EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSXCOG00000008410 (Gene tree)
Gene ID: -
Gene Symbol: si:dkey-34d22.5
Alias: -
Full Name: si:dkey-34d22.5
Gene Type: protein_coding
Species: Xiphophorus_couchianus
Status: putative
Strand: Minus strand
Length: 3897 bases
Position: chrKQ557221.1:11923718-11927614
Accession: ZDB-GENE-131121-578
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSXCOP00000011126	MMR_HSR1	PF01926.23	9e-05	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSXCOT00000011254	-	669	-	ENSXCOP00000011126	222 (aa)	-	UPI0003B67006

Gene Model

Click here to download ENSXCOG00000008410's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSXCOG00000008410's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSXCOG00000008410	si:dkey-34d22.5	86	60.000	ENSXCOG00000003428	rab42a	86	60.000
ENSXCOG00000008410	si:dkey-34d22.5	97	33.486	ENSXCOG00000004226	rab11al	95	33.486
ENSXCOG00000008410	si:dkey-34d22.5	68	32.450	ENSXCOG00000019281	rheb	81	31.788
ENSXCOG00000008410	si:dkey-34d22.5	72	32.317	ENSXCOG00000010812	dnajc27	59	32.317
ENSXCOG00000008410	si:dkey-34d22.5	66	35.616	ENSXCOG00000007650	rras	79	35.220
ENSXCOG00000008410	si:dkey-34d22.5	72	43.750	ENSXCOG00000010770	-	65	41.916
ENSXCOG00000008410	si:dkey-34d22.5	97	33.032	ENSXCOG00000009190	-	95	33.032
ENSXCOG00000008410	si:dkey-34d22.5	55	40.164	ENSXCOG00000009194	-	88	40.164
ENSXCOG00000008410	si:dkey-34d22.5	97	34.404	ENSXCOG00000001357	rab11a	78	34.404
ENSXCOG00000008410	si:dkey-34d22.5	98	50.917	ENSXCOG00000006807	rab39bb	98	50.917
ENSXCOG00000008410	si:dkey-34d22.5	50	40.909	ENSXCOG00000011229	rras2	60	40.909
ENSXCOG00000008410	si:dkey-34d22.5	80	38.298	ENSXCOG00000009094	rab9b	91	38.298
ENSXCOG00000008410	si:dkey-34d22.5	77	40.351	ENSXCOG00000002232	rab6bb	78	40.351
ENSXCOG00000008410	si:dkey-34d22.5	82	34.426	ENSXCOG00000020125	rab25a	93	38.732
ENSXCOG00000008410	si:dkey-34d22.5	75	36.145	ENSXCOG00000020121	rab5aa	75	36.145
ENSXCOG00000008410	si:dkey-34d22.5	77	39.766	ENSXCOG00000015802	RAB41	77	39.766
ENSXCOG00000008410	si:dkey-34d22.5	80	34.270	ENSXCOG00000004227	rab25b	96	32.407
ENSXCOG00000008410	si:dkey-34d22.5	51	47.826	ENSXCOG00000003192	-	54	47.826
ENSXCOG00000008410	si:dkey-34d22.5	75	36.747	ENSXCOG00000016788	rab5c	86	34.921
ENSXCOG00000008410	si:dkey-34d22.5	74	42.012	ENSXCOG00000020575	RAB9A	75	42.012
ENSXCOG00000008410	si:dkey-34d22.5	76	31.977	ENSXCOG00000016370	RAB29	82	31.977
ENSXCOG00000008410	si:dkey-34d22.5	74	40.828	ENSXCOG00000019054	rab9a	75	40.828
ENSXCOG00000008410	si:dkey-34d22.5	85	36.598	ENSXCOG00000013344	rab33a	68	36.598
ENSXCOG00000008410	si:dkey-34d22.5	68	40.523	ENSXCOG00000012032	-	69	40.523
ENSXCOG00000008410	si:dkey-34d22.5	68	40.132	ENSXCOG00000000469	rab33ba	62	40.132
ENSXCOG00000008410	si:dkey-34d22.5	79	40.341	ENSXCOG00000013842	rab1ab	85	40.341
ENSXCOG00000008410	si:dkey-34d22.5	72	40.994	ENSXCOG00000019310	rab12	64	40.994
ENSXCOG00000008410	si:dkey-34d22.5	67	40.000	ENSXCOG00000018683	zgc:101559	63	40.000
ENSXCOG00000008410	si:dkey-34d22.5	91	33.816	ENSXCOG00000019921	rab7a	94	33.816
ENSXCOG00000008410	si:dkey-34d22.5	77	39.766	ENSXCOG00000006259	rab6a	78	39.766
ENSXCOG00000008410	si:dkey-34d22.5	69	32.026	ENSXCOG00000020508	kras	85	31.325
ENSXCOG00000008410	si:dkey-34d22.5	71	37.580	ENSXCOG00000011864	rab23	70	36.686
ENSXCOG00000008410	si:dkey-34d22.5	75	36.145	ENSXCOG00000006300	-	73	36.145
ENSXCOG00000008410	si:dkey-34d22.5	97	32.883	ENSXCOG00000008042	-	95	32.883
ENSXCOG00000008410	si:dkey-34d22.5	76	41.420	ENSXCOG00000019533	rab13	88	41.420
ENSXCOG00000008410	si:dkey-34d22.5	75	30.994	ENSXCOG00000013226	rasd4	78	30.994
ENSXCOG00000008410	si:dkey-34d22.5	73	33.333	ENSXCOG00000020608	hrasb	90	32.571
ENSXCOG00000008410	si:dkey-34d22.5	78	33.333	ENSXCOG00000009541	rab34a	67	33.333
ENSXCOG00000008410	si:dkey-34d22.5	79	41.143	ENSXCOG00000010695	zgc:171927	84	41.143
ENSXCOG00000008410	si:dkey-34d22.5	75	34.940	ENSXCOG00000016452	rab22a	84	34.940

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSXCOG00000008410	si:dkey-34d22.5	100	86.036	ENSACIG00000016958	si:dkey-34d22.5	100	86.036	Amphilophus_citrinellus
ENSXCOG00000008410	si:dkey-34d22.5	100	85.135	ENSATEG00000010784	si:dkey-34d22.5	86	85.135	Anabas_testudineus
ENSXCOG00000008410	si:dkey-34d22.5	90	62.814	ENSCPBG00000011236	-	91	62.814	Chrysemys_picta_bellii
ENSXCOG00000008410	si:dkey-34d22.5	100	72.973	ENSCSEG00000019183	si:dkey-34d22.5	100	72.973	Cynoglossus_semilaevis
ENSXCOG00000008410	si:dkey-34d22.5	100	90.991	ENSCVAG00000017064	si:dkey-34d22.5	100	90.991	Cyprinodon_variegatus
ENSXCOG00000008410	si:dkey-34d22.5	83	48.649	ENSDARG00000100379	si:dkey-34d22.2	99	48.649	Danio_rerio
ENSXCOG00000008410	si:dkey-34d22.5	97	57.407	ENSFALG00000001373	-	97	57.407	Ficedula_albicollis
ENSXCOG00000008410	si:dkey-34d22.5	100	91.928	ENSFHEG00000012041	si:dkey-34d22.5	100	91.928	Fundulus_heteroclitus
ENSXCOG00000008410	si:dkey-34d22.5	86	60.938	ENSGALG00000000994	-	90	60.938	Gallus_gallus
ENSXCOG00000008410	si:dkey-34d22.5	100	98.198	ENSGAFG00000008183	si:dkey-34d22.5	100	98.198	Gambusia_affinis
ENSXCOG00000008410	si:dkey-34d22.5	94	58.173	ENSGAGG00000004918	-	100	58.173	Gopherus_agassizii
ENSXCOG00000008410	si:dkey-34d22.5	99	73.303	ENSHCOG00000015692	si:dkey-34d22.5	99	73.303	Hippocampus_comes
ENSXCOG00000008410	si:dkey-34d22.5	100	86.486	ENSKMAG00000012778	si:dkey-34d22.5	100	86.486	Kryptolebias_marmoratus
ENSXCOG00000008410	si:dkey-34d22.5	99	81.448	ENSLBEG00000002926	si:dkey-34d22.5	100	81.448	Labrus_bergylta
ENSXCOG00000008410	si:dkey-34d22.5	98	58.257	ENSLACG00000012674	si:dkey-34d22.5	99	58.257	Latimeria_chalumnae
ENSXCOG00000008410	si:dkey-34d22.5	98	66.359	ENSLOCG00000003467	si:dkey-34d22.5	98	69.124	Lepisosteus_oculatus
ENSXCOG00000008410	si:dkey-34d22.5	100	79.279	ENSMMOG00000006846	si:dkey-34d22.5	100	79.279	Mola_mola
ENSXCOG00000008410	si:dkey-34d22.5	100	81.081	ENSMALG00000013152	si:dkey-34d22.5	100	81.081	Monopterus_albus
ENSXCOG00000008410	si:dkey-34d22.5	99	84.615	ENSORLG00000014099	si:dkey-34d22.5	99	84.615	Oryzias_latipes
ENSXCOG00000008410	si:dkey-34d22.5	99	84.163	ENSORLG00020020277	si:dkey-34d22.5	99	84.163	Oryzias_latipes_hni
ENSXCOG00000008410	si:dkey-34d22.5	99	84.615	ENSORLG00015000142	si:dkey-34d22.5	99	84.615	Oryzias_latipes_hsok
ENSXCOG00000008410	si:dkey-34d22.5	91	89.604	ENSOMEG00000017958	si:dkey-34d22.5	99	86.425	Oryzias_melastigma
ENSXCOG00000008410	si:dkey-34d22.5	97	72.685	ENSPKIG00000021209	si:dkey-34d22.5	99	72.685	Paramormyrops_kingsleyae
ENSXCOG00000008410	si:dkey-34d22.5	91	61.692	ENSPSIG00000006606	-	99	61.692	Pelodiscus_sinensis
ENSXCOG00000008410	si:dkey-34d22.5	99	81.900	ENSPMGG00000001298	-	99	81.900	Periophthalmus_magnuspinnatus
ENSXCOG00000008410	si:dkey-34d22.5	89	59.898	ENSPCIG00000022399	-	88	59.898	Phascolarctos_cinereus
ENSXCOG00000008410	si:dkey-34d22.5	100	96.847	ENSPFOG00000014499	si:dkey-34d22.5	100	96.847	Poecilia_formosa
ENSXCOG00000008410	si:dkey-34d22.5	100	96.847	ENSPLAG00000007773	si:dkey-34d22.5	100	96.847	Poecilia_latipinna
ENSXCOG00000008410	si:dkey-34d22.5	100	96.847	ENSPMEG00000012932	si:dkey-34d22.5	100	96.847	Poecilia_mexicana
ENSXCOG00000008410	si:dkey-34d22.5	89	58.883	ENSSHAG00000008520	-	88	58.883	Sarcophilus_harrisii
ENSXCOG00000008410	si:dkey-34d22.5	97	68.837	ENSSFOG00015012088	rab42	96	68.837	Scleropages_formosus
ENSXCOG00000008410	si:dkey-34d22.5	100	86.937	ENSSLDG00000002646	si:dkey-34d22.5	100	86.937	Seriola_lalandi_dorsalis
ENSXCOG00000008410	si:dkey-34d22.5	99	86.425	ENSSPAG00000012955	si:dkey-34d22.5	99	86.425	Stegastes_partitus
ENSXCOG00000008410	si:dkey-34d22.5	93	49.515	ENSXETG00000020622	rab39a	98	49.515	Xenopus_tropicalis
ENSXCOG00000008410	si:dkey-34d22.5	100	100.000	ENSXMAG00000029317	si:dkey-34d22.5	100	100.000	Xiphophorus_maculatus