EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: ENSXCOG00000007917 (Gene tree)
Gene ID: -
Gene Symbol: xrn1
Alias: wu:fk92c07|zgc:63635
Full Name: 5'-3' exoribonuclease 1
Gene Type: protein_coding
Species: Xiphophorus_couchianus
Status: putative
Strand: Minus strand
Length: 21291 bases
Position: chrKQ557221.1:7960685-7981975
Accession: ZDB-GENE-040426-1203
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSXCOP00000010453	XRN_N	PF03159.18	1.5e-96	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSXCOT00000010576	-	4902	-	ENSXCOP00000010453	1633 (aa)	-	-

Gene Model

Click here to download ENSXCOG00000007917's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSXCOG00000007917's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSXCOG00000007917	xrn1	100	60.897	ENSG00000114127	XRN1	96	95.146	Homo_sapiens
ENSXCOG00000007917	xrn1	100	80.346	ENSAPOG00000000622	xrn1	100	79.988	Acanthochromis_polyacanthus
ENSXCOG00000007917	xrn1	92	72.358	ENSAMEG00000012538	XRN1	94	72.358	Ailuropoda_melanoleuca
ENSXCOG00000007917	xrn1	100	79.821	ENSACIG00000001057	xrn1	99	79.522	Amphilophus_citrinellus
ENSXCOG00000007917	xrn1	100	77.733	ENSAOCG00000014097	xrn1	100	77.406	Amphiprion_ocellaris
ENSXCOG00000007917	xrn1	100	78.559	ENSAPEG00000006620	xrn1	99	81.806	Amphiprion_percula
ENSXCOG00000007917	xrn1	100	73.653	ENSATEG00000009752	xrn1	100	73.353	Anabas_testudineus
ENSXCOG00000007917	xrn1	98	59.931	ENSAPLG00000004905	XRN1	100	60.275	Anas_platyrhynchos
ENSXCOG00000007917	xrn1	99	71.360	ENSACAG00000004985	XRN1	94	71.521	Anolis_carolinensis
ENSXCOG00000007917	xrn1	100	60.764	ENSANAG00000029013	XRN1	99	73.522	Aotus_nancymaae
ENSXCOG00000007917	xrn1	96	86.721	ENSACLG00000004806	xrn1	94	86.230	Astatotilapia_calliptera
ENSXCOG00000007917	xrn1	100	66.453	ENSAMXG00000019370	xrn1	95	97.087	Astyanax_mexicanus
ENSXCOG00000007917	xrn1	100	60.922	ENSBTAG00000011524	XRN1	100	60.845	Bos_taurus
ENSXCOG00000007917	xrn1	72	36.086	WBGene00012730	xrn-1	73	62.735	Caenorhabditis_elegans
ENSXCOG00000007917	xrn1	100	60.842	ENSCJAG00000001872	XRN1	100	61.034	Callithrix_jacchus
ENSXCOG00000007917	xrn1	92	72.861	ENSCAFG00000007783	XRN1	94	73.105	Canis_familiaris
ENSXCOG00000007917	xrn1	92	72.861	ENSCAFG00020009120	XRN1	99	76.424	Canis_lupus_dingo
ENSXCOG00000007917	xrn1	97	72.372	ENSCHIG00000019192	XRN1	94	72.372	Capra_hircus
ENSXCOG00000007917	xrn1	100	60.671	ENSTSYG00000002705	XRN1	100	60.902	Carlito_syrichta
ENSXCOG00000007917	xrn1	50	86.047	ENSCAPG00000004604	-	94	86.047	Cavia_aperea
ENSXCOG00000007917	xrn1	100	60.622	ENSCCAG00000034800	XRN1	99	77.583	Cebus_capucinus
ENSXCOG00000007917	xrn1	95	62.902	ENSCATG00000041794	XRN1	100	61.415	Cercocebus_atys
ENSXCOG00000007917	xrn1	96	72.779	ENSCLAG00000001451	XRN1	99	77.901	Chinchilla_lanigera
ENSXCOG00000007917	xrn1	95	62.530	ENSCSAG00000011265	XRN1	100	60.845	Chlorocebus_sabaeus
ENSXCOG00000007917	xrn1	55	94.805	ENSCHOG00000013961	-	52	94.805	Choloepus_hoffmanni
ENSXCOG00000007917	xrn1	69	51.127	ENSCSAVG00000008584	-	91	51.127	Ciona_savignyi
ENSXCOG00000007917	xrn1	95	62.979	ENSCANG00000037495	XRN1	99	77.583	Colobus_angolensis_palliatus
ENSXCOG00000007917	xrn1	98	71.313	ENSCGRG00001019411	Xrn1	99	77.266	Cricetulus_griseus_chok1gshd
ENSXCOG00000007917	xrn1	98	71.313	ENSCGRG00000012464	Xrn1	99	77.266	Cricetulus_griseus_crigri
ENSXCOG00000007917	xrn1	96	79.327	ENSCSEG00000021285	xrn1	94	98.077	Cynoglossus_semilaevis
ENSXCOG00000007917	xrn1	68	91.780	ENSCVAG00000013089	xrn1	99	91.780	Cyprinodon_variegatus
ENSXCOG00000007917	xrn1	100	67.718	ENSDARG00000091652	xrn1	98	81.184	Danio_rerio
ENSXCOG00000007917	xrn1	100	60.481	ENSDORG00000013833	Xrn1	100	60.377	Dipodomys_ordii
ENSXCOG00000007917	xrn1	70	42.105	FBgn0020261	pcm	71	42.275	Drosophila_melanogaster
ENSXCOG00000007917	xrn1	85	67.568	ENSETEG00000003978	XRN1	88	68.548	Echinops_telfairi
ENSXCOG00000007917	xrn1	95	62.349	ENSEASG00005002687	XRN1	99	77.424	Equus_asinus_asinus
ENSXCOG00000007917	xrn1	95	62.719	ENSECAG00000008301	XRN1	100	61.191	Equus_caballus
ENSXCOG00000007917	xrn1	86	71.623	ENSEEUG00000011323	XRN1	87	71.623	Erinaceus_europaeus
ENSXCOG00000007917	xrn1	100	68.711	ENSELUG00000000169	xrn1	100	68.639	Esox_lucius
ENSXCOG00000007917	xrn1	95	58.845	ENSFCAG00000027589	XRN1	99	78.901	Felis_catus
ENSXCOG00000007917	xrn1	97	72.058	ENSFALG00000007021	XRN1	92	72.058	Ficedula_albicollis
ENSXCOG00000007917	xrn1	100	59.864	ENSFDAG00000020494	XRN1	99	77.742	Fukomys_damarensis
ENSXCOG00000007917	xrn1	90	75.563	ENSGMOG00000006396	xrn1	87	75.897	Gadus_morhua
ENSXCOG00000007917	xrn1	98	71.975	ENSGALG00000002706	XRN1	92	71.736	Gallus_gallus
ENSXCOG00000007917	xrn1	100	74.425	ENSGACG00000014328	xrn1	100	74.368	Gasterosteus_aculeatus
ENSXCOG00000007917	xrn1	90	71.807	ENSGAGG00000017535	XRN1	90	71.647	Gopherus_agassizii
ENSXCOG00000007917	xrn1	100	60.955	ENSGGOG00000008047	XRN1	100	61.411	Gorilla_gorilla
ENSXCOG00000007917	xrn1	100	77.692	ENSHBUG00000005908	xrn1	96	80.842	Haplochromis_burtoni
ENSXCOG00000007917	xrn1	95	72.616	ENSHGLG00000014476	XRN1	99	77.424	Heterocephalus_glaber_female
ENSXCOG00000007917	xrn1	95	72.616	ENSHGLG00100015130	XRN1	99	77.424	Heterocephalus_glaber_male
ENSXCOG00000007917	xrn1	96	82.204	ENSHCOG00000014062	xrn1	99	82.204	Hippocampus_comes
ENSXCOG00000007917	xrn1	100	67.292	ENSIPUG00000015229	xrn1	100	68.019	Ictalurus_punctatus
ENSXCOG00000007917	xrn1	97	72.535	ENSSTOG00000013552	XRN1	99	77.107	Ictidomys_tridecemlineatus
ENSXCOG00000007917	xrn1	95	71.417	ENSJJAG00000010863	Xrn1	99	76.949	Jaculus_jaculus
ENSXCOG00000007917	xrn1	100	74.852	ENSKMAG00000021356	xrn1	95	86.296	Kryptolebias_marmoratus
ENSXCOG00000007917	xrn1	100	75.088	ENSLBEG00000018656	xrn1	97	99.029	Labrus_bergylta
ENSXCOG00000007917	xrn1	96	72.299	ENSLACG00000009020	XRN1	93	71.974	Latimeria_chalumnae
ENSXCOG00000007917	xrn1	96	75.182	ENSLOCG00000007944	xrn1	93	75.161	Lepisosteus_oculatus
ENSXCOG00000007917	xrn1	63	73.226	ENSLAFG00000015426	XRN1	100	73.178	Loxodonta_africana
ENSXCOG00000007917	xrn1	95	62.902	ENSMFAG00000032599	XRN1	100	61.415	Macaca_fascicularis
ENSXCOG00000007917	xrn1	95	62.902	ENSMMUG00000014038	XRN1	100	61.242	Macaca_mulatta
ENSXCOG00000007917	xrn1	95	63.084	ENSMNEG00000034217	XRN1	100	61.185	Macaca_nemestrina
ENSXCOG00000007917	xrn1	100	74.327	ENSMAMG00000013219	xrn1	92	87.152	Mastacembelus_armatus
ENSXCOG00000007917	xrn1	100	76.419	ENSMZEG00005015099	xrn1	99	76.130	Maylandia_zebra
ENSXCOG00000007917	xrn1	99	59.920	ENSMGAG00000006333	XRN1	100	59.829	Meleagris_gallopavo
ENSXCOG00000007917	xrn1	95	62.781	ENSMICG00000048948	XRN1	96	95.146	Microcebus_murinus
ENSXCOG00000007917	xrn1	58	77.266	ENSMOCG00000008665	Xrn1	99	77.583	Microtus_ochrogaster
ENSXCOG00000007917	xrn1	94	73.350	ENSMODG00000021236	XRN1	100	60.023	Monodelphis_domestica
ENSXCOG00000007917	xrn1	100	75.806	ENSMALG00000004098	xrn1	100	75.986	Monopterus_albus
ENSXCOG00000007917	xrn1	96	65.933	MGP_CAROLIEiJ_G0032535	Xrn1	100	90.000	Mus_caroli
ENSXCOG00000007917	xrn1	98	71.649	ENSMUSG00000032410	Xrn1	100	90.000	Mus_musculus
ENSXCOG00000007917	xrn1	100	59.234	MGP_PahariEiJ_G0015404	Xrn1	100	90.000	Mus_pahari
ENSXCOG00000007917	xrn1	97	71.650	MGP_SPRETEiJ_G0033678	Xrn1	100	90.000	Mus_spretus
ENSXCOG00000007917	xrn1	95	63.136	ENSMPUG00000012040	XRN1	100	61.248	Mustela_putorius_furo
ENSXCOG00000007917	xrn1	100	59.705	ENSMLUG00000016885	XRN1	100	59.568	Myotis_lucifugus
ENSXCOG00000007917	xrn1	57	74.363	ENSNGAG00000023964	Xrn1	99	74.045	Nannospalax_galili
ENSXCOG00000007917	xrn1	95	62.477	ENSNLEG00000004726	XRN1	100	60.964	Nomascus_leucogenys
ENSXCOG00000007917	xrn1	67	95.876	ENSMEUG00000014473	-	64	96.117	Notamacropus_eugenii
ENSXCOG00000007917	xrn1	72	70.073	ENSOPRG00000007337	-	70	70.073	Ochotona_princeps
ENSXCOG00000007917	xrn1	96	87.131	ENSONIG00000016673	xrn1	93	86.639	Oreochromis_niloticus
ENSXCOG00000007917	xrn1	88	69.526	ENSOANG00000006735	XRN1	92	69.526	Ornithorhynchus_anatinus
ENSXCOG00000007917	xrn1	97	73.061	ENSOCUG00000001861	XRN1	94	72.653	Oryctolagus_cuniculus
ENSXCOG00000007917	xrn1	96	85.714	ENSORLG00000013005	xrn1	93	85.632	Oryzias_latipes
ENSXCOG00000007917	xrn1	96	85.714	ENSORLG00020005559	xrn1	100	76.488	Oryzias_latipes_hni
ENSXCOG00000007917	xrn1	100	76.291	ENSORLG00015022523	xrn1	100	77.815	Oryzias_latipes_hsok
ENSXCOG00000007917	xrn1	100	77.286	ENSOMEG00000015397	xrn1	99	85.795	Oryzias_melastigma
ENSXCOG00000007917	xrn1	100	59.528	ENSOGAG00000000170	XRN1	100	59.114	Otolemur_garnettii
ENSXCOG00000007917	xrn1	97	72.616	ENSOARG00000006343	XRN1	99	61.561	Ovis_aries
ENSXCOG00000007917	xrn1	100	61.410	ENSPPAG00000010180	XRN1	100	61.476	Pan_paniscus
ENSXCOG00000007917	xrn1	95	62.553	ENSPPRG00000007125	XRN1	100	61.277	Panthera_pardus
ENSXCOG00000007917	xrn1	95	62.553	ENSPTIG00000021081	XRN1	100	61.220	Panthera_tigris_altaica
ENSXCOG00000007917	xrn1	100	61.236	ENSPTRG00000015482	XRN1	100	61.476	Pan_troglodytes
ENSXCOG00000007917	xrn1	100	61.118	ENSPANG00000010638	XRN1	100	61.185	Papio_anubis
ENSXCOG00000007917	xrn1	96	71.971	ENSPSIG00000018050	XRN1	93	71.729	Pelodiscus_sinensis
ENSXCOG00000007917	xrn1	58	87.460	ENSPMGG00000002648	xrn1	99	87.460	Periophthalmus_magnuspinnatus
ENSXCOG00000007917	xrn1	58	76.741	ENSPEMG00000020610	Xrn1	99	77.107	Peromyscus_maniculatus_bairdii
ENSXCOG00000007917	xrn1	66	48.694	ENSPMAG00000002975	xrn1	90	76.724	Petromyzon_marinus
ENSXCOG00000007917	xrn1	94	73.339	ENSPCIG00000028735	XRN1	99	77.707	Phascolarctos_cinereus
ENSXCOG00000007917	xrn1	90	88.688	ENSPFOG00000013932	xrn1	99	88.688	Poecilia_formosa
ENSXCOG00000007917	xrn1	90	88.911	ENSPLAG00000021653	xrn1	99	88.911	Poecilia_latipinna
ENSXCOG00000007917	xrn1	88	89.596	ENSPMEG00000003076	xrn1	95	89.596	Poecilia_mexicana
ENSXCOG00000007917	xrn1	100	88.338	ENSPREG00000021147	xrn1	100	88.338	Poecilia_reticulata
ENSXCOG00000007917	xrn1	100	60.616	ENSPPYG00000014172	XRN1	100	60.684	Pongo_abelii
ENSXCOG00000007917	xrn1	86	60.468	ENSPCAG00000005638	XRN1	96	60.308	Procavia_capensis
ENSXCOG00000007917	xrn1	95	62.940	ENSPCOG00000013089	XRN1	99	77.742	Propithecus_coquereli
ENSXCOG00000007917	xrn1	86	69.957	ENSPVAG00000016265	XRN1	86	85.549	Pteropus_vampyrus
ENSXCOG00000007917	xrn1	100	78.478	ENSPNYG00000010570	xrn1	99	78.478	Pundamilia_nyererei
ENSXCOG00000007917	xrn1	100	66.064	ENSPNAG00000023531	xrn1	100	66.199	Pygocentrus_nattereri
ENSXCOG00000007917	xrn1	100	59.989	ENSRNOG00000042951	Xrn1	100	59.683	Rattus_norvegicus
ENSXCOG00000007917	xrn1	95	62.138	ENSRBIG00000041227	XRN1	100	60.610	Rhinopithecus_bieti
ENSXCOG00000007917	xrn1	71	52.717	YGL173C	XRN1	73	52.717	Saccharomyces_cerevisiae
ENSXCOG00000007917	xrn1	100	60.727	ENSSBOG00000029561	XRN1	100	60.815	Saimiri_boliviensis_boliviensis
ENSXCOG00000007917	xrn1	94	71.808	ENSSHAG00000016207	XRN1	92	71.642	Sarcophilus_harrisii
ENSXCOG00000007917	xrn1	100	67.738	ENSSFOG00015024211	xrn1	100	67.738	Scleropages_formosus
ENSXCOG00000007917	xrn1	96	85.258	ENSSMAG00000016534	xrn1	96	85.094	Scophthalmus_maximus
ENSXCOG00000007917	xrn1	94	85.322	ENSSDUG00000010306	xrn1	100	84.851	Seriola_dumerili
ENSXCOG00000007917	xrn1	100	78.015	ENSSLDG00000021543	xrn1	100	77.582	Seriola_lalandi_dorsalis
ENSXCOG00000007917	xrn1	62	67.252	ENSSARG00000007741	-	75	67.459	Sorex_araneus
ENSXCOG00000007917	xrn1	100	67.273	ENSTGUG00000008498	XRN1	93	72.565	Taeniopygia_guttata
ENSXCOG00000007917	xrn1	100	72.007	ENSTRUG00000004895	xrn1	97	87.229	Takifugu_rubripes
ENSXCOG00000007917	xrn1	95	80.279	ENSTNIG00000017615	xrn1	92	80.753	Tetraodon_nigroviridis
ENSXCOG00000007917	xrn1	81	85.215	ENSTBEG00000003256	XRN1	84	84.777	Tupaia_belangeri
ENSXCOG00000007917	xrn1	100	57.265	ENSTTRG00000012914	XRN1	100	57.421	Tursiops_truncatus
ENSXCOG00000007917	xrn1	92	70.905	ENSUAMG00000001608	XRN1	99	74.881	Ursus_americanus
ENSXCOG00000007917	xrn1	92	72.698	ENSUMAG00000013625	XRN1	94	72.698	Ursus_maritimus
ENSXCOG00000007917	xrn1	100	59.344	ENSVPAG00000004690	XRN1	100	59.393	Vicugna_pacos
ENSXCOG00000007917	xrn1	91	73.024	ENSVVUG00000024461	XRN1	99	79.185	Vulpes_vulpes
ENSXCOG00000007917	xrn1	100	59.713	ENSXETG00000000619	xrn1	100	84.675	Xenopus_tropicalis
ENSXCOG00000007917	xrn1	99	97.269	ENSXMAG00000018320	xrn1	100	97.269	Xiphophorus_maculatus