EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSXCOG00000007974 (Gene tree)
Gene ID: -
Gene Symbol: trnau1apb
Alias: secp43|trnau1ap|trnau1apl|trspap1|wu:fa56b07|wu:fc12c07|wu:fc69f09|zgc:113964|zgc:77884
Full Name: tRNA selenocysteine 1 associated protein 1b
Gene Type: protein_coding
Species: Xiphophorus_couchianus
Status: putative
Strand: Minus strand
Length: 4613 bases
Position: chrKQ557221.1:8994293-8998905
Accession: ZDB-GENE-040426-2386
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSXCOP00000010541	RRM_1	PF00076.22	3.3e-29	1	2
ENSXCOP00000010541	RRM_1	PF00076.22	3.3e-29	2	2

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSXCOT00000010665	-	888	-	ENSXCOP00000010541	295 (aa)	-	-

Gene Model

Click here to download ENSXCOG00000007974's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSXCOG00000007974's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSXCOG00000007974	trnau1apb	52	37.333	ENSXCOG00000013190	pabpc4	83	37.333
ENSXCOG00000007974	trnau1apb	79	30.201	ENSXCOG00000019901	pabpc1b	55	31.008

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSXCOG00000007974	trnau1apb	94	82.332	ENSAPOG00000010086	trnau1apb	94	84.507	Acanthochromis_polyacanthus
ENSXCOG00000007974	trnau1apb	94	71.207	ENSACIG00000001863	trnau1apb	94	70.062	Amphilophus_citrinellus
ENSXCOG00000007974	trnau1apb	94	75.841	ENSAOCG00000011891	trnau1apb	94	74.164	Amphiprion_ocellaris
ENSXCOG00000007974	trnau1apb	94	72.603	ENSAPEG00000008029	trnau1apb	93	79.795	Amphiprion_percula
ENSXCOG00000007974	trnau1apb	94	75.229	ENSATEG00000002196	trnau1apb	94	73.860	Anabas_testudineus
ENSXCOG00000007974	trnau1apb	94	70.213	ENSACLG00000003016	trnau1apb	94	69.301	Astatotilapia_calliptera
ENSXCOG00000007974	trnau1apb	93	64.516	ENSAMXG00000001805	trnau1apb	93	61.639	Astyanax_mexicanus
ENSXCOG00000007974	trnau1apb	92	71.875	ENSCSEG00000018215	trnau1apb	94	71.875	Cynoglossus_semilaevis
ENSXCOG00000007974	trnau1apb	94	77.950	ENSCVAG00000017866	trnau1apb	99	77.950	Cyprinodon_variegatus
ENSXCOG00000007974	trnau1apb	93	57.143	ENSDARG00000056475	trnau1apb	92	57.143	Danio_rerio
ENSXCOG00000007974	trnau1apb	60	68.780	ENSELUG00000016683	trnau1apb	94	57.516	Esox_lucius
ENSXCOG00000007974	trnau1apb	94	79.630	ENSFHEG00000001267	trnau1apb	99	79.630	Fundulus_heteroclitus
ENSXCOG00000007974	trnau1apb	94	63.580	ENSGMOG00000001160	trnau1apb	94	63.580	Gadus_morhua
ENSXCOG00000007974	trnau1apb	54	99.367	ENSGAFG00000006770	trnau1apb	94	87.205	Gambusia_affinis
ENSXCOG00000007974	trnau1apb	94	66.564	ENSGACG00000014944	trnau1apb	94	69.231	Gasterosteus_aculeatus
ENSXCOG00000007974	trnau1apb	67	37.668	ENSGAGG00000022384	-	78	37.273	Gopherus_agassizii
ENSXCOG00000007974	trnau1apb	94	75.460	ENSHBUG00000018944	trnau1apb	94	73.780	Haplochromis_burtoni
ENSXCOG00000007974	trnau1apb	60	74.641	ENSHCOG00000011350	trnau1apb	72	73.128	Hippocampus_comes
ENSXCOG00000007974	trnau1apb	93	59.603	ENSIPUG00000008843	tsp1l	94	58.472	Ictalurus_punctatus
ENSXCOG00000007974	trnau1apb	66	82.741	ENSKMAG00000010082	trnau1apb	94	76.923	Kryptolebias_marmoratus
ENSXCOG00000007974	trnau1apb	94	66.770	ENSLBEG00000020480	trnau1apb	94	67.925	Labrus_bergylta
ENSXCOG00000007974	trnau1apb	94	51.163	ENSLOCG00000013175	trnau1apb	93	48.829	Lepisosteus_oculatus
ENSXCOG00000007974	trnau1apb	94	75.153	ENSMAMG00000012192	trnau1apb	94	75.153	Mastacembelus_armatus
ENSXCOG00000007974	trnau1apb	94	75.460	ENSMZEG00005014852	trnau1apb	94	73.780	Maylandia_zebra
ENSXCOG00000007974	trnau1apb	67	40.099	ENSMGAG00000003234	-	98	38.942	Meleagris_gallopavo
ENSXCOG00000007974	trnau1apb	91	65.749	ENSMMOG00000021521	trnau1apb	94	65.749	Mola_mola
ENSXCOG00000007974	trnau1apb	94	78.169	ENSMALG00000003772	trnau1apb	94	77.972	Monopterus_albus
ENSXCOG00000007974	trnau1apb	91	69.592	ENSNBRG00000000751	trnau1apb	93	68.652	Neolamprologus_brichardi
ENSXCOG00000007974	trnau1apb	94	74.552	ENSONIG00000016639	trnau1apb	95	66.559	Oreochromis_niloticus
ENSXCOG00000007974	trnau1apb	54	92.500	ENSORLG00000013265	trnau1apb	94	67.077	Oryzias_latipes
ENSXCOG00000007974	trnau1apb	94	67.492	ENSORLG00020004464	trnau1apb	99	67.492	Oryzias_latipes_hni
ENSXCOG00000007974	trnau1apb	94	67.183	ENSORLG00015021098	trnau1apb	94	67.183	Oryzias_latipes_hsok
ENSXCOG00000007974	trnau1apb	54	92.500	ENSOMEG00000016531	trnau1apb	94	75.535	Oryzias_melastigma
ENSXCOG00000007974	trnau1apb	94	53.016	ENSPKIG00000007995	trnau1apb	94	60.071	Paramormyrops_kingsleyae
ENSXCOG00000007974	trnau1apb	67	40.566	ENSPSIG00000004189	-	78	39.091	Pelodiscus_sinensis
ENSXCOG00000007974	trnau1apb	94	63.390	ENSPMGG00000018509	trnau1apb	93	66.429	Periophthalmus_magnuspinnatus
ENSXCOG00000007974	trnau1apb	94	84.877	ENSPFOG00000003938	trnau1apb	94	84.877	Poecilia_formosa
ENSXCOG00000007974	trnau1apb	94	84.877	ENSPLAG00000015480	trnau1apb	94	84.877	Poecilia_latipinna
ENSXCOG00000007974	trnau1apb	94	84.877	ENSPMEG00000012743	trnau1apb	94	84.877	Poecilia_mexicana
ENSXCOG00000007974	trnau1apb	94	83.642	ENSPREG00000015035	trnau1apb	94	83.642	Poecilia_reticulata
ENSXCOG00000007974	trnau1apb	94	70.213	ENSPNYG00000012127	trnau1apb	94	69.301	Pundamilia_nyererei
ENSXCOG00000007974	trnau1apb	93	59.736	ENSPNAG00000019138	trnau1apb	92	61.356	Pygocentrus_nattereri
ENSXCOG00000007974	trnau1apb	93	57.235	ENSSFOG00015014158	trnau1apb	93	56.386	Scleropages_formosus
ENSXCOG00000007974	trnau1apb	94	71.385	ENSSMAG00000001745	trnau1apb	94	67.398	Scophthalmus_maximus
ENSXCOG00000007974	trnau1apb	94	74.847	ENSSDUG00000011109	trnau1apb	94	73.780	Seriola_dumerili
ENSXCOG00000007974	trnau1apb	94	74.847	ENSSLDG00000012947	trnau1apb	94	73.476	Seriola_lalandi_dorsalis
ENSXCOG00000007974	trnau1apb	67	34.538	ENSSPUG00000016701	-	82	33.198	Sphenodon_punctatus
ENSXCOG00000007974	trnau1apb	94	81.379	ENSSPAG00000006917	trnau1apb	94	74.772	Stegastes_partitus
ENSXCOG00000007974	trnau1apb	94	68.562	ENSTRUG00000008608	trnau1apb	93	70.990	Takifugu_rubripes
ENSXCOG00000007974	trnau1apb	94	70.383	ENSTNIG00000000916	trnau1apb	95	68.214	Tetraodon_nigroviridis
ENSXCOG00000007974	trnau1apb	94	85.494	ENSXMAG00000029918	trnau1apb	94	85.494	Xiphophorus_maculatus