EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: ENSXCOG00000009159 (Gene tree)
Gene ID: -
Gene Symbol: smndc1
Alias: TDRD10|spf30|wu:fb37h07|wu:fc23a07
Full Name: survival motor neuron domain containing 1
Gene Type: protein_coding
Species: Xiphophorus_couchianus
Status: putative
Strand: Minus strand
Length: 3044 bases
Position: chrKQ557215.1:17339465-17342508
Accession: ZDB-GENE-030131-614
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSXCOP00000012112	SMN	PF06003.12	2.1e-16	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSXCOT00000012251	-	711	-	ENSXCOP00000012112	236 (aa)	-	-

Gene Model

Click here to download ENSXCOG00000009159's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSXCOG00000009159's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSXCOG00000009159	smndc1	100	75.210	ENSG00000119953	SMNDC1	100	75.210	Homo_sapiens
ENSXCOG00000009159	smndc1	100	89.916	ENSAPOG00000021772	smndc1	100	89.916	Acanthochromis_polyacanthus
ENSXCOG00000009159	smndc1	100	75.210	ENSAMEG00000005251	SMNDC1	100	75.210	Ailuropoda_melanoleuca
ENSXCOG00000009159	smndc1	100	89.496	ENSACIG00000004819	smndc1	100	89.496	Amphilophus_citrinellus
ENSXCOG00000009159	smndc1	100	88.655	ENSAOCG00000017869	smndc1	100	88.655	Amphiprion_ocellaris
ENSXCOG00000009159	smndc1	100	88.655	ENSAPEG00000007752	smndc1	100	88.655	Amphiprion_percula
ENSXCOG00000009159	smndc1	100	92.017	ENSATEG00000006830	smndc1	100	92.017	Anabas_testudineus
ENSXCOG00000009159	smndc1	83	75.758	ENSAPLG00000004322	SMNDC1	100	75.758	Anas_platyrhynchos
ENSXCOG00000009159	smndc1	100	76.471	ENSACAG00000005983	SMNDC1	100	76.471	Anolis_carolinensis
ENSXCOG00000009159	smndc1	100	75.210	ENSANAG00000032875	SMNDC1	100	75.210	Aotus_nancymaae
ENSXCOG00000009159	smndc1	100	88.235	ENSACLG00000016360	smndc1	100	88.235	Astatotilapia_calliptera
ENSXCOG00000009159	smndc1	100	79.747	ENSAMXG00000020310	smndc1	100	79.747	Astyanax_mexicanus
ENSXCOG00000009159	smndc1	100	75.210	ENSBTAG00000000551	SMNDC1	100	75.210	Bos_taurus
ENSXCOG00000009159	smndc1	100	75.210	ENSCJAG00000018624	SMNDC1	100	75.210	Callithrix_jacchus
ENSXCOG00000009159	smndc1	100	75.210	ENSCAFG00000010720	SMNDC1	100	75.210	Canis_familiaris
ENSXCOG00000009159	smndc1	100	75.210	ENSCAFG00020011913	SMNDC1	100	75.210	Canis_lupus_dingo
ENSXCOG00000009159	smndc1	100	75.210	ENSCHIG00000010604	SMNDC1	100	75.210	Capra_hircus
ENSXCOG00000009159	smndc1	100	75.210	ENSTSYG00000026454	SMNDC1	100	75.210	Carlito_syrichta
ENSXCOG00000009159	smndc1	100	61.667	ENSCAPG00000009132	SMNDC1	100	71.642	Cavia_aperea
ENSXCOG00000009159	smndc1	100	75.210	ENSCPOG00000031666	SMNDC1	100	75.210	Cavia_porcellus
ENSXCOG00000009159	smndc1	100	75.210	ENSCCAG00000021793	SMNDC1	100	75.210	Cebus_capucinus
ENSXCOG00000009159	smndc1	100	74.790	ENSCATG00000035910	SMNDC1	100	74.790	Cercocebus_atys
ENSXCOG00000009159	smndc1	100	75.210	ENSCLAG00000002838	SMNDC1	100	75.210	Chinchilla_lanigera
ENSXCOG00000009159	smndc1	100	75.210	ENSCSAG00000005169	SMNDC1	100	75.210	Chlorocebus_sabaeus
ENSXCOG00000009159	smndc1	81	70.466	ENSCHOG00000002936	SMNDC1	100	70.466	Choloepus_hoffmanni
ENSXCOG00000009159	smndc1	100	75.630	ENSCPBG00000012837	SMNDC1	100	75.630	Chrysemys_picta_bellii
ENSXCOG00000009159	smndc1	100	75.210	ENSCANG00000031720	-	100	75.210	Colobus_angolensis_palliatus
ENSXCOG00000009159	smndc1	100	68.908	ENSCANG00000034620	-	100	68.908	Colobus_angolensis_palliatus
ENSXCOG00000009159	smndc1	100	58.403	ENSCANG00000036994	-	100	58.403	Colobus_angolensis_palliatus
ENSXCOG00000009159	smndc1	100	74.790	ENSCGRG00001012973	Smndc1	100	74.790	Cricetulus_griseus_chok1gshd
ENSXCOG00000009159	smndc1	100	74.790	ENSCGRG00000012396	Smndc1	100	74.790	Cricetulus_griseus_crigri
ENSXCOG00000009159	smndc1	100	86.441	ENSCSEG00000015621	smndc1	100	86.441	Cynoglossus_semilaevis
ENSXCOG00000009159	smndc1	100	92.017	ENSCVAG00000020432	smndc1	100	92.017	Cyprinodon_variegatus
ENSXCOG00000009159	smndc1	100	83.544	ENSDARG00000056235	smndc1	100	83.544	Danio_rerio
ENSXCOG00000009159	smndc1	100	75.210	ENSDNOG00000016387	SMNDC1	83	75.210	Dasypus_novemcinctus
ENSXCOG00000009159	smndc1	100	75.210	ENSDORG00000023715	Smndc1	100	75.210	Dipodomys_ordii
ENSXCOG00000009159	smndc1	95	41.296	FBgn0039977	CG17454	98	42.915	Drosophila_melanogaster
ENSXCOG00000009159	smndc1	100	65.975	ENSEBUG00000010929	smndc1	100	68.050	Eptatretus_burgeri
ENSXCOG00000009159	smndc1	100	75.210	ENSEASG00005014930	SMNDC1	100	75.210	Equus_asinus_asinus
ENSXCOG00000009159	smndc1	100	75.210	ENSECAG00000029973	SMNDC1	100	75.210	Equus_caballus
ENSXCOG00000009159	smndc1	61	86.458	ENSEEUG00000013407	-	72	86.458	Erinaceus_europaeus
ENSXCOG00000009159	smndc1	100	82.203	ENSELUG00000000227	smndc1	100	82.203	Esox_lucius
ENSXCOG00000009159	smndc1	100	75.210	ENSFCAG00000027353	SMNDC1	100	75.210	Felis_catus
ENSXCOG00000009159	smndc1	100	76.891	ENSFALG00000002306	SMNDC1	100	76.891	Ficedula_albicollis
ENSXCOG00000009159	smndc1	100	75.210	ENSFDAG00000006468	SMNDC1	100	75.210	Fukomys_damarensis
ENSXCOG00000009159	smndc1	100	92.857	ENSFHEG00000020150	smndc1	100	92.857	Fundulus_heteroclitus
ENSXCOG00000009159	smndc1	100	81.780	ENSGMOG00000016585	smndc1	100	81.780	Gadus_morhua
ENSXCOG00000009159	smndc1	100	76.891	ENSGALG00000008561	SMNDC1	100	76.891	Gallus_gallus
ENSXCOG00000009159	smndc1	100	95.798	ENSGAFG00000011582	smndc1	100	95.798	Gambusia_affinis
ENSXCOG00000009159	smndc1	100	86.555	ENSGACG00000009468	smndc1	100	86.555	Gasterosteus_aculeatus
ENSXCOG00000009159	smndc1	100	75.630	ENSGAGG00000024547	SMNDC1	100	75.630	Gopherus_agassizii
ENSXCOG00000009159	smndc1	100	75.210	ENSGGOG00000010071	SMNDC1	100	75.210	Gorilla_gorilla
ENSXCOG00000009159	smndc1	100	88.235	ENSHBUG00000017596	smndc1	100	88.235	Haplochromis_burtoni
ENSXCOG00000009159	smndc1	100	75.210	ENSHGLG00000013390	-	100	75.210	Heterocephalus_glaber_female
ENSXCOG00000009159	smndc1	100	56.557	ENSHGLG00000001157	-	100	53.086	Heterocephalus_glaber_female
ENSXCOG00000009159	smndc1	100	75.210	ENSHGLG00100004814	-	100	75.210	Heterocephalus_glaber_male
ENSXCOG00000009159	smndc1	100	61.157	ENSHGLG00100004278	-	100	61.157	Heterocephalus_glaber_male
ENSXCOG00000009159	smndc1	100	84.100	ENSHCOG00000000783	smndc1	100	84.100	Hippocampus_comes
ENSXCOG00000009159	smndc1	100	81.435	ENSIPUG00000004217	smndc1	100	81.435	Ictalurus_punctatus
ENSXCOG00000009159	smndc1	100	75.210	ENSSTOG00000006088	SMNDC1	100	75.210	Ictidomys_tridecemlineatus
ENSXCOG00000009159	smndc1	100	75.210	ENSJJAG00000019974	Smndc1	100	75.210	Jaculus_jaculus
ENSXCOG00000009159	smndc1	100	89.916	ENSKMAG00000020134	smndc1	100	89.916	Kryptolebias_marmoratus
ENSXCOG00000009159	smndc1	100	88.608	ENSLBEG00000004598	smndc1	100	88.608	Labrus_bergylta
ENSXCOG00000009159	smndc1	100	73.529	ENSLACG00000007784	SMNDC1	100	73.529	Latimeria_chalumnae
ENSXCOG00000009159	smndc1	100	80.591	ENSLOCG00000012355	smndc1	100	80.591	Lepisosteus_oculatus
ENSXCOG00000009159	smndc1	100	74.790	ENSLAFG00000014353	SMNDC1	100	74.790	Loxodonta_africana
ENSXCOG00000009159	smndc1	100	62.605	ENSMFAG00000038381	-	100	62.605	Macaca_fascicularis
ENSXCOG00000009159	smndc1	100	75.210	ENSMFAG00000002433	-	100	75.210	Macaca_fascicularis
ENSXCOG00000009159	smndc1	100	62.605	ENSMMUG00000045875	-	100	62.605	Macaca_mulatta
ENSXCOG00000009159	smndc1	100	75.210	ENSMMUG00000007775	SMNDC1	100	75.210	Macaca_mulatta
ENSXCOG00000009159	smndc1	100	75.210	ENSMNEG00000042963	-	100	75.210	Macaca_nemestrina
ENSXCOG00000009159	smndc1	100	65.966	ENSMNEG00000033853	-	100	65.966	Macaca_nemestrina
ENSXCOG00000009159	smndc1	100	70.464	ENSMLEG00000040236	SMNDC1	100	70.042	Mandrillus_leucophaeus
ENSXCOG00000009159	smndc1	89	85.915	ENSMAMG00000018233	smndc1	87	85.915	Mastacembelus_armatus
ENSXCOG00000009159	smndc1	100	88.235	ENSMZEG00005027510	smndc1	100	88.235	Maylandia_zebra
ENSXCOG00000009159	smndc1	99	67.932	ENSMGAG00000010777	SMNDC1	99	67.932	Meleagris_gallopavo
ENSXCOG00000009159	smndc1	100	75.210	ENSMAUG00000012243	-	100	75.210	Mesocricetus_auratus
ENSXCOG00000009159	smndc1	99	60.426	ENSMAUG00000005459	-	93	61.277	Mesocricetus_auratus
ENSXCOG00000009159	smndc1	100	65.546	ENSMICG00000031640	-	100	65.546	Microcebus_murinus
ENSXCOG00000009159	smndc1	100	74.790	ENSMICG00000027336	-	100	74.790	Microcebus_murinus
ENSXCOG00000009159	smndc1	100	74.790	ENSMOCG00000002458	Smndc1	100	74.790	Microtus_ochrogaster
ENSXCOG00000009159	smndc1	100	86.555	ENSMMOG00000008856	smndc1	100	86.555	Mola_mola
ENSXCOG00000009159	smndc1	100	75.210	ENSMODG00000010542	SMNDC1	100	75.210	Monodelphis_domestica
ENSXCOG00000009159	smndc1	100	87.815	ENSMALG00000017598	smndc1	100	87.815	Monopterus_albus
ENSXCOG00000009159	smndc1	100	75.210	MGP_CAROLIEiJ_G0023072	Smndc1	100	75.210	Mus_caroli
ENSXCOG00000009159	smndc1	100	75.210	ENSMUSG00000025024	Smndc1	100	75.210	Mus_musculus
ENSXCOG00000009159	smndc1	100	75.210	MGP_PahariEiJ_G0014560	Smndc1	100	75.210	Mus_pahari
ENSXCOG00000009159	smndc1	100	75.210	MGP_SPRETEiJ_G0023993	Smndc1	100	75.210	Mus_spretus
ENSXCOG00000009159	smndc1	100	75.210	ENSMPUG00000002089	SMNDC1	100	75.210	Mustela_putorius_furo
ENSXCOG00000009159	smndc1	100	75.210	ENSMLUG00000016007	SMNDC1	100	75.210	Myotis_lucifugus
ENSXCOG00000009159	smndc1	100	75.630	ENSNGAG00000006833	Smndc1	100	75.630	Nannospalax_galili
ENSXCOG00000009159	smndc1	100	88.655	ENSNBRG00000017089	smndc1	100	88.655	Neolamprologus_brichardi
ENSXCOG00000009159	smndc1	100	75.210	ENSNLEG00000015471	SMNDC1	100	75.210	Nomascus_leucogenys
ENSXCOG00000009159	smndc1	70	59.394	ENSMEUG00000010120	-	98	55.102	Notamacropus_eugenii
ENSXCOG00000009159	smndc1	100	75.210	ENSOPRG00000015348	SMNDC1	100	75.210	Ochotona_princeps
ENSXCOG00000009159	smndc1	100	55.274	ENSODEG00000007594	-	100	53.586	Octodon_degus
ENSXCOG00000009159	smndc1	100	88.655	ENSONIG00000000434	smndc1	100	88.655	Oreochromis_niloticus
ENSXCOG00000009159	smndc1	100	75.630	ENSOANG00000001598	SMNDC1	100	75.630	Ornithorhynchus_anatinus
ENSXCOG00000009159	smndc1	100	74.790	ENSOCUG00000008145	-	100	74.790	Oryctolagus_cuniculus
ENSXCOG00000009159	smndc1	100	55.042	ENSOCUG00000012274	-	100	56.723	Oryctolagus_cuniculus
ENSXCOG00000009159	smndc1	100	82.773	ENSORLG00000005934	smndc1	95	82.773	Oryzias_latipes
ENSXCOG00000009159	smndc1	100	82.773	ENSORLG00020008796	smndc1	95	82.773	Oryzias_latipes_hni
ENSXCOG00000009159	smndc1	100	82.773	ENSORLG00015013666	smndc1	100	82.773	Oryzias_latipes_hsok
ENSXCOG00000009159	smndc1	100	82.700	ENSOMEG00000007590	smndc1	100	82.700	Oryzias_melastigma
ENSXCOG00000009159	smndc1	100	75.210	ENSOGAG00000000571	SMNDC1	100	75.210	Otolemur_garnettii
ENSXCOG00000009159	smndc1	100	75.210	ENSOARG00000009500	SMNDC1	100	75.210	Ovis_aries
ENSXCOG00000009159	smndc1	100	75.210	ENSPPAG00000027815	SMNDC1	100	75.210	Pan_paniscus
ENSXCOG00000009159	smndc1	100	75.210	ENSPPRG00000013749	SMNDC1	100	75.210	Panthera_pardus
ENSXCOG00000009159	smndc1	100	75.210	ENSPTIG00000011451	SMNDC1	100	75.210	Panthera_tigris_altaica
ENSXCOG00000009159	smndc1	100	75.210	ENSPTRG00000002937	SMNDC1	100	75.210	Pan_troglodytes
ENSXCOG00000009159	smndc1	100	70.763	ENSPANG00000031346	-	100	70.763	Papio_anubis
ENSXCOG00000009159	smndc1	100	75.210	ENSPANG00000020805	-	100	75.210	Papio_anubis
ENSXCOG00000009159	smndc1	100	78.903	ENSPKIG00000017164	smndc1	100	78.903	Paramormyrops_kingsleyae
ENSXCOG00000009159	smndc1	100	75.630	ENSPSIG00000012257	SMNDC1	100	75.630	Pelodiscus_sinensis
ENSXCOG00000009159	smndc1	100	82.627	ENSPMGG00000015651	smndc1	100	82.627	Periophthalmus_magnuspinnatus
ENSXCOG00000009159	smndc1	100	75.210	ENSPEMG00000022058	Smndc1	100	75.210	Peromyscus_maniculatus_bairdii
ENSXCOG00000009159	smndc1	100	66.255	ENSPMAG00000007705	smndc1	100	66.255	Petromyzon_marinus
ENSXCOG00000009159	smndc1	95	57.778	ENSPCIG00000009693	-	98	57.778	Phascolarctos_cinereus
ENSXCOG00000009159	smndc1	100	75.210	ENSPCIG00000018419	SMNDC1	100	75.210	Phascolarctos_cinereus
ENSXCOG00000009159	smndc1	100	95.798	ENSPFOG00000017113	smndc1	100	95.798	Poecilia_formosa
ENSXCOG00000009159	smndc1	100	95.378	ENSPLAG00000010372	smndc1	100	95.378	Poecilia_latipinna
ENSXCOG00000009159	smndc1	100	95.378	ENSPMEG00000012288	smndc1	100	95.378	Poecilia_mexicana
ENSXCOG00000009159	smndc1	100	94.958	ENSPREG00000012279	smndc1	100	94.958	Poecilia_reticulata
ENSXCOG00000009159	smndc1	100	75.210	ENSPPYG00000002643	SMNDC1	100	75.210	Pongo_abelii
ENSXCOG00000009159	smndc1	81	70.466	ENSPCAG00000016183	SMNDC1	100	70.466	Procavia_capensis
ENSXCOG00000009159	smndc1	100	74.790	ENSPCOG00000024343	SMNDC1	100	74.790	Propithecus_coquereli
ENSXCOG00000009159	smndc1	78	89.583	ENSPVAG00000004368	SMNDC1	77	89.583	Pteropus_vampyrus
ENSXCOG00000009159	smndc1	83	86.364	ENSPNYG00000024093	smndc1	86	86.364	Pundamilia_nyererei
ENSXCOG00000009159	smndc1	100	78.903	ENSPNAG00000025285	smndc1	100	78.903	Pygocentrus_nattereri
ENSXCOG00000009159	smndc1	100	75.210	ENSRNOG00000014833	Smndc1	100	75.210	Rattus_norvegicus
ENSXCOG00000009159	smndc1	100	74.790	ENSRBIG00000000224	-	100	74.790	Rhinopithecus_bieti
ENSXCOG00000009159	smndc1	100	61.441	ENSRBIG00000032452	-	100	61.441	Rhinopithecus_bieti
ENSXCOG00000009159	smndc1	100	61.441	ENSRROG00000039125	-	100	61.441	Rhinopithecus_roxellana
ENSXCOG00000009159	smndc1	100	75.210	ENSRROG00000044992	-	100	75.210	Rhinopithecus_roxellana
ENSXCOG00000009159	smndc1	100	75.210	ENSSBOG00000026789	SMNDC1	100	75.210	Saimiri_boliviensis_boliviensis
ENSXCOG00000009159	smndc1	100	75.210	ENSSHAG00000015189	SMNDC1	100	75.210	Sarcophilus_harrisii
ENSXCOG00000009159	smndc1	100	78.059	ENSSFOG00015008311	smndc1	100	78.059	Scleropages_formosus
ENSXCOG00000009159	smndc1	100	90.756	ENSSMAG00000020118	smndc1	100	90.756	Scophthalmus_maximus
ENSXCOG00000009159	smndc1	100	89.916	ENSSDUG00000015330	smndc1	100	89.916	Seriola_dumerili
ENSXCOG00000009159	smndc1	100	89.496	ENSSLDG00000017325	smndc1	100	89.496	Seriola_lalandi_dorsalis
ENSXCOG00000009159	smndc1	100	75.210	ENSSARG00000006063	SMNDC1	100	75.210	Sorex_araneus
ENSXCOG00000009159	smndc1	100	76.891	ENSSPUG00000004574	SMNDC1	100	76.891	Sphenodon_punctatus
ENSXCOG00000009159	smndc1	100	89.076	ENSSPAG00000000338	smndc1	100	89.076	Stegastes_partitus
ENSXCOG00000009159	smndc1	100	75.210	ENSSSCG00000030507	SMNDC1	100	75.210	Sus_scrofa
ENSXCOG00000009159	smndc1	100	76.891	ENSTGUG00000010599	SMNDC1	100	76.891	Taeniopygia_guttata
ENSXCOG00000009159	smndc1	100	82.773	ENSTRUG00000023281	smndc1	100	82.773	Takifugu_rubripes
ENSXCOG00000009159	smndc1	100	83.613	ENSTNIG00000013331	smndc1	100	83.613	Tetraodon_nigroviridis
ENSXCOG00000009159	smndc1	100	75.210	ENSTBEG00000014337	SMNDC1	100	75.210	Tupaia_belangeri
ENSXCOG00000009159	smndc1	100	75.210	ENSUAMG00000008142	SMNDC1	100	75.210	Ursus_americanus
ENSXCOG00000009159	smndc1	100	75.210	ENSUMAG00000023722	SMNDC1	100	75.210	Ursus_maritimus
ENSXCOG00000009159	smndc1	83	74.242	ENSVPAG00000003402	SMNDC1	100	74.242	Vicugna_pacos
ENSXCOG00000009159	smndc1	100	75.210	ENSVVUG00000007820	SMNDC1	100	75.210	Vulpes_vulpes
ENSXCOG00000009159	smndc1	58	63.971	ENSXETG00000015415	SMNDC1	96	63.971	Xenopus_tropicalis
ENSXCOG00000009159	smndc1	100	99.160	ENSXMAG00000012755	smndc1	100	99.160	Xiphophorus_maculatus