EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSXCOG00000009001 (Gene tree)
Gene ID: -
Gene Symbol: -
Alias: -
Full Name: -
Gene Type: protein_coding
Species: Xiphophorus_couchianus
Status: putative
Strand: Plus strand
Length: 4476 bases
Position: chrKQ557225.1:9501541-9506016
Accession: -
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSXCOP00000011897	RRM_1	PF00076.22	7.3e-37	1	2
ENSXCOP00000011897	RRM_1	PF00076.22	7.3e-37	2	2
ENSXCOP00000011896	RRM_1	PF00076.22	8.4e-37	1	2
ENSXCOP00000011896	RRM_1	PF00076.22	8.4e-37	2	2

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSXCOT00000012032	-	750	-	ENSXCOP00000011896	249 (aa)	-	-
ENSXCOT00000012033	-	699	-	ENSXCOP00000011897	232 (aa)	-	-

Gene Model

Click here to download ENSXCOG00000009001's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSXCOG00000009001's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSXCOG00000009001	-	75	42.012	ENSXCOG00000017639	hnrnpd	64	41.860
ENSXCOG00000009001	-	79	34.444	ENSXCOG00000013190	pabpc4	82	34.409
ENSXCOG00000009001	-	67	47.368	ENSXCOG00000008262	cirbpa	91	49.231
ENSXCOG00000009001	-	77	35.211	ENSXCOG00000017605	MSI1	50	35.211
ENSXCOG00000009001	-	94	75.229	ENSXCOG00000019224	HNRNPA1P48	76	84.066
ENSXCOG00000009001	-	92	34.783	ENSXCOG00000003397	hnrnpaba	79	33.878
ENSXCOG00000009001	-	99	34.934	ENSXCOG00000018775	-	67	38.251
ENSXCOG00000009001	-	86	35.484	ENSXCOG00000006113	msi2a	51	35.484

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSXCOG00000009001	-	99	80.000	ENSAPOG00000019369	-	57	97.368	Acanthochromis_polyacanthus
ENSXCOG00000009001	-	76	55.932	ENSACIG00000021815	-	87	55.866	Amphilophus_citrinellus
ENSXCOG00000009001	-	93	93.578	ENSAOCG00000005289	-	57	97.368	Amphiprion_ocellaris
ENSXCOG00000009001	-	93	93.578	ENSAPEG00000004179	-	57	97.368	Amphiprion_percula
ENSXCOG00000009001	-	92	94.419	ENSATEG00000022918	hnrnpa1a	87	98.734	Anabas_testudineus
ENSXCOG00000009001	-	75	59.119	ENSATEG00000003423	-	77	57.407	Anabas_testudineus
ENSXCOG00000009001	-	90	52.153	ENSACAG00000017109	-	70	52.838	Anolis_carolinensis
ENSXCOG00000009001	-	95	91.111	ENSACLG00000006940	-	81	76.557	Astatotilapia_calliptera
ENSXCOG00000009001	-	78	63.277	ENSAMXG00000037730	-	53	62.778	Astyanax_mexicanus
ENSXCOG00000009001	-	95	84.581	ENSCSEG00000007589	hnrnpa1a	69	91.398	Cynoglossus_semilaevis
ENSXCOG00000009001	-	79	54.190	ENSCSEG00000014051	-	71	54.902	Cynoglossus_semilaevis
ENSXCOG00000009001	-	99	81.022	ENSCVAG00000012637	hnrnpa1a	81	80.657	Cyprinodon_variegatus
ENSXCOG00000009001	-	82	80.829	ENSDARG00000011020	hnrnpa1a	78	84.177	Danio_rerio
ENSXCOG00000009001	-	90	53.623	ENSDORG00000026425	-	59	53.623	Dipodomys_ordii
ENSXCOG00000009001	-	83	89.119	ENSELUG00000007372	-	52	89.785	Esox_lucius
ENSXCOG00000009001	-	78	61.798	ENSGMOG00000020353	-	94	61.667	Gadus_morhua
ENSXCOG00000009001	-	79	88.043	ENSGMOG00000017950	hnrnpa1a	50	87.568	Gadus_morhua
ENSXCOG00000009001	-	77	54.494	ENSGAFG00000016803	-	54	54.444	Gambusia_affinis
ENSXCOG00000009001	-	100	82.182	ENSGAFG00000007751	-	81	82.909	Gambusia_affinis
ENSXCOG00000009001	-	91	85.388	ENSGACG00000009435	-	63	79.058	Gasterosteus_aculeatus
ENSXCOG00000009001	-	95	91.111	ENSHBUG00000005647	hnrnpa1a	82	76.557	Haplochromis_burtoni
ENSXCOG00000009001	-	84	84.021	ENSIPUG00000022440	-	73	84.615	Ictalurus_punctatus
ENSXCOG00000009001	-	87	82.090	ENSIPUG00000002023	hnrnpa1a	75	87.500	Ictalurus_punctatus
ENSXCOG00000009001	-	78	62.712	ENSIPUG00000001991	-	77	62.570	Ictalurus_punctatus
ENSXCOG00000009001	-	78	66.111	ENSJJAG00000009178	-	67	56.198	Jaculus_jaculus
ENSXCOG00000009001	-	92	95.349	ENSKMAG00000020859	-	68	86.087	Kryptolebias_marmoratus
ENSXCOG00000009001	-	87	86.758	ENSLBEG00000010010	hnrnpa1a	67	83.333	Labrus_bergylta
ENSXCOG00000009001	-	79	71.351	ENSMFAG00000028351	-	55	70.157	Macaca_fascicularis
ENSXCOG00000009001	-	92	93.953	ENSMAMG00000007606	-	56	98.421	Mastacembelus_armatus
ENSXCOG00000009001	-	95	91.111	ENSMZEG00005027173	hnrnpa1a	82	76.557	Maylandia_zebra
ENSXCOG00000009001	-	83	94.819	ENSMMOG00000008251	hnrnpa1a	79	95.263	Mola_mola
ENSXCOG00000009001	-	76	55.932	ENSMALG00000008886	-	87	55.866	Monopterus_albus
ENSXCOG00000009001	-	93	92.661	ENSMALG00000014091	hnrnpa1a	80	77.536	Monopterus_albus
ENSXCOG00000009001	-	83	57.979	ENSNBRG00000014469	-	84	58.889	Neolamprologus_brichardi
ENSXCOG00000009001	-	95	91.111	ENSNBRG00000018441	-	82	76.557	Neolamprologus_brichardi
ENSXCOG00000009001	-	90	48.768	ENSORLG00000029240	-	94	52.299	Oryzias_latipes
ENSXCOG00000009001	-	92	93.056	ENSORLG00000008001	-	83	79.044	Oryzias_latipes
ENSXCOG00000009001	-	92	93.056	ENSORLG00020006582	hnrnpa1a	86	96.721	Oryzias_latipes_hni
ENSXCOG00000009001	-	76	51.149	ENSORLG00020006043	-	59	52.055	Oryzias_latipes_hni
ENSXCOG00000009001	-	94	49.624	ENSORLG00020022498	-	84	52.299	Oryzias_latipes_hni
ENSXCOG00000009001	-	92	93.519	ENSORLG00015022294	-	83	79.412	Oryzias_latipes_hsok
ENSXCOG00000009001	-	92	93.981	ENSOMEG00000015959	-	83	79.412	Oryzias_melastigma
ENSXCOG00000009001	-	77	58.960	ENSPMGG00000016392	-	93	58.960	Periophthalmus_magnuspinnatus
ENSXCOG00000009001	-	81	94.149	ENSPMGG00000011804	hnrnpa1a	69	94.086	Periophthalmus_magnuspinnatus
ENSXCOG00000009001	-	99	82.182	ENSPFOG00000001825	-	81	82.909	Poecilia_formosa
ENSXCOG00000009001	-	99	82.182	ENSPMEG00000002425	-	81	82.909	Poecilia_mexicana
ENSXCOG00000009001	-	83	57.979	ENSPNYG00000020729	-	92	58.889	Pundamilia_nyererei
ENSXCOG00000009001	-	84	82.653	ENSPNAG00000021630	-	78	68.359	Pygocentrus_nattereri
ENSXCOG00000009001	-	81	82.540	ENSPNAG00000007752	hnrnpa1a	78	79.769	Pygocentrus_nattereri
ENSXCOG00000009001	-	90	87.560	ENSSMAG00000004641	hnrnpa1a	80	81.496	Scophthalmus_maximus
ENSXCOG00000009001	-	76	55.682	ENSSMAG00000010246	-	79	55.618	Scophthalmus_maximus
ENSXCOG00000009001	-	77	59.036	ENSSMAG00000010279	-	93	59.119	Scophthalmus_maximus
ENSXCOG00000009001	-	84	97.949	ENSSDUG00000013908	hnrnpa1a	96	88.739	Seriola_dumerili
ENSXCOG00000009001	-	77	59.538	ENSSDUG00000002431	-	82	59.538	Seriola_dumerili
ENSXCOG00000009001	-	84	97.949	ENSSLDG00000003718	hnrnpa1a	80	99.291	Seriola_lalandi_dorsalis
ENSXCOG00000009001	-	92	84.810	ENSSPAG00000018518	-	57	96.296	Stegastes_partitus
ENSXCOG00000009001	-	91	87.383	ENSTRUG00000020491	-	58	92.593	Takifugu_rubripes
ENSXCOG00000009001	-	91	51.542	ENSTNIG00000007398	-	80	60.131	Tetraodon_nigroviridis
ENSXCOG00000009001	-	100	82.246	ENSXMAG00000008076	-	81	82.971	Xiphophorus_maculatus