EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: ENSXCOG00000007393 (Gene tree)
Gene ID: -
Gene Symbol: prpf38a
Alias: fa04h11|fc83e08|wu:fa04h11|wu:fc83e08|zgc:92059
Full Name: pre-mRNA processing factor 38A
Gene Type: protein_coding
Species: Xiphophorus_couchianus
Status: putative
Strand: Minus strand
Length: 4534 bases
Position: chrKQ557224.1:26304347-26308880
Accession: ZDB-GENE-040801-225
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSXCOP00000009722	PRP38	PF03371.15	9.9e-58	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSXCOT00000009836	-	900	-	ENSXCOP00000009722	299 (aa)	-	-

Gene Model

Click here to download ENSXCOG00000007393's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSXCOG00000007393's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSXCOG00000007393	prpf38a	77	87.554	ENSG00000134748	PRPF38A	71	88.341	Homo_sapiens
ENSXCOG00000007393	prpf38a	74	94.619	ENSAPOG00000011652	prpf38a	72	94.619	Acanthochromis_polyacanthus
ENSXCOG00000007393	prpf38a	77	87.554	ENSAMEG00000009319	PRPF38A	71	88.341	Ailuropoda_melanoleuca
ENSXCOG00000007393	prpf38a	100	85.855	ENSACIG00000012292	prpf38a	72	93.182	Amphilophus_citrinellus
ENSXCOG00000007393	prpf38a	74	94.619	ENSAOCG00000018004	prpf38a	72	94.619	Amphiprion_ocellaris
ENSXCOG00000007393	prpf38a	74	94.619	ENSAPEG00000021414	prpf38a	72	94.619	Amphiprion_percula
ENSXCOG00000007393	prpf38a	75	92.478	ENSATEG00000004608	prpf38a	72	92.478	Anabas_testudineus
ENSXCOG00000007393	prpf38a	56	85.119	ENSAPLG00000005827	PRPF38A	63	86.076	Anas_platyrhynchos
ENSXCOG00000007393	prpf38a	77	85.408	ENSACAG00000008249	PRPF38A	73	85.652	Anolis_carolinensis
ENSXCOG00000007393	prpf38a	77	87.554	ENSANAG00000027839	PRPF38A	71	88.341	Aotus_nancymaae
ENSXCOG00000007393	prpf38a	100	61.165	ENSANAG00000029204	-	70	56.637	Aotus_nancymaae
ENSXCOG00000007393	prpf38a	74	91.928	ENSACLG00000021595	prpf38a	74	91.928	Astatotilapia_calliptera
ENSXCOG00000007393	prpf38a	75	91.667	ENSAMXG00000029274	prpf38a	72	91.667	Astyanax_mexicanus
ENSXCOG00000007393	prpf38a	86	83.077	ENSBTAG00000002720	PRPF38A	75	88.341	Bos_taurus
ENSXCOG00000007393	prpf38a	65	61.929	WBGene00008380	prp-38	59	63.684	Caenorhabditis_elegans
ENSXCOG00000007393	prpf38a	86	83.462	ENSCJAG00000021594	PRPF38A	74	88.341	Callithrix_jacchus
ENSXCOG00000007393	prpf38a	77	87.554	ENSCAFG00000003740	PRPF38A	71	88.341	Canis_familiaris
ENSXCOG00000007393	prpf38a	77	87.554	ENSCAFG00020010939	PRPF38A	71	88.341	Canis_lupus_dingo
ENSXCOG00000007393	prpf38a	77	87.554	ENSCHIG00000024730	PRPF38A	71	88.341	Capra_hircus
ENSXCOG00000007393	prpf38a	77	87.554	ENSTSYG00000009868	-	71	88.341	Carlito_syrichta
ENSXCOG00000007393	prpf38a	63	84.211	ENSTSYG00000031994	-	63	85.000	Carlito_syrichta
ENSXCOG00000007393	prpf38a	100	84.026	ENSCPOG00000005079	PRPF38A	71	88.341	Cavia_porcellus
ENSXCOG00000007393	prpf38a	77	87.554	ENSCCAG00000026502	PRPF38A	71	88.341	Cebus_capucinus
ENSXCOG00000007393	prpf38a	100	54.839	ENSCATG00000044190	-	57	56.085	Cercocebus_atys
ENSXCOG00000007393	prpf38a	77	87.554	ENSCATG00000032296	PRPF38A	71	88.341	Cercocebus_atys
ENSXCOG00000007393	prpf38a	77	87.554	ENSCLAG00000005816	PRPF38A	71	88.341	Chinchilla_lanigera
ENSXCOG00000007393	prpf38a	77	87.124	ENSCPBG00000014791	PRPF38A	71	87.892	Chrysemys_picta_bellii
ENSXCOG00000007393	prpf38a	77	66.953	ENSCSAVG00000009580	-	62	74.211	Ciona_savignyi
ENSXCOG00000007393	prpf38a	77	87.554	ENSCANG00000032608	PRPF38A	74	88.341	Colobus_angolensis_palliatus
ENSXCOG00000007393	prpf38a	77	87.554	ENSCGRG00001018502	-	71	88.341	Cricetulus_griseus_chok1gshd
ENSXCOG00000007393	prpf38a	85	73.256	ENSCGRG00001002557	-	74	75.225	Cricetulus_griseus_chok1gshd
ENSXCOG00000007393	prpf38a	77	87.554	ENSCGRG00000014868	Prpf38a	71	88.341	Cricetulus_griseus_crigri
ENSXCOG00000007393	prpf38a	74	94.091	ENSCSEG00000001269	prpf38a	76	94.091	Cynoglossus_semilaevis
ENSXCOG00000007393	prpf38a	100	94.534	ENSCVAG00000012305	prpf38a	100	94.534	Cyprinodon_variegatus
ENSXCOG00000007393	prpf38a	75	91.228	ENSDARG00000039213	prpf38a	72	91.228	Danio_rerio
ENSXCOG00000007393	prpf38a	77	87.554	ENSDNOG00000042326	PRPF38A	72	88.341	Dasypus_novemcinctus
ENSXCOG00000007393	prpf38a	91	70.652	ENSDORG00000023691	-	75	80.455	Dipodomys_ordii
ENSXCOG00000007393	prpf38a	77	72.294	ENSDORG00000023857	-	66	72.398	Dipodomys_ordii
ENSXCOG00000007393	prpf38a	91	70.652	ENSDORG00000025371	-	75	80.455	Dipodomys_ordii
ENSXCOG00000007393	prpf38a	67	71.921	FBgn0050342	Prp38	57	74.211	Drosophila_melanogaster
ENSXCOG00000007393	prpf38a	79	79.668	ENSEBUG00000012588	prpf38a	71	79.556	Eptatretus_burgeri
ENSXCOG00000007393	prpf38a	77	87.554	ENSEASG00005014427	PRPF38A	71	88.341	Equus_asinus_asinus
ENSXCOG00000007393	prpf38a	77	87.554	ENSECAG00000022628	PRPF38A	71	88.341	Equus_caballus
ENSXCOG00000007393	prpf38a	75	90.708	ENSELUG00000021094	prpf38a	76	90.708	Esox_lucius
ENSXCOG00000007393	prpf38a	77	87.554	ENSFCAG00000002518	PRPF38A	71	88.341	Felis_catus
ENSXCOG00000007393	prpf38a	99	77.705	ENSFALG00000003612	-	99	74.419	Ficedula_albicollis
ENSXCOG00000007393	prpf38a	86	73.063	ENSFALG00000005598	-	66	86.667	Ficedula_albicollis
ENSXCOG00000007393	prpf38a	100	77.460	ENSFDAG00000011287	PRPF38A	72	88.341	Fukomys_damarensis
ENSXCOG00000007393	prpf38a	72	95.890	ENSFHEG00000014317	prpf38a	99	93.919	Fundulus_heteroclitus
ENSXCOG00000007393	prpf38a	55	96.386	ENSGMOG00000011384	prpf38a	54	96.386	Gadus_morhua
ENSXCOG00000007393	prpf38a	77	87.983	ENSGALG00000010627	PRPF38A	71	88.789	Gallus_gallus
ENSXCOG00000007393	prpf38a	100	95.498	ENSGAFG00000012422	prpf38a	100	95.498	Gambusia_affinis
ENSXCOG00000007393	prpf38a	74	90.667	ENSGACG00000005423	prpf38a	72	90.667	Gasterosteus_aculeatus
ENSXCOG00000007393	prpf38a	77	87.124	ENSGAGG00000020547	PRPF38A	71	87.892	Gopherus_agassizii
ENSXCOG00000007393	prpf38a	77	87.554	ENSGGOG00000003940	PRPF38A	71	88.341	Gorilla_gorilla
ENSXCOG00000007393	prpf38a	63	93.717	ENSHBUG00000020572	prpf38a	80	93.684	Haplochromis_burtoni
ENSXCOG00000007393	prpf38a	77	87.554	ENSHGLG00000000475	PRPF38A	71	88.341	Heterocephalus_glaber_female
ENSXCOG00000007393	prpf38a	100	73.443	ENSHGLG00000007918	-	71	77.027	Heterocephalus_glaber_female
ENSXCOG00000007393	prpf38a	100	73.443	ENSHGLG00100003928	-	71	77.027	Heterocephalus_glaber_male
ENSXCOG00000007393	prpf38a	77	87.554	ENSHGLG00100008935	PRPF38A	71	88.341	Heterocephalus_glaber_male
ENSXCOG00000007393	prpf38a	61	91.304	ENSHCOG00000020781	prpf38a	59	91.579	Hippocampus_comes
ENSXCOG00000007393	prpf38a	77	89.744	ENSIPUG00000005757	prpf38a	71	89.732	Ictalurus_punctatus
ENSXCOG00000007393	prpf38a	77	87.554	ENSSTOG00000015610	PRPF38A	71	88.341	Ictidomys_tridecemlineatus
ENSXCOG00000007393	prpf38a	77	86.695	ENSJJAG00000015811	Prpf38a	71	87.444	Jaculus_jaculus
ENSXCOG00000007393	prpf38a	74	95.067	ENSKMAG00000006588	prpf38a	72	95.067	Kryptolebias_marmoratus
ENSXCOG00000007393	prpf38a	95	84.797	ENSLBEG00000020585	prpf38a	72	91.150	Labrus_bergylta
ENSXCOG00000007393	prpf38a	75	87.281	ENSLACG00000011495	PRPF38A	72	87.281	Latimeria_chalumnae
ENSXCOG00000007393	prpf38a	100	82.958	ENSLOCG00000006262	prpf38a	72	87.946	Lepisosteus_oculatus
ENSXCOG00000007393	prpf38a	77	87.554	ENSLAFG00000025862	PRPF38A	71	88.341	Loxodonta_africana
ENSXCOG00000007393	prpf38a	86	83.462	ENSMFAG00000039449	PRPF38A	74	88.341	Macaca_fascicularis
ENSXCOG00000007393	prpf38a	63	85.263	ENSMMUG00000014333	PRPF38A	64	86.111	Macaca_mulatta
ENSXCOG00000007393	prpf38a	100	54.516	ENSMNEG00000040242	-	65	58.173	Macaca_nemestrina
ENSXCOG00000007393	prpf38a	77	87.554	ENSMNEG00000031221	PRPF38A	71	88.341	Macaca_nemestrina
ENSXCOG00000007393	prpf38a	77	87.554	ENSMLEG00000041105	PRPF38A	71	88.341	Mandrillus_leucophaeus
ENSXCOG00000007393	prpf38a	74	94.170	ENSMAMG00000015431	prpf38a	74	94.170	Mastacembelus_armatus
ENSXCOG00000007393	prpf38a	74	91.928	ENSMZEG00005017838	prpf38a	72	91.928	Maylandia_zebra
ENSXCOG00000007393	prpf38a	77	87.983	ENSMGAG00000011176	PRPF38A	74	88.789	Meleagris_gallopavo
ENSXCOG00000007393	prpf38a	85	79.323	ENSMAUG00000018029	-	84	84.305	Mesocricetus_auratus
ENSXCOG00000007393	prpf38a	77	87.554	ENSMICG00000014193	PRPF38A	71	88.341	Microcebus_murinus
ENSXCOG00000007393	prpf38a	77	87.554	ENSMOCG00000013080	Prpf38a	71	88.341	Microtus_ochrogaster
ENSXCOG00000007393	prpf38a	75	92.511	ENSMMOG00000016972	prpf38a	81	92.308	Mola_mola
ENSXCOG00000007393	prpf38a	77	84.615	ENSMODG00000000644	PRPF38A	71	85.268	Monodelphis_domestica
ENSXCOG00000007393	prpf38a	75	93.363	ENSMALG00000019363	prpf38a	70	93.363	Monopterus_albus
ENSXCOG00000007393	prpf38a	77	87.124	MGP_CAROLIEiJ_G0026269	Prpf38a	71	87.892	Mus_caroli
ENSXCOG00000007393	prpf38a	77	87.124	ENSMUSG00000063800	Prpf38a	71	87.892	Mus_musculus
ENSXCOG00000007393	prpf38a	77	87.124	MGP_PahariEiJ_G0028602	Prpf38a	71	87.892	Mus_pahari
ENSXCOG00000007393	prpf38a	100	74.841	MGP_SPRETEiJ_G0027238	Prpf38a	93	91.579	Mus_spretus
ENSXCOG00000007393	prpf38a	77	87.554	ENSMPUG00000006896	PRPF38A	71	88.341	Mustela_putorius_furo
ENSXCOG00000007393	prpf38a	100	84.839	ENSNGAG00000011884	Prpf38a	72	88.341	Nannospalax_galili
ENSXCOG00000007393	prpf38a	74	93.182	ENSNBRG00000004013	prpf38a	71	93.182	Neolamprologus_brichardi
ENSXCOG00000007393	prpf38a	100	54.808	ENSNLEG00000033398	-	60	51.598	Nomascus_leucogenys
ENSXCOG00000007393	prpf38a	69	86.667	ENSNLEG00000017999	PRPF38A	63	87.500	Nomascus_leucogenys
ENSXCOG00000007393	prpf38a	97	58.416	ENSNLEG00000012592	-	67	57.207	Nomascus_leucogenys
ENSXCOG00000007393	prpf38a	77	82.833	ENSMEUG00000003860	PRPF38A	71	83.408	Notamacropus_eugenii
ENSXCOG00000007393	prpf38a	76	87.826	ENSOPRG00000008985	PRPF38A	92	88.341	Ochotona_princeps
ENSXCOG00000007393	prpf38a	77	87.554	ENSODEG00000005869	PRPF38A	71	88.341	Octodon_degus
ENSXCOG00000007393	prpf38a	74	91.480	ENSONIG00000007816	prpf38a	72	91.480	Oreochromis_niloticus
ENSXCOG00000007393	prpf38a	77	46.154	ENSOANG00000009541	-	71	45.089	Ornithorhynchus_anatinus
ENSXCOG00000007393	prpf38a	77	87.554	ENSOCUG00000000963	PRPF38A	71	88.341	Oryctolagus_cuniculus
ENSXCOG00000007393	prpf38a	96	87.584	ENSORLG00000013485	prpf38a	80	94.690	Oryzias_latipes
ENSXCOG00000007393	prpf38a	96	87.584	ENSORLG00020002130	prpf38a	80	94.690	Oryzias_latipes_hni
ENSXCOG00000007393	prpf38a	96	87.248	ENSORLG00015021393	prpf38a	76	94.248	Oryzias_latipes_hsok
ENSXCOG00000007393	prpf38a	100	87.460	ENSOMEG00000016333	prpf38a	72	93.805	Oryzias_melastigma
ENSXCOG00000007393	prpf38a	77	87.554	ENSOGAG00000005423	PRPF38A	71	88.341	Otolemur_garnettii
ENSXCOG00000007393	prpf38a	77	87.554	ENSOARG00000005373	PRPF38A	71	88.341	Ovis_aries
ENSXCOG00000007393	prpf38a	100	67.412	ENSPPAG00000033867	-	68	68.919	Pan_paniscus
ENSXCOG00000007393	prpf38a	77	87.554	ENSPPAG00000030905	PRPF38A	71	88.341	Pan_paniscus
ENSXCOG00000007393	prpf38a	77	87.554	ENSPPRG00000013268	PRPF38A	71	88.341	Panthera_pardus
ENSXCOG00000007393	prpf38a	77	87.554	ENSPTIG00000015419	PRPF38A	71	88.341	Panthera_tigris_altaica
ENSXCOG00000007393	prpf38a	86	83.462	ENSPTRG00000000739	PRPF38A	74	88.341	Pan_troglodytes
ENSXCOG00000007393	prpf38a	77	87.554	ENSPANG00000015483	PRPF38A	71	88.341	Papio_anubis
ENSXCOG00000007393	prpf38a	100	85.161	ENSPKIG00000011439	prpf38a	73	90.265	Paramormyrops_kingsleyae
ENSXCOG00000007393	prpf38a	77	86.695	ENSPSIG00000017487	PRPF38A	71	87.444	Pelodiscus_sinensis
ENSXCOG00000007393	prpf38a	72	93.548	ENSPMGG00000021352	prpf38a	76	93.213	Periophthalmus_magnuspinnatus
ENSXCOG00000007393	prpf38a	77	87.554	ENSPEMG00000023277	-	71	88.341	Peromyscus_maniculatus_bairdii
ENSXCOG00000007393	prpf38a	100	75.633	ENSPEMG00000011212	-	70	81.696	Peromyscus_maniculatus_bairdii
ENSXCOG00000007393	prpf38a	77	84.188	ENSPCIG00000022369	-	71	84.821	Phascolarctos_cinereus
ENSXCOG00000007393	prpf38a	100	95.498	ENSPFOG00000004248	prpf38a	100	95.498	Poecilia_formosa
ENSXCOG00000007393	prpf38a	100	95.498	ENSPLAG00000010328	prpf38a	100	95.498	Poecilia_latipinna
ENSXCOG00000007393	prpf38a	100	95.498	ENSPMEG00000011804	prpf38a	100	95.498	Poecilia_mexicana
ENSXCOG00000007393	prpf38a	84	80.657	ENSPREG00000002835	prpf38a	58	96.842	Poecilia_reticulata
ENSXCOG00000007393	prpf38a	77	76.891	ENSPPYG00000001348	PRPF38A	71	77.193	Pongo_abelii
ENSXCOG00000007393	prpf38a	77	87.124	ENSPCAG00000013328	PRPF38A	71	87.892	Procavia_capensis
ENSXCOG00000007393	prpf38a	77	87.554	ENSPCOG00000016387	-	71	88.341	Propithecus_coquereli
ENSXCOG00000007393	prpf38a	100	65.902	ENSPCOG00000020709	-	64	78.421	Propithecus_coquereli
ENSXCOG00000007393	prpf38a	77	87.554	ENSPVAG00000009803	PRPF38A	71	88.341	Pteropus_vampyrus
ENSXCOG00000007393	prpf38a	74	91.928	ENSPNYG00000005571	prpf38a	72	91.928	Pundamilia_nyererei
ENSXCOG00000007393	prpf38a	75	90.789	ENSPNAG00000010399	prpf38a	72	90.789	Pygocentrus_nattereri
ENSXCOG00000007393	prpf38a	77	87.983	ENSRNOG00000009451	Prpf38a	71	88.789	Rattus_norvegicus
ENSXCOG00000007393	prpf38a	100	51.603	ENSRBIG00000034053	-	64	72.951	Rhinopithecus_bieti
ENSXCOG00000007393	prpf38a	77	87.554	ENSRBIG00000036442	PRPF38A	74	88.341	Rhinopithecus_bieti
ENSXCOG00000007393	prpf38a	98	70.333	ENSRROG00000040003	-	72	73.094	Rhinopithecus_roxellana
ENSXCOG00000007393	prpf38a	77	87.554	ENSRROG00000032788	PRPF38A	71	88.341	Rhinopithecus_roxellana
ENSXCOG00000007393	prpf38a	77	87.554	ENSSBOG00000019515	PRPF38A	71	88.341	Saimiri_boliviensis_boliviensis
ENSXCOG00000007393	prpf38a	82	71.084	ENSSHAG00000006029	-	74	75.336	Sarcophilus_harrisii
ENSXCOG00000007393	prpf38a	63	81.675	ENSSHAG00000006906	-	66	82.320	Sarcophilus_harrisii
ENSXCOG00000007393	prpf38a	100	83.280	ENSSFOG00015013572	prpf38a	72	87.054	Scleropages_formosus
ENSXCOG00000007393	prpf38a	75	92.920	ENSSMAG00000015379	prpf38a	73	92.920	Scophthalmus_maximus
ENSXCOG00000007393	prpf38a	75	94.248	ENSSDUG00000001324	prpf38a	72	94.248	Seriola_dumerili
ENSXCOG00000007393	prpf38a	75	94.248	ENSSLDG00000014803	prpf38a	72	94.248	Seriola_lalandi_dorsalis
ENSXCOG00000007393	prpf38a	60	97.674	ENSSARG00000014458	PRPF38A	71	65.471	Sorex_araneus
ENSXCOG00000007393	prpf38a	77	85.408	ENSSPUG00000013259	PRPF38A	71	86.099	Sphenodon_punctatus
ENSXCOG00000007393	prpf38a	74	77.727	ENSSPAG00000010449	prpf38a	68	77.727	Stegastes_partitus
ENSXCOG00000007393	prpf38a	77	87.554	ENSSSCG00000028288	PRPF38A	71	88.341	Sus_scrofa
ENSXCOG00000007393	prpf38a	77	83.262	ENSTGUG00000008995	PRPF38A	71	83.857	Taeniopygia_guttata
ENSXCOG00000007393	prpf38a	75	92.035	ENSTRUG00000003374	prpf38a	69	92.035	Takifugu_rubripes
ENSXCOG00000007393	prpf38a	75	90.351	ENSTNIG00000005533	prpf38a	73	90.351	Tetraodon_nigroviridis
ENSXCOG00000007393	prpf38a	77	87.554	ENSTBEG00000000725	PRPF38A	71	88.341	Tupaia_belangeri
ENSXCOG00000007393	prpf38a	77	87.554	ENSTTRG00000016139	PRPF38A	71	88.341	Tursiops_truncatus
ENSXCOG00000007393	prpf38a	77	87.554	ENSUAMG00000000625	PRPF38A	71	88.341	Ursus_americanus
ENSXCOG00000007393	prpf38a	77	87.554	ENSUMAG00000022674	PRPF38A	71	88.341	Ursus_maritimus
ENSXCOG00000007393	prpf38a	77	87.124	ENSVPAG00000000907	PRPF38A	71	87.892	Vicugna_pacos
ENSXCOG00000007393	prpf38a	77	87.554	ENSVVUG00000004475	PRPF38A	71	88.341	Vulpes_vulpes
ENSXCOG00000007393	prpf38a	74	86.099	ENSXETG00000008060	prpf38a	71	86.099	Xenopus_tropicalis
ENSXCOG00000007393	prpf38a	100	95.498	ENSXMAG00000026143	prpf38a	100	95.498	Xiphophorus_maculatus