EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSXCOG00000007996 (Gene tree)
Gene ID: -
Gene Symbol: -
Alias: -
Full Name: -
Gene Type: protein_coding
Species: Xiphophorus_couchianus
Status: putative
Strand: Plus strand
Length: 7231 bases
Position: chrKQ557225.1:4986026-4993256
Accession: -
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSXCOP00000010575	RNase_Zc3h12a	PF11977.8	9.9e-65	1	1
ENSXCOP00000010576	RNase_Zc3h12a	PF11977.8	1.6e-64	1	1
ENSXCOP00000010572	RNase_Zc3h12a	PF11977.8	1.6e-57	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSXCOT00000010699	-	1923	-	ENSXCOP00000010575	640 (aa)	-	-
ENSXCOT00000010700	-	2436	-	ENSXCOP00000010576	811 (aa)	-	-
ENSXCOT00000010696	-	819	-	ENSXCOP00000010572	272 (aa)	-	-

Gene Model

Click here to download ENSXCOG00000007996's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSXCOG00000007996's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSXCOG00000007996	-	83	58.590	ENSXCOG00000001538	-	94	51.678
ENSXCOG00000007996	-	83	60.000	ENSXCOG00000008984	zc3h12a	89	50.694
ENSXCOG00000007996	-	83	71.121	ENSXCOG00000006151	zc3h12b	58	75.503

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSXCOG00000007996	-	86	68.465	ENSG00000102053	ZC3H12B	51	75.748	Homo_sapiens
ENSXCOG00000007996	-	83	71.674	ENSAPOG00000001738	zc3h12b	57	76.510	Acanthochromis_polyacanthus
ENSXCOG00000007996	-	87	86.420	ENSACIG00000005689	-	77	86.420	Amphilophus_citrinellus
ENSXCOG00000007996	-	83	72.687	ENSACIG00000009787	zc3h12b	58	75.585	Amphilophus_citrinellus
ENSXCOG00000007996	-	83	73.128	ENSAOCG00000010094	zc3h12b	57	75.839	Amphiprion_ocellaris
ENSXCOG00000007996	-	83	71.795	ENSAPEG00000007479	zc3h12b	57	76.510	Amphiprion_percula
ENSXCOG00000007996	-	83	71.366	ENSAPLG00000003874	ZC3H12B	99	75.517	Anas_platyrhynchos
ENSXCOG00000007996	-	86	68.050	ENSANAG00000010296	ZC3H12B	51	75.415	Aotus_nancymaae
ENSXCOG00000007996	-	83	72.247	ENSACLG00000007669	zc3h12b	57	75.251	Astatotilapia_calliptera
ENSXCOG00000007996	-	89	68.595	ENSAMXG00000005320	-	98	45.923	Astyanax_mexicanus
ENSXCOG00000007996	-	89	65.370	ENSAMXG00000011328	zc3h12b	50	74.098	Astyanax_mexicanus
ENSXCOG00000007996	-	89	65.289	ENSAMXG00000038308	-	98	44.988	Astyanax_mexicanus
ENSXCOG00000007996	-	86	68.465	ENSBTAG00000002206	ZC3H12B	51	76.080	Bos_taurus
ENSXCOG00000007996	-	86	68.465	ENSCJAG00000001427	ZC3H12B	51	75.748	Callithrix_jacchus
ENSXCOG00000007996	-	86	67.635	ENSCAFG00000031307	ZC3H12B	59	65.067	Canis_familiaris
ENSXCOG00000007996	-	86	67.635	ENSCAFG00020017995	ZC3H12B	59	65.067	Canis_lupus_dingo
ENSXCOG00000007996	-	86	70.339	ENSTSYG00000011302	ZC3H12B	60	64.136	Carlito_syrichta
ENSXCOG00000007996	-	86	68.050	ENSCCAG00000030171	ZC3H12B	56	75.415	Cebus_capucinus
ENSXCOG00000007996	-	86	68.465	ENSCATG00000044845	ZC3H12B	51	75.748	Cercocebus_atys
ENSXCOG00000007996	-	86	68.050	ENSCLAG00000003600	ZC3H12B	51	73.754	Chinchilla_lanigera
ENSXCOG00000007996	-	86	70.763	ENSCSAG00000011955	-	68	73.451	Chlorocebus_sabaeus
ENSXCOG00000007996	-	83	68.619	ENSCPBG00000006983	ZC3H12B	67	62.992	Chrysemys_picta_bellii
ENSXCOG00000007996	-	86	68.465	ENSCANG00000006746	ZC3H12B	51	75.748	Colobus_angolensis_palliatus
ENSXCOG00000007996	-	86	69.231	ENSCGRG00001018643	Zc3h12b	51	75.585	Cricetulus_griseus_chok1gshd
ENSXCOG00000007996	-	86	69.231	ENSCGRG00000015623	Zc3h12b	51	75.585	Cricetulus_griseus_crigri
ENSXCOG00000007996	-	83	70.690	ENSCSEG00000013686	zc3h12b	58	74.832	Cynoglossus_semilaevis
ENSXCOG00000007996	-	83	71.429	ENSCVAG00000010473	zc3h12b	61	70.000	Cyprinodon_variegatus
ENSXCOG00000007996	-	86	68.644	ENSDNOG00000038439	ZC3H12B	62	70.769	Dasypus_novemcinctus
ENSXCOG00000007996	-	86	69.915	ENSDORG00000024832	Zc3h12b	53	72.500	Dipodomys_ordii
ENSXCOG00000007996	-	85	58.798	ENSEASG00005006995	ZC3H12B	66	57.027	Equus_asinus_asinus
ENSXCOG00000007996	-	86	70.339	ENSECAG00000020993	ZC3H12B	89	57.051	Equus_caballus
ENSXCOG00000007996	-	86	70.464	ENSFCAG00000032299	ZC3H12B	58	75.415	Felis_catus
ENSXCOG00000007996	-	83	70.925	ENSFALG00000004293	ZC3H12B	82	66.172	Ficedula_albicollis
ENSXCOG00000007996	-	85	67.500	ENSFDAG00000014258	ZC3H12B	51	73.667	Fukomys_damarensis
ENSXCOG00000007996	-	89	90.871	ENSFHEG00000014717	-	95	88.119	Fundulus_heteroclitus
ENSXCOG00000007996	-	83	72.247	ENSFHEG00000002391	zc3h12b	56	74.419	Fundulus_heteroclitus
ENSXCOG00000007996	-	83	71.366	ENSGALG00000039391	ZC3H12B	59	71.609	Gallus_gallus
ENSXCOG00000007996	-	98	91.887	ENSGAFG00000004701	-	99	86.199	Gambusia_affinis
ENSXCOG00000007996	-	87	69.672	ENSGAFG00000006871	zc3h12b	58	74.194	Gambusia_affinis
ENSXCOG00000007996	-	53	88.889	ENSGACG00000020334	zc3h12b	52	86.364	Gasterosteus_aculeatus
ENSXCOG00000007996	-	83	68.201	ENSGAGG00000005569	ZC3H12B	67	63.255	Gopherus_agassizii
ENSXCOG00000007996	-	86	68.465	ENSGGOG00000024638	ZC3H12B	51	75.415	Gorilla_gorilla
ENSXCOG00000007996	-	83	71.368	ENSHBUG00000000645	zc3h12b	57	75.251	Haplochromis_burtoni
ENSXCOG00000007996	-	84	86.900	ENSHBUG00000003376	-	91	80.667	Haplochromis_burtoni
ENSXCOG00000007996	-	85	67.500	ENSHGLG00000003107	ZC3H12B	51	73.333	Heterocephalus_glaber_female
ENSXCOG00000007996	-	85	67.500	ENSHGLG00100010721	ZC3H12B	51	73.333	Heterocephalus_glaber_male
ENSXCOG00000007996	-	83	70.940	ENSHCOG00000008487	zc3h12b	58	74.832	Hippocampus_comes
ENSXCOG00000007996	-	86	76.496	ENSHCOG00000017425	-	96	61.923	Hippocampus_comes
ENSXCOG00000007996	-	83	80.176	ENSIPUG00000014830	-	98	47.239	Ictalurus_punctatus
ENSXCOG00000007996	-	83	68.936	ENSSTOG00000020962	ZC3H12B	51	74.751	Ictidomys_tridecemlineatus
ENSXCOG00000007996	-	83	71.304	ENSKMAG00000004921	zc3h12b	57	74.832	Kryptolebias_marmoratus
ENSXCOG00000007996	-	83	70.940	ENSLBEG00000006448	zc3h12b	57	75.168	Labrus_bergylta
ENSXCOG00000007996	-	83	71.121	ENSLACG00000014526	ZC3H12B	68	62.148	Latimeria_chalumnae
ENSXCOG00000007996	-	88	67.782	ENSLOCG00000014631	zc3h12b	77	43.137	Lepisosteus_oculatus
ENSXCOG00000007996	-	86	79.832	ENSLOCG00000010717	-	80	53.756	Lepisosteus_oculatus
ENSXCOG00000007996	-	86	67.220	ENSLAFG00000014891	ZC3H12B	58	74.086	Loxodonta_africana
ENSXCOG00000007996	-	86	70.085	ENSMFAG00000042237	ZC3H12B	51	75.748	Macaca_fascicularis
ENSXCOG00000007996	-	86	68.465	ENSMMUG00000012261	ZC3H12B	51	75.748	Macaca_mulatta
ENSXCOG00000007996	-	86	68.465	ENSMNEG00000043003	ZC3H12B	51	75.748	Macaca_nemestrina
ENSXCOG00000007996	-	86	68.465	ENSMLEG00000042630	ZC3H12B	51	75.748	Mandrillus_leucophaeus
ENSXCOG00000007996	-	83	71.429	ENSMAMG00000011770	zc3h12b	57	75.168	Mastacembelus_armatus
ENSXCOG00000007996	-	83	72.247	ENSMZEG00005007548	zc3h12b	57	75.251	Maylandia_zebra
ENSXCOG00000007996	-	83	70.925	ENSMGAG00000000759	ZC3H12B	65	63.947	Meleagris_gallopavo
ENSXCOG00000007996	-	86	69.658	ENSMAUG00000017800	Zc3h12b	51	75.920	Mesocricetus_auratus
ENSXCOG00000007996	-	86	68.880	ENSMICG00000010697	ZC3H12B	51	75.083	Microcebus_murinus
ENSXCOG00000007996	-	86	69.658	ENSMOCG00000000094	Zc3h12b	51	75.920	Microtus_ochrogaster
ENSXCOG00000007996	-	85	70.213	ENSMMOG00000008734	zc3h12b	58	75.000	Mola_mola
ENSXCOG00000007996	-	84	71.739	ENSMODG00000005206	ZC3H12B	77	55.983	Monodelphis_domestica
ENSXCOG00000007996	-	75	69.231	ENSMALG00000021153	zc3h12b	60	59.016	Monopterus_albus
ENSXCOG00000007996	-	85	84.416	ENSMALG00000016807	-	81	78.261	Monopterus_albus
ENSXCOG00000007996	-	86	69.231	ENSMUSG00000035045	Zc3h12b	66	91.429	Mus_musculus
ENSXCOG00000007996	-	86	68.803	MGP_PahariEiJ_G0031787	Zc3h12b	51	75.251	Mus_pahari
ENSXCOG00000007996	-	86	69.231	MGP_SPRETEiJ_G0034413	Zc3h12b	51	75.585	Mus_spretus
ENSXCOG00000007996	-	86	67.220	ENSMPUG00000001162	ZC3H12B	57	74.419	Mustela_putorius_furo
ENSXCOG00000007996	-	86	71.186	ENSMLUG00000013635	ZC3H12B	60	75.828	Myotis_lucifugus
ENSXCOG00000007996	-	83	72.247	ENSNBRG00000014889	zc3h12b	57	75.251	Neolamprologus_brichardi
ENSXCOG00000007996	-	86	68.465	ENSNLEG00000000383	ZC3H12B	51	75.748	Nomascus_leucogenys
ENSXCOG00000007996	-	65	73.118	ENSMEUG00000014075	ZC3H12B	64	67.208	Notamacropus_eugenii
ENSXCOG00000007996	-	83	72.368	ENSONIG00000012867	zc3h12b	58	74.257	Oreochromis_niloticus
ENSXCOG00000007996	-	86	68.050	ENSOCUG00000006130	ZC3H12B	51	75.415	Oryctolagus_cuniculus
ENSXCOG00000007996	-	89	81.301	ENSORLG00000009188	-	95	79.279	Oryzias_latipes
ENSXCOG00000007996	-	83	70.513	ENSORLG00000009556	zc3h12b	57	75.168	Oryzias_latipes
ENSXCOG00000007996	-	86	82.845	ENSORLG00020019033	-	95	79.279	Oryzias_latipes_hni
ENSXCOG00000007996	-	83	70.513	ENSORLG00020021793	zc3h12b	57	75.168	Oryzias_latipes_hni
ENSXCOG00000007996	-	86	82.008	ENSORLG00015020619	-	99	76.515	Oryzias_latipes_hsok
ENSXCOG00000007996	-	83	70.940	ENSORLG00015004818	zc3h12b	57	75.503	Oryzias_latipes_hsok
ENSXCOG00000007996	-	86	82.979	ENSOMEG00000018642	-	97	57.880	Oryzias_melastigma
ENSXCOG00000007996	-	83	70.940	ENSOMEG00000005768	zc3h12b	57	75.503	Oryzias_melastigma
ENSXCOG00000007996	-	86	68.465	ENSOGAG00000029439	ZC3H12B	59	66.756	Otolemur_garnettii
ENSXCOG00000007996	-	86	68.050	ENSOARG00000004959	ZC3H12B	51	75.415	Ovis_aries
ENSXCOG00000007996	-	86	68.465	ENSPPAG00000039530	ZC3H12B	51	75.748	Pan_paniscus
ENSXCOG00000007996	-	86	68.465	ENSPTRG00000021969	ZC3H12B	51	75.748	Pan_troglodytes
ENSXCOG00000007996	-	86	68.465	ENSPANG00000007944	ZC3H12B	51	75.748	Papio_anubis
ENSXCOG00000007996	-	86	77.119	ENSPKIG00000012595	-	93	45.771	Paramormyrops_kingsleyae
ENSXCOG00000007996	-	84	70.742	ENSPKIG00000012946	zc3h12b	58	74.333	Paramormyrops_kingsleyae
ENSXCOG00000007996	-	83	68.487	ENSPSIG00000016853	ZC3H12B	63	66.382	Pelodiscus_sinensis
ENSXCOG00000007996	-	83	71.304	ENSPMGG00000006009	zc3h12b	58	73.754	Periophthalmus_magnuspinnatus
ENSXCOG00000007996	-	83	70.175	ENSPCIG00000020264	ZC3H12B	67	62.992	Phascolarctos_cinereus
ENSXCOG00000007996	-	83	71.121	ENSPFOG00000019365	zc3h12b	57	75.503	Poecilia_formosa
ENSXCOG00000007996	-	97	97.358	ENSPLAG00000011687	-	88	97.358	Poecilia_latipinna
ENSXCOG00000007996	-	83	71.552	ENSPLAG00000011981	zc3h12b	54	75.839	Poecilia_latipinna
ENSXCOG00000007996	-	83	60.345	ENSPMEG00000002552	zc3h12b	55	66.779	Poecilia_mexicana
ENSXCOG00000007996	-	83	71.121	ENSPREG00000020794	zc3h12b	56	75.168	Poecilia_reticulata
ENSXCOG00000007996	-	53	87.586	ENSPPYG00000020416	ZC3H12B	53	74.113	Pongo_abelii
ENSXCOG00000007996	-	86	68.465	ENSPCOG00000020467	ZC3H12B	58	75.748	Propithecus_coquereli
ENSXCOG00000007996	-	89	82.979	ENSPNYG00000007151	-	90	80.263	Pundamilia_nyererei
ENSXCOG00000007996	-	83	77.093	ENSPNYG00000015874	-	78	83.254	Pundamilia_nyererei
ENSXCOG00000007996	-	83	72.247	ENSPNYG00000018012	zc3h12b	57	75.251	Pundamilia_nyererei
ENSXCOG00000007996	-	89	77.778	ENSPNAG00000017483	-	98	47.775	Pygocentrus_nattereri
ENSXCOG00000007996	-	84	69.295	ENSPNAG00000002567	zc3h12b	58	75.667	Pygocentrus_nattereri
ENSXCOG00000007996	-	86	69.658	ENSRNOG00000011508	Zc3h12b	69	72.566	Rattus_norvegicus
ENSXCOG00000007996	-	86	68.465	ENSRBIG00000036402	ZC3H12B	51	75.748	Rhinopithecus_bieti
ENSXCOG00000007996	-	86	68.465	ENSRROG00000036004	ZC3H12B	51	75.748	Rhinopithecus_roxellana
ENSXCOG00000007996	-	86	68.050	ENSSBOG00000004095	ZC3H12B	51	75.415	Saimiri_boliviensis_boliviensis
ENSXCOG00000007996	-	83	70.690	ENSSMAG00000018309	zc3h12b	57	75.251	Scophthalmus_maximus
ENSXCOG00000007996	-	83	70.996	ENSSDUG00000014078	zc3h12b	83	73.094	Seriola_dumerili
ENSXCOG00000007996	-	83	71.368	ENSSLDG00000018895	zc3h12b	57	75.839	Seriola_lalandi_dorsalis
ENSXCOG00000007996	-	83	71.806	ENSSPUG00000014175	ZC3H12B	67	63.636	Sphenodon_punctatus
ENSXCOG00000007996	-	83	71.368	ENSSPAG00000022460	zc3h12b	57	76.174	Stegastes_partitus
ENSXCOG00000007996	-	86	70.085	ENSSSCG00000012367	ZC3H12B	51	75.748	Sus_scrofa
ENSXCOG00000007996	-	83	71.366	ENSTGUG00000002846	ZC3H12B	53	60.465	Taeniopygia_guttata
ENSXCOG00000007996	-	86	83.333	ENSTRUG00000015402	-	94	77.586	Takifugu_rubripes
ENSXCOG00000007996	-	72	55.592	ENSTNIG00000015684	-	99	55.592	Tetraodon_nigroviridis
ENSXCOG00000007996	-	86	69.658	ENSUAMG00000005098	ZC3H12B	65	64.463	Ursus_americanus
ENSXCOG00000007996	-	86	69.658	ENSUMAG00000017054	ZC3H12B	65	64.463	Ursus_maritimus
ENSXCOG00000007996	-	53	87.586	ENSVPAG00000009070	ZC3H12B	51	71.852	Vicugna_pacos
ENSXCOG00000007996	-	86	67.635	ENSVVUG00000022686	ZC3H12B	58	65.217	Vulpes_vulpes
ENSXCOG00000007996	-	83	71.121	ENSXMAG00000018548	zc3h12b	56	75.503	Xiphophorus_maculatus