	68.641	Paramormyrops_kingsleyae
ENSXCOG00000006552	-	71	49.580	ENSPSIG00000011135	RALYL	74	53.333	Pelodiscus_sinensis
ENSXCOG00000006552	-	69	77.209	ENSPMGG00000013144	-	79	76.777	Periophthalmus_magnuspinnatus
ENSXCOG00000006552	-	66	74.272	ENSPMGG00000017774	-	86	60.680	Periophthalmus_magnuspinnatus
ENSXCOG00000006552	-	86	46.454	ENSPEMG00000016447	Ralyl	74	53.778	Peromyscus_maniculatus_bairdii
ENSXCOG00000006552	-	68	50.442	ENSPMAG00000002407	RALYL	98	48.276	Petromyzon_marinus
ENSXCOG00000006552	-	81	71.260	ENSPFOG00000002643	-	85	70.144	Poecilia_formosa
ENSXCOG00000006552	-	86	88.679	ENSPFOG00000001583	-	88	87.454	Poecilia_formosa
ENSXCOG00000006552	-	86	88.636	ENSPLAG00000015305	-	88	87.407	Poecilia_latipinna
ENSXCOG00000006552	-	90	67.708	ENSPLAG00000000061	-	88	69.416	Poecilia_latipinna
ENSXCOG00000006552	-	81	70.866	ENSPMEG00000016524	-	85	69.424	Poecilia_mexicana
ENSXCOG00000006552	-	86	89.394	ENSPMEG00000004802	-	88	88.148	Poecilia_mexicana
ENSXCOG00000006552	-	81	70.472	ENSPREG00000001852	-	92	70.251	Poecilia_reticulata
ENSXCOG00000006552	-	81	87.649	ENSPREG00000007928	-	88	86.667	Poecilia_reticulata
ENSXCOG00000006552	-	88	43.182	ENSPPYG00000018710	-	67	50.000	Pongo_abelii
ENSXCOG00000006552	-	71	51.477	ENSPVAG00000010821	RALYL	93	46.619	Pteropus_vampyrus
ENSXCOG00000006552	-	82	81.746	ENSPNYG00000020293	-	90	81.887	Pundamilia_nyererei
ENSXCOG00000006552	-	83	69.466	ENSPNYG00000003747	-	93	71.174	Pundamilia_nyererei
ENSXCOG00000006552	-	78	69.231	ENSPNAG00000015686	hnrnpc	93	67.870	Pygocentrus_nattereri
ENSXCOG00000006552	-	81	67.442	ENSPNAG00000019200	zgc:55733	85	66.544	Pygocentrus_nattereri
ENSXCOG00000006552	-	88	46.403	ENSRROG00000023925	RALYL	81	76.250	Rhinopithecus_roxellana
ENSXCOG00000006552	-	82	67.829	ENSSFOG00015012015	-	99	65.056	Scleropages_formosus
ENSXCOG00000006552	-	82	69.732	ENSSFOG00015012924	-	79	92.308	Scleropages_formosus
ENSXCOG00000006552	-	80	68.775	ENSSMAG00000011147	-	97	63.971	Scophthalmus_maximus
ENSXCOG00000006552	-	81	75.697	ENSSMAG00000013592	-	87	76.000	Scophthalmus_maximus
ENSXCOG00000006552	-	82	72.157	ENSSDUG00000006730	-	85	71.691	Seriola_dumerili
ENSXCOG00000006552	-	86	80.303	ENSSDUG00000001723	-	86	80.755	Seriola_dumerili
ENSXCOG00000006552	-	82	72.157	ENSSLDG00000007474	-	93	71.691	Seriola_lalandi_dorsalis
ENSXCOG00000006552	-	86	79.924	ENSSLDG00000007454	-	87	80.755	Seriola_lalandi_dorsalis
ENSXCOG00000006552	-	86	79.924	ENSSPAG00000023204	-	86	80.755	Stegastes_partitus
ENSXCOG00000006552	-	82	70.196	ENSSPAG00000013996	-	85	70.545	Stegastes_partitus
ENSXCOG00000006552	-	70	50.215	ENSTGUG00000011689	RALYL	75	52.466	Taeniopygia_guttata
ENSXCOG00000006552	-	82	74.308	ENSTRUG00000020158	-	87	76.030	Takifugu_rubripes
ENSXCOG00000006552	-	82	70.656	ENSTNIG00000007427	-	87	72.426	Tetraodon_nigroviridis
ENSXCOG00000006552	-	81	67.589	ENSTNIG00000000334	-	98	68.284	Tetraodon_nigroviridis
ENSXCOG00000006552	-	69	45.852	ENSTBEG00000005551	RALYL	86	49.333	Tupaia_belangeri
ENSXCOG00000006552	-	71	48.498	ENSTTRG00000015762	RALYL	73	54.091	Tursiops_truncatus
ENSXCOG00000006552	-	71	49.099	ENSVPAG00000008501	RALYL	73	54.067	Vicugna_pacos
ENSXCOG00000006552	-	86	93.182	ENSXMAG00000009333	-	88	91.852	Xiphophorus_maculatus
ENSXCOG00000006552	-	81	70.472	ENSXMAG00000022849	-	90	70.251	Xiphophorus_maculatus