EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: ENSXCOG00000006725 (Gene tree)
Gene ID: -
Gene Symbol: pum3
Alias: cb379|im:7148292|puf-A|sb:cb379|si:ch211-241o7.5
Full Name: pumilio RNA-binding family member 3
Gene Type: protein_coding
Species: Xiphophorus_couchianus
Status: putative
Strand: Minus strand
Length: 6503 bases
Position: chrKQ557223.1:22365129-22371631
Accession: ZDB-GENE-030131-9808
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSXCOP00000008824	CPL	PF08144.11	2e-48	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSXCOT00000008930	-	1791	-	ENSXCOP00000008824	596 (aa)	-	-

Gene Model

Click here to download ENSXCOG00000006725's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSXCOG00000006725's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSXCOG00000006725	pum3	87	58.779	ENSG00000080608	PUM3	98	54.167	Homo_sapiens
ENSXCOG00000006725	pum3	99	68.637	ENSAPOG00000020252	pum3	94	68.780	Acanthochromis_polyacanthus
ENSXCOG00000006725	pum3	87	58.126	ENSAMEG00000012187	PUM3	91	55.351	Ailuropoda_melanoleuca
ENSXCOG00000006725	pum3	93	67.611	ENSACIG00000009786	pum3	94	67.611	Amphilophus_citrinellus
ENSXCOG00000006725	pum3	99	69.458	ENSAOCG00000004439	pum3	94	69.593	Amphiprion_ocellaris
ENSXCOG00000006725	pum3	99	69.458	ENSAPEG00000020523	pum3	94	69.593	Amphiprion_percula
ENSXCOG00000006725	pum3	99	70.315	ENSATEG00000005799	pum3	95	70.608	Anabas_testudineus
ENSXCOG00000006725	pum3	99	55.372	ENSAPLG00000002920	PUM3	97	55.410	Anas_platyrhynchos
ENSXCOG00000006725	pum3	81	59.834	ENSACAG00000003174	PUM3	93	55.357	Anolis_carolinensis
ENSXCOG00000006725	pum3	87	58.588	ENSANAG00000024520	PUM3	91	55.092	Aotus_nancymaae
ENSXCOG00000006725	pum3	100	68.842	ENSACLG00000001017	pum3	95	68.842	Astatotilapia_calliptera
ENSXCOG00000006725	pum3	99	59.016	ENSAMXG00000020911	pum3	95	59.016	Astyanax_mexicanus
ENSXCOG00000006725	pum3	99	53.923	ENSBTAG00000013357	PUM3	91	54.257	Bos_taurus
ENSXCOG00000006725	pum3	81	30.739	WBGene00014165	puf-12	64	30.739	Caenorhabditis_elegans
ENSXCOG00000006725	pum3	87	58.397	ENSCJAG00000010917	PUM3	91	54.925	Callithrix_jacchus
ENSXCOG00000006725	pum3	87	57.170	ENSCAFG00000002035	PUM3	91	54.348	Canis_familiaris
ENSXCOG00000006725	pum3	87	57.170	ENSCAFG00020026867	PUM3	91	54.348	Canis_lupus_dingo
ENSXCOG00000006725	pum3	99	54.257	ENSCHIG00000021559	PUM3	91	54.591	Capra_hircus
ENSXCOG00000006725	pum3	99	53.589	ENSTSYG00000007481	PUM3	91	53.923	Carlito_syrichta
ENSXCOG00000006725	pum3	87	56.679	ENSCAPG00000010592	-	91	53.833	Cavia_aperea
ENSXCOG00000006725	pum3	99	54.925	ENSCPOG00000008552	-	91	54.925	Cavia_porcellus
ENSXCOG00000006725	pum3	87	58.779	ENSCCAG00000032650	PUM3	91	55.092	Cebus_capucinus
ENSXCOG00000006725	pum3	99	54.758	ENSCATG00000024880	PUM3	91	55.092	Cercocebus_atys
ENSXCOG00000006725	pum3	87	58.015	ENSCLAG00000011892	PUM3	91	54.833	Chinchilla_lanigera
ENSXCOG00000006725	pum3	87	58.588	ENSCSAG00000008691	PUM3	91	55.092	Chlorocebus_sabaeus
ENSXCOG00000006725	pum3	83	47.800	ENSCHOG00000002535	PUM3	74	47.800	Choloepus_hoffmanni
ENSXCOG00000006725	pum3	87	60.038	ENSCPBG00000025470	PUM3	80	59.815	Chrysemys_picta_bellii
ENSXCOG00000006725	pum3	92	36.508	ENSCING00000024199	-	99	36.508	Ciona_intestinalis
ENSXCOG00000006725	pum3	97	36.667	ENSCSAVG00000006072	-	99	37.214	Ciona_savignyi
ENSXCOG00000006725	pum3	87	58.779	ENSCANG00000006142	PUM3	91	55.593	Colobus_angolensis_palliatus
ENSXCOG00000006725	pum3	87	58.206	ENSCGRG00001016402	Pum3	91	54.758	Cricetulus_griseus_chok1gshd
ENSXCOG00000006725	pum3	87	58.206	ENSCGRG00000010207	Pum3	91	54.758	Cricetulus_griseus_crigri
ENSXCOG00000006725	pum3	87	65.524	ENSCSEG00000001565	pum3	92	65.725	Cynoglossus_semilaevis
ENSXCOG00000006725	pum3	60	81.166	ENSCVAG00000006550	pum3	88	81.166	Cyprinodon_variegatus
ENSXCOG00000006725	pum3	99	59.603	ENSDARG00000087779	pum3	95	59.603	Danio_rerio
ENSXCOG00000006725	pum3	99	47.404	ENSDNOG00000008157	PUM3	63	48.241	Dasypus_novemcinctus
ENSXCOG00000006725	pum3	87	56.979	ENSETEG00000015331	PUM3	82	57.036	Echinops_telfairi
ENSXCOG00000006725	pum3	87	38.007	ENSEBUG00000011586	pum3	79	38.007	Eptatretus_burgeri
ENSXCOG00000006725	pum3	87	58.206	ENSEASG00005010350	PUM3	88	56.098	Equus_asinus_asinus
ENSXCOG00000006725	pum3	87	58.206	ENSECAG00000017193	PUM3	88	56.098	Equus_caballus
ENSXCOG00000006725	pum3	80	52.391	ENSEEUG00000010314	PUM3	91	50.268	Erinaceus_europaeus
ENSXCOG00000006725	pum3	99	59.113	ENSELUG00000002215	pum3	93	59.113	Esox_lucius
ENSXCOG00000006725	pum3	89	58.724	ENSFALG00000010509	PUM3	83	58.724	Ficedula_albicollis
ENSXCOG00000006725	pum3	87	58.509	ENSFDAG00000021027	PUM3	91	55.333	Fukomys_damarensis
ENSXCOG00000006725	pum3	98	78.846	ENSFHEG00000015576	pum3	94	79.063	Fundulus_heteroclitus
ENSXCOG00000006725	pum3	89	64.972	ENSGMOG00000014217	pum3	99	64.972	Gadus_morhua
ENSXCOG00000006725	pum3	88	59.810	ENSGALG00000010178	PUM3	85	58.984	Gallus_gallus
ENSXCOG00000006725	pum3	60	87.738	ENSGAFG00000001930	pum3	63	87.738	Gambusia_affinis
ENSXCOG00000006725	pum3	90	72.376	ENSGACG00000017878	pum3	99	72.376	Gasterosteus_aculeatus
ENSXCOG00000006725	pum3	98	54.860	ENSGAGG00000018983	PUM3	97	55.025	Gopherus_agassizii
ENSXCOG00000006725	pum3	87	58.588	ENSGGOG00000006143	PUM3	91	54.941	Gorilla_gorilla
ENSXCOG00000006725	pum3	100	63.561	ENSHBUG00000012903	pum3	92	63.516	Haplochromis_burtoni
ENSXCOG00000006725	pum3	96	52.504	ENSHGLG00000015868	-	91	54.758	Heterocephalus_glaber_female
ENSXCOG00000006725	pum3	96	52.504	ENSHGLG00100018825	PUM3	91	54.758	Heterocephalus_glaber_male
ENSXCOG00000006725	pum3	100	64.724	ENSHCOG00000010306	pum3	95	65.039	Hippocampus_comes
ENSXCOG00000006725	pum3	99	59.574	ENSIPUG00000024801	pum3	95	61.258	Ictalurus_punctatus
ENSXCOG00000006725	pum3	87	58.206	ENSSTOG00000009586	PUM3	91	55.000	Ictidomys_tridecemlineatus
ENSXCOG00000006725	pum3	98	53.794	ENSJJAG00000012563	Pum3	91	53.794	Jaculus_jaculus
ENSXCOG00000006725	pum3	98	73.032	ENSKMAG00000010277	pum3	95	73.267	Kryptolebias_marmoratus
ENSXCOG00000006725	pum3	98	67.488	ENSLBEG00000012213	pum3	94	67.638	Labrus_bergylta
ENSXCOG00000006725	pum3	96	54.685	ENSLACG00000008312	PUM3	93	53.859	Latimeria_chalumnae
ENSXCOG00000006725	pum3	97	60.449	ENSLOCG00000012529	pum3	90	60.449	Lepisosteus_oculatus
ENSXCOG00000006725	pum3	99	53.897	ENSLAFG00000017341	PUM3	93	54.455	Loxodonta_africana
ENSXCOG00000006725	pum3	87	58.588	ENSMFAG00000001430	PUM3	91	55.092	Macaca_fascicularis
ENSXCOG00000006725	pum3	87	58.588	ENSMMUG00000002362	PUM3	90	55.092	Macaca_mulatta
ENSXCOG00000006725	pum3	87	58.588	ENSMNEG00000035288	PUM3	91	55.092	Macaca_nemestrina
ENSXCOG00000006725	pum3	87	58.588	ENSMLEG00000034820	PUM3	91	55.092	Mandrillus_leucophaeus
ENSXCOG00000006725	pum3	99	68.301	ENSMAMG00000022861	pum3	95	68.447	Mastacembelus_armatus
ENSXCOG00000006725	pum3	100	69.231	ENSMZEG00005014205	pum3	92	69.231	Maylandia_zebra
ENSXCOG00000006725	pum3	88	54.237	ENSMGAG00000002255	PUM3	89	53.711	Meleagris_gallopavo
ENSXCOG00000006725	pum3	87	58.015	ENSMAUG00000009733	Pum3	91	55.150	Mesocricetus_auratus
ENSXCOG00000006725	pum3	87	57.634	ENSMICG00000045916	PUM3	79	54.257	Microcebus_murinus
ENSXCOG00000006725	pum3	99	52.562	ENSMOCG00000014830	-	93	52.562	Microtus_ochrogaster
ENSXCOG00000006725	pum3	87	58.206	ENSMOCG00000019519	-	91	55.150	Microtus_ochrogaster
ENSXCOG00000006725	pum3	100	62.908	ENSMMOG00000012184	pum3	98	62.908	Mola_mola
ENSXCOG00000006725	pum3	87	54.685	ENSMODG00000015417	PUM3	78	53.521	Monodelphis_domestica
ENSXCOG00000006725	pum3	100	68.498	ENSMALG00000022164	pum3	91	68.852	Monopterus_albus
ENSXCOG00000006725	pum3	87	56.870	MGP_CAROLIEiJ_G0022845	Pum3	91	54.153	Mus_caroli
ENSXCOG00000006725	pum3	87	56.489	ENSMUSG00000041360	Pum3	91	53.821	Mus_musculus
ENSXCOG00000006725	pum3	87	56.679	MGP_PahariEiJ_G0014338	Pum3	91	53.821	Mus_pahari
ENSXCOG00000006725	pum3	87	56.679	MGP_SPRETEiJ_G0023763	Pum3	91	53.987	Mus_spretus
ENSXCOG00000006725	pum3	99	53.333	ENSMPUG00000005125	PUM3	91	53.333	Mustela_putorius_furo
ENSXCOG00000006725	pum3	88	58.509	ENSMLUG00000002309	PUM3	91	54.866	Myotis_lucifugus
ENSXCOG00000006725	pum3	86	58.140	ENSNGAG00000019468	Pum3	91	54.209	Nannospalax_galili
ENSXCOG00000006725	pum3	100	66.338	ENSNBRG00000021370	pum3	93	66.338	Neolamprologus_brichardi
ENSXCOG00000006725	pum3	87	58.779	ENSNLEG00000008712	PUM3	91	55.259	Nomascus_leucogenys
ENSXCOG00000006725	pum3	61	57.018	ENSMEUG00000013606	-	78	55.870	Notamacropus_eugenii
ENSXCOG00000006725	pum3	58	45.533	ENSOPRG00000004225	-	63	43.839	Ochotona_princeps
ENSXCOG00000006725	pum3	87	58.015	ENSODEG00000003625	-	91	54.591	Octodon_degus
ENSXCOG00000006725	pum3	99	49.668	ENSODEG00000016477	-	91	49.668	Octodon_degus
ENSXCOG00000006725	pum3	100	69.268	ENSONIG00000012733	pum3	95	69.268	Oreochromis_niloticus
ENSXCOG00000006725	pum3	87	55.048	ENSOANG00000014995	PUM3	98	55.140	Ornithorhynchus_anatinus
ENSXCOG00000006725	pum3	87	57.061	ENSOCUG00000026104	-	93	53.897	Oryctolagus_cuniculus
ENSXCOG00000006725	pum3	87	57.252	ENSOCUG00000004189	-	92	54.063	Oryctolagus_cuniculus
ENSXCOG00000006725	pum3	97	68.259	ENSORLG00000014935	pum3	95	67.264	Oryzias_latipes
ENSXCOG00000006725	pum3	98	66.887	ENSORLG00020002841	pum3	95	67.101	Oryzias_latipes_hni
ENSXCOG00000006725	pum3	100	67.590	ENSORLG00015015906	pum3	95	67.590	Oryzias_latipes_hsok
ENSXCOG00000006725	pum3	99	66.007	ENSOMEG00000009427	pum3	95	66.124	Oryzias_melastigma
ENSXCOG00000006725	pum3	99	51.037	ENSOGAG00000008125	-	91	54.090	Otolemur_garnettii
ENSXCOG00000006725	pum3	83	42.659	ENSOGAG00000033481	-	81	42.529	Otolemur_garnettii
ENSXCOG00000006725	pum3	99	54.257	ENSOARG00000013337	PUM3	91	54.591	Ovis_aries
ENSXCOG00000006725	pum3	87	58.588	ENSPPAG00000041337	PUM3	91	54.941	Pan_paniscus
ENSXCOG00000006725	pum3	87	57.553	ENSPPRG00000000809	PUM3	91	54.515	Panthera_pardus
ENSXCOG00000006725	pum3	87	57.744	ENSPTIG00000021934	PUM3	91	54.682	Panthera_tigris_altaica
ENSXCOG00000006725	pum3	87	58.779	ENSPTRG00000020735	PUM3	91	55.109	Pan_troglodytes
ENSXCOG00000006725	pum3	87	58.779	ENSPANG00000025118	PUM3	91	55.259	Papio_anubis
ENSXCOG00000006725	pum3	100	57.423	ENSPKIG00000022249	pum3	99	55.537	Paramormyrops_kingsleyae
ENSXCOG00000006725	pum3	87	60.229	ENSPSIG00000016272	PUM3	92	57.143	Pelodiscus_sinensis
ENSXCOG00000006725	pum3	82	68.016	ENSPMGG00000021261	pum3	99	68.016	Periophthalmus_magnuspinnatus
ENSXCOG00000006725	pum3	99	45.394	ENSPEMG00000019340	-	91	45.394	Peromyscus_maniculatus_bairdii
ENSXCOG00000006725	pum3	92	54.727	ENSPCIG00000030598	PUM3	73	54.727	Phascolarctos_cinereus
ENSXCOG00000006725	pum3	100	84.641	ENSPFOG00000001719	pum3	94	84.641	Poecilia_formosa
ENSXCOG00000006725	pum3	100	89.535	ENSPLAG00000020010	pum3	95	89.867	Poecilia_latipinna
ENSXCOG00000006725	pum3	100	88.704	ENSPMEG00000017451	pum3	95	89.037	Poecilia_mexicana
ENSXCOG00000006725	pum3	59	85.000	ENSPREG00000019478	-	80	82.632	Poecilia_reticulata
ENSXCOG00000006725	pum3	87	58.969	ENSPPYG00000019255	PUM3	91	55.276	Pongo_abelii
ENSXCOG00000006725	pum3	87	51.048	ENSPCAG00000005797	PUM3	86	48.495	Procavia_capensis
ENSXCOG00000006725	pum3	87	57.443	ENSPCOG00000027325	PUM3	91	54.591	Propithecus_coquereli
ENSXCOG00000006725	pum3	88	57.925	ENSPVAG00000016135	PUM3	78	57.865	Pteropus_vampyrus
ENSXCOG00000006725	pum3	100	68.842	ENSPNYG00000016124	pum3	95	68.842	Pundamilia_nyererei
ENSXCOG00000006725	pum3	99	58.444	ENSPNAG00000026524	pum3	95	58.940	Pygocentrus_nattereri
ENSXCOG00000006725	pum3	99	51.520	ENSRNOG00000012574	Pum3	91	54.983	Rattus_norvegicus
ENSXCOG00000006725	pum3	99	53.987	ENSRNOG00000048356	RGD1308750	91	54.651	Rattus_norvegicus
ENSXCOG00000006725	pum3	87	58.397	ENSRBIG00000036924	PUM3	91	55.092	Rhinopithecus_bieti
ENSXCOG00000006725	pum3	87	58.588	ENSRROG00000041089	PUM3	91	55.426	Rhinopithecus_roxellana
ENSXCOG00000006725	pum3	87	58.397	ENSSBOG00000028066	PUM3	91	54.925	Saimiri_boliviensis_boliviensis
ENSXCOG00000006725	pum3	99	50.397	ENSSHAG00000003730	PUM3	85	54.414	Sarcophilus_harrisii
ENSXCOG00000006725	pum3	99	57.541	ENSSFOG00015018778	pum3	98	55.082	Scleropages_formosus
ENSXCOG00000006725	pum3	92	71.454	ENSSMAG00000013236	pum3	95	69.331	Scophthalmus_maximus
ENSXCOG00000006725	pum3	98	70.724	ENSSDUG00000001887	pum3	93	70.989	Seriola_dumerili
ENSXCOG00000006725	pum3	98	70.559	ENSSLDG00000015766	pum3	94	70.827	Seriola_lalandi_dorsalis
ENSXCOG00000006725	pum3	98	49.749	ENSSARG00000000579	PUM3	96	50.915	Sorex_araneus
ENSXCOG00000006725	pum3	99	55.444	ENSSPUG00000001707	PUM3	94	55.444	Sphenodon_punctatus
ENSXCOG00000006725	pum3	98	69.256	ENSSPAG00000003976	pum3	95	69.544	Stegastes_partitus
ENSXCOG00000006725	pum3	99	53.846	ENSSSCG00000005227	PUM3	91	54.090	Sus_scrofa
ENSXCOG00000006725	pum3	99	53.259	ENSTGUG00000005339	PUM3	97	55.056	Taeniopygia_guttata
ENSXCOG00000006725	pum3	100	68.277	ENSTRUG00000004074	pum3	94	68.277	Takifugu_rubripes
ENSXCOG00000006725	pum3	99	69.374	ENSTNIG00000010325	pum3	94	69.514	Tetraodon_nigroviridis
ENSXCOG00000006725	pum3	87	44.000	ENSTBEG00000013058	PUM3	82	44.299	Tupaia_belangeri
ENSXCOG00000006725	pum3	99	49.085	ENSTTRG00000001062	PUM3	87	49.418	Tursiops_truncatus
ENSXCOG00000006725	pum3	88	53.774	ENSUMAG00000018443	PUM3	99	53.774	Ursus_maritimus
ENSXCOG00000006725	pum3	99	54.181	ENSVPAG00000010766	PUM3	90	54.515	Vicugna_pacos
ENSXCOG00000006725	pum3	87	57.361	ENSVVUG00000006527	PUM3	91	54.515	Vulpes_vulpes
ENSXCOG00000006725	pum3	98	44.706	ENSXETG00000011707	pum3	92	45.033	Xenopus_tropicalis
ENSXCOG00000006725	pum3	100	95.840	ENSXMAG00000002926	pum3	95	95.840	Xiphophorus_maculatus