EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSXCOG00000008262 (Gene tree)
Gene ID: -
Gene Symbol: cirbpa
Alias: cirbp|wu:fb12c11|wu:fi20g12|zgc:136559
Full Name: cold inducible RNA binding protein a
Gene Type: protein_coding
Species: Xiphophorus_couchianus
Status: putative
Strand: Plus strand
Length: 3039 bases
Position: chrKQ557221.1:11109495-11112533
Accession: ZDB-GENE-050417-329
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSXCOP00000010947	RRM_1	PF00076.22	3.2e-26	1	1
ENSXCOP00000010950	RRM_1	PF00076.22	3.8e-26	1	1
ENSXCOP00000010944	RRM_1	PF00076.22	7.7e-26	1	1
ENSXCOP00000010948	RRM_1	PF00076.22	7.8e-26	1	1
ENSXCOP00000010942	RRM_1	PF00076.22	4.7e-25	1	1
ENSXCOP00000010937	RRM_1	PF00076.22	2.7e-23	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSXCOT00000011062	-	543	-	ENSXCOP00000010937	180 (aa)	-	-
ENSXCOT00000011073	-	558	-	ENSXCOP00000010948	185 (aa)	-	-
ENSXCOT00000011072	-	381	-	ENSXCOP00000010947	126 (aa)	-	-
ENSXCOT00000011067	-	240	-	ENSXCOP00000010942	79 (aa)	-	-
ENSXCOT00000011069	-	555	-	ENSXCOP00000010944	184 (aa)	-	UPI0006D8DF73
ENSXCOT00000011075	-	405	-	ENSXCOP00000010950	134 (aa)	-	-

Gene Model

Click here to download ENSXCOG00000008262's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSXCOG00000008262's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSXCOG00000008262	cirbpa	77	36.066	ENSXCOG00000020358	-	82	35.065
ENSXCOG00000008262	cirbpa	78	33.871	ENSXCOG00000008477	sf3b6	54	31.507
ENSXCOG00000008262	cirbpa	90	30.986	ENSXCOG00000014895	zcrb1	54	33.750
ENSXCOG00000008262	cirbpa	78	46.939	ENSXCOG00000003397	hnrnpaba	62	39.189
ENSXCOG00000008262	cirbpa	85	40.323	ENSXCOG00000014236	elavl1a	70	37.500
ENSXCOG00000008262	cirbpa	82	38.710	ENSXCOG00000002464	ELAVL2	62	37.333
ENSXCOG00000008262	cirbpa	86	35.294	ENSXCOG00000003730	-	52	30.435
ENSXCOG00000008262	cirbpa	89	32.857	ENSXCOG00000010843	srsf7b	55	33.721
ENSXCOG00000008262	cirbpa	98	34.646	ENSXCOG00000010968	ncbp2	62	34.653
ENSXCOG00000008262	cirbpa	99	31.579	ENSXCOG00000009381	srsf7a	69	33.696
ENSXCOG00000008262	cirbpa	90	37.815	ENSXCOG00000018826	srsf4	68	35.354
ENSXCOG00000008262	cirbpa	84	39.130	ENSXCOG00000017639	hnrnpd	55	36.905
ENSXCOG00000008262	cirbpa	71	33.929	ENSXCOG00000020319	-	65	33.333
ENSXCOG00000008262	cirbpa	78	37.097	ENSXCOG00000008068	-	50	36.111
ENSXCOG00000008262	cirbpa	82	33.846	ENSXCOG00000008757	-	54	34.783
ENSXCOG00000008262	cirbpa	91	49.231	ENSXCOG00000009001	-	67	47.368
ENSXCOG00000008262	cirbpa	85	47.170	ENSXCOG00000013190	pabpc4	64	44.444
ENSXCOG00000008262	cirbpa	78	48.980	ENSXCOG00000018775	-	68	40.541
ENSXCOG00000008262	cirbpa	96	40.845	ENSXCOG00000005459	pabpc1l	52	35.135
ENSXCOG00000008262	cirbpa	94	50.769	ENSXCOG00000019224	HNRNPA1P48	74	48.684

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSXCOG00000008262	cirbpa	92	95.890	ENSAPOG00000004458	cirbpa	72	83.582	Acanthochromis_polyacanthus
ENSXCOG00000008262	cirbpa	92	95.890	ENSACIG00000016116	cirbpa	99	85.326	Amphilophus_citrinellus
ENSXCOG00000008262	cirbpa	92	95.890	ENSAOCG00000016212	cirbpa	99	74.737	Amphiprion_ocellaris
ENSXCOG00000008262	cirbpa	92	95.890	ENSAPEG00000011989	cirbpa	99	74.332	Amphiprion_percula
ENSXCOG00000008262	cirbpa	99	84.699	ENSATEG00000014985	cirbpa	99	81.667	Anabas_testudineus
ENSXCOG00000008262	cirbpa	92	95.890	ENSACLG00000002094	-	99	85.635	Astatotilapia_calliptera
ENSXCOG00000008262	cirbpa	92	72.603	ENSAMXG00000015612	cirbpb	84	55.665	Astyanax_mexicanus
ENSXCOG00000008262	cirbpa	92	67.123	ENSAMXG00000002894	cirbpa	92	58.904	Astyanax_mexicanus
ENSXCOG00000008262	cirbpa	92	82.192	ENSCSEG00000014344	cirbpa	99	70.681	Cynoglossus_semilaevis
ENSXCOG00000008262	cirbpa	92	95.890	ENSCVAG00000004853	cirbpa	99	86.264	Cyprinodon_variegatus
ENSXCOG00000008262	cirbpa	92	73.973	ENSDARG00000013351	cirbpb	99	53.476	Danio_rerio
ENSXCOG00000008262	cirbpa	92	67.123	ENSDARG00000103672	cirbpa	98	59.890	Danio_rerio
ENSXCOG00000008262	cirbpa	92	80.822	ENSELUG00000009891	cirbpa	100	68.041	Esox_lucius
ENSXCOG00000008262	cirbpa	92	72.603	ENSELUG00000004675	-	100	47.594	Esox_lucius
ENSXCOG00000008262	cirbpa	92	69.863	ENSELUG00000019588	cirbpb	100	63.366	Esox_lucius
ENSXCOG00000008262	cirbpa	92	97.260	ENSFHEG00000002580	cirbpa	100	80.978	Fundulus_heteroclitus
ENSXCOG00000008262	cirbpa	92	78.082	ENSGMOG00000012137	cirbpa	99	61.538	Gadus_morhua
ENSXCOG00000008262	cirbpa	92	75.342	ENSGMOG00000020447	-	71	63.200	Gadus_morhua
ENSXCOG00000008262	cirbpa	92	63.014	ENSGMOG00000007179	cirbpb	98	52.217	Gadus_morhua
ENSXCOG00000008262	cirbpa	100	98.925	ENSGAFG00000008654	cirbpa	99	98.925	Gambusia_affinis
ENSXCOG00000008262	cirbpa	92	84.932	ENSGACG00000015206	cirbpa	98	70.968	Gasterosteus_aculeatus
ENSXCOG00000008262	cirbpa	92	83.562	ENSGACG00000014978	-	99	63.187	Gasterosteus_aculeatus
ENSXCOG00000008262	cirbpa	92	95.890	ENSHBUG00000022060	cirbpa	99	85.635	Haplochromis_burtoni
ENSXCOG00000008262	cirbpa	92	89.041	ENSHCOG00000001170	cirbpa	79	90.526	Hippocampus_comes
ENSXCOG00000008262	cirbpa	92	73.973	ENSIPUG00000000698	cirbpb	100	58.706	Ictalurus_punctatus
ENSXCOG00000008262	cirbpa	92	86.301	ENSKMAG00000005905	cirbpa	99	74.586	Kryptolebias_marmoratus
ENSXCOG00000008262	cirbpa	92	84.932	ENSLBEG00000027731	-	76	79.787	Labrus_bergylta
ENSXCOG00000008262	cirbpa	92	79.452	ENSLBEG00000000292	cirbpa	99	62.983	Labrus_bergylta
ENSXCOG00000008262	cirbpa	99	82.967	ENSMAMG00000010168	cirbpa	99	83.516	Mastacembelus_armatus
ENSXCOG00000008262	cirbpa	92	95.890	ENSMZEG00005025577	-	99	85.635	Maylandia_zebra
ENSXCOG00000008262	cirbpa	96	84.211	ENSMMOG00000010696	cirbpa	92	84.211	Mola_mola
ENSXCOG00000008262	cirbpa	92	93.151	ENSMALG00000020092	cirbpa	99	88.827	Monopterus_albus
ENSXCOG00000008262	cirbpa	92	95.890	ENSNBRG00000019658	cirbpa	99	85.635	Neolamprologus_brichardi
ENSXCOG00000008262	cirbpa	92	95.890	ENSONIG00000010169	cirbpa	99	85.326	Oreochromis_niloticus
ENSXCOG00000008262	cirbpa	92	97.260	ENSORLG00000015433	cirbpa	99	80.978	Oryzias_latipes
ENSXCOG00000008262	cirbpa	92	97.260	ENSORLG00020016909	cirbpa	99	80.978	Oryzias_latipes_hni
ENSXCOG00000008262	cirbpa	92	97.260	ENSORLG00015016636	cirbpa	99	80.978	Oryzias_latipes_hsok
ENSXCOG00000008262	cirbpa	92	97.260	ENSOMEG00000021469	cirbpa	72	84.444	Oryzias_melastigma
ENSXCOG00000008262	cirbpa	92	72.603	ENSPKIG00000010561	cirbpa	100	66.845	Paramormyrops_kingsleyae
ENSXCOG00000008262	cirbpa	92	91.781	ENSPMGG00000017342	cirbpa	95	73.545	Periophthalmus_magnuspinnatus
ENSXCOG00000008262	cirbpa	98	93.443	ENSPFOG00000015653	cirbpa	100	97.268	Poecilia_formosa
ENSXCOG00000008262	cirbpa	98	93.443	ENSPLAG00000011125	cirbpa	100	97.268	Poecilia_latipinna
ENSXCOG00000008262	cirbpa	98	93.443	ENSPMEG00000013878	cirbpa	100	97.268	Poecilia_mexicana
ENSXCOG00000008262	cirbpa	100	98.913	ENSPREG00000018042	cirbpa	99	98.913	Poecilia_reticulata
ENSXCOG00000008262	cirbpa	92	95.890	ENSPNYG00000007198	-	99	84.783	Pundamilia_nyererei
ENSXCOG00000008262	cirbpa	92	67.123	ENSPNAG00000024569	cirbpa	98	56.842	Pygocentrus_nattereri
ENSXCOG00000008262	cirbpa	92	72.603	ENSPNAG00000019997	cirbpb	99	56.716	Pygocentrus_nattereri
ENSXCOG00000008262	cirbpa	92	72.603	ENSSFOG00015005346	cirbpb	99	66.667	Scleropages_formosus
ENSXCOG00000008262	cirbpa	92	69.863	ENSSFOG00015009951	cirbpa	99	59.474	Scleropages_formosus
ENSXCOG00000008262	cirbpa	92	84.932	ENSSMAG00000002412	cirbpa	99	71.134	Scophthalmus_maximus
ENSXCOG00000008262	cirbpa	90	94.366	ENSSDUG00000016099	cirbpa	99	68.394	Seriola_dumerili
ENSXCOG00000008262	cirbpa	92	93.151	ENSSPAG00000023037	cirbpa	98	68.889	Stegastes_partitus
ENSXCOG00000008262	cirbpa	92	89.041	ENSTRUG00000010187	cirbpa	99	72.067	Takifugu_rubripes
ENSXCOG00000008262	cirbpa	92	91.781	ENSTNIG00000000450	cirbpa	99	76.503	Tetraodon_nigroviridis
ENSXCOG00000008262	cirbpa	99	98.901	ENSXMAG00000019336	cirbpa	99	98.901	Xiphophorus_maculatus