EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSXCOG00000009186 (Gene tree)
Gene ID: -
Gene Symbol: -
Alias: -
Full Name: -
Gene Type: protein_coding
Species: Xiphophorus_couchianus
Status: putative
Strand: Minus strand
Length: 5329 bases
Position: chrKQ557225.1:10349969-10355297
Accession: -
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSXCOP00000012147	zf-C2H2	PF00096.26	6.8e-21	1	4
ENSXCOP00000012147	zf-C2H2	PF00096.26	6.8e-21	2	4
ENSXCOP00000012147	zf-C2H2	PF00096.26	6.8e-21	3	4
ENSXCOP00000012147	zf-C2H2	PF00096.26	6.8e-21	4	4
ENSXCOP00000012147	zf-met	PF12874.7	2.2e-05	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSXCOT00000012286	-	378	-	ENSXCOP00000012147	125 (aa)	-	-

Gene Model

Click here to download ENSXCOG00000009186's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSXCOG00000009186's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSXCOG00000009186	-	93	47.222	ENSXCOG00000002898	-	83	47.222
ENSXCOG00000009186	-	90	44.231	ENSXCOG00000001292	-	80	44.231
ENSXCOG00000009186	-	90	48.039	ENSXCOG00000012921	-	95	46.078
ENSXCOG00000009186	-	86	47.573	ENSXCOG00000003537	-	73	47.573
ENSXCOG00000009186	-	93	40.187	ENSXCOG00000015084	snai2	54	40.187
ENSXCOG00000009186	-	89	47.423	ENSXCOG00000002512	-	75	47.423
ENSXCOG00000009186	-	89	50.485	ENSXCOG00000006553	-	91	50.485
ENSXCOG00000009186	-	100	47.573	ENSXCOG00000017328	-	76	47.573
ENSXCOG00000009186	-	98	50.588	ENSXCOG00000008062	-	97	49.550
ENSXCOG00000009186	-	96	41.346	ENSXCOG00000003435	-	77	41.346
ENSXCOG00000009186	-	93	46.000	ENSXCOG00000003431	-	79	47.115
ENSXCOG00000009186	-	89	44.144	ENSXCOG00000010576	-	71	44.144
ENSXCOG00000009186	-	96	48.649	ENSXCOG00000013004	-	74	48.649
ENSXCOG00000009186	-	90	49.383	ENSXCOG00000006951	-	76	49.383
ENSXCOG00000009186	-	91	42.202	ENSXCOG00000013787	-	53	42.202
ENSXCOG00000009186	-	90	48.214	ENSXCOG00000007979	-	67	48.214
ENSXCOG00000009186	-	98	46.667	ENSXCOG00000016117	-	99	46.667
ENSXCOG00000009186	-	92	48.515	ENSXCOG00000008567	prdm5	71	48.515
ENSXCOG00000009186	-	90	49.550	ENSXCOG00000001226	-	86	49.550
ENSXCOG00000009186	-	89	40.741	ENSXCOG00000009768	-	81	40.741
ENSXCOG00000009186	-	91	47.748	ENSXCOG00000017871	zgc:113343	63	47.748
ENSXCOG00000009186	-	90	47.500	ENSXCOG00000009597	ZNF319	81	47.500
ENSXCOG00000009186	-	89	44.444	ENSXCOG00000018315	-	92	44.444
ENSXCOG00000009186	-	99	45.045	ENSXCOG00000007957	-	95	47.126
ENSXCOG00000009186	-	100	45.745	ENSXCOG00000006614	-	91	45.192
ENSXCOG00000009186	-	89	45.045	ENSXCOG00000014363	-	60	45.045
ENSXCOG00000009186	-	94	46.602	ENSXCOG00000014361	-	55	46.602
ENSXCOG00000009186	-	90	48.544	ENSXCOG00000007368	-	92	48.544
ENSXCOG00000009186	-	87	41.463	ENSXCOG00000018615	-	84	41.463
ENSXCOG00000009186	-	97	55.172	ENSXCOG00000019443	-	96	55.172
ENSXCOG00000009186	-	95	48.718	ENSXCOG00000009665	-	81	48.718
ENSXCOG00000009186	-	91	46.429	ENSXCOG00000003093	-	82	46.429
ENSXCOG00000009186	-	93	45.763	ENSXCOG00000009794	-	80	45.763
ENSXCOG00000009186	-	90	38.318	ENSXCOG00000008003	-	53	38.318
ENSXCOG00000009186	-	92	48.544	ENSXCOG00000003896	-	63	48.544
ENSXCOG00000009186	-	91	40.541	ENSXCOG00000009785	-	62	40.541
ENSXCOG00000009186	-	82	41.748	ENSXCOG00000009781	-	69	41.748
ENSXCOG00000009186	-	90	49.123	ENSXCOG00000008978	-	98	49.123
ENSXCOG00000009186	-	99	47.727	ENSXCOG00000007994	-	88	45.946
ENSXCOG00000009186	-	98	44.660	ENSXCOG00000008083	-	90	46.753
ENSXCOG00000009186	-	89	44.304	ENSXCOG00000007413	-	65	44.304
ENSXCOG00000009186	-	96	45.045	ENSXCOG00000007414	-	95	45.045
ENSXCOG00000009186	-	89	49.550	ENSXCOG00000015441	-	85	49.550
ENSXCOG00000009186	-	100	47.917	ENSXCOG00000016307	-	84	47.917
ENSXCOG00000009186	-	89	45.882	ENSXCOG00000003499	-	52	45.882
ENSXCOG00000009186	-	97	37.037	ENSXCOG00000007499	zbtb41	62	37.037
ENSXCOG00000009186	-	92	41.905	ENSXCOG00000019675	scrt1b	50	41.905
ENSXCOG00000009186	-	99	49.153	ENSXCOG00000001200	-	92	49.153
ENSXCOG00000009186	-	82	49.515	ENSXCOG00000010488	-	55	49.515
ENSXCOG00000009186	-	92	45.536	ENSXCOG00000015947	-	91	45.536
ENSXCOG00000009186	-	99	44.554	ENSXCOG00000002857	-	92	43.243
ENSXCOG00000009186	-	90	46.809	ENSXCOG00000016860	-	97	46.429
ENSXCOG00000009186	-	88	50.909	ENSXCOG00000007420	-	97	50.909
ENSXCOG00000009186	-	96	44.706	ENSXCOG00000001116	-	91	44.706
ENSXCOG00000009186	-	100	43.902	ENSXCOG00000009997	-	50	43.902
ENSXCOG00000009186	-	99	47.748	ENSXCOG00000007945	-	91	47.748
ENSXCOG00000009186	-	93	42.308	ENSXCOG00000003441	-	56	42.308
ENSXCOG00000009186	-	89	41.975	ENSXCOG00000020769	-	76	41.975
ENSXCOG00000009186	-	89	40.777	ENSXCOG00000020768	-	82	40.777
ENSXCOG00000009186	-	99	50.000	ENSXCOG00000007376	-	94	50.000
ENSXCOG00000009186	-	98	48.571	ENSXCOG00000012924	-	91	48.571
ENSXCOG00000009186	-	93	39.216	ENSXCOG00000009777	-	55	39.216
ENSXCOG00000009186	-	85	41.748	ENSXCOG00000009772	-	81	41.748
ENSXCOG00000009186	-	89	47.115	ENSXCOG00000010950	si:dkey-210j14.3	54	47.115
ENSXCOG00000009186	-	94	46.847	ENSXCOG00000012458	-	59	46.847
ENSXCOG00000009186	-	87	42.169	ENSXCOG00000009674	-	73	42.169
ENSXCOG00000009186	-	90	42.308	ENSXCOG00000009992	zbtb47b	68	42.308
ENSXCOG00000009186	-	87	44.898	ENSXCOG00000015428	-	75	44.898
ENSXCOG00000009186	-	89	45.631	ENSXCOG00000010259	-	55	45.631
ENSXCOG00000009186	-	89	47.273	ENSXCOG00000018253	-	92	47.273
ENSXCOG00000009186	-	93	49.515	ENSXCOG00000003472	-	82	49.515
ENSXCOG00000009186	-	90	46.970	ENSXCOG00000019481	-	91	46.970
ENSXCOG00000009186	-	91	50.000	ENSXCOG00000019482	-	85	50.000
ENSXCOG00000009186	-	82	47.273	ENSXCOG00000016589	-	96	47.273
ENSXCOG00000009186	-	92	38.655	ENSXCOG00000003001	-	87	38.655
ENSXCOG00000009186	-	89	50.000	ENSXCOG00000008116	-	87	45.946
ENSXCOG00000009186	-	89	46.667	ENSXCOG00000007937	-	75	46.667
ENSXCOG00000009186	-	91	44.186	ENSXCOG00000019457	-	85	43.689
ENSXCOG00000009186	-	93	45.192	ENSXCOG00000007076	-	99	45.192
ENSXCOG00000009186	-	82	48.214	ENSXCOG00000015435	-	82	48.214
ENSXCOG00000009186	-	89	49.515	ENSXCOG00000003532	-	77	49.515
ENSXCOG00000009186	-	100	45.833	ENSXCOG00000003530	-	76	45.833
ENSXCOG00000009186	-	92	48.544	ENSXCOG00000003538	-	100	48.544
ENSXCOG00000009186	-	96	51.456	ENSXCOG00000009003	-	93	51.456
ENSXCOG00000009186	-	98	46.667	ENSXCOG00000009798	-	68	46.667
ENSXCOG00000009186	-	89	50.000	ENSXCOG00000007406	-	97	45.745
ENSXCOG00000009186	-	89	50.000	ENSXCOG00000019377	-	96	50.000
ENSXCOG00000009186	-	95	42.857	ENSXCOG00000013870	-	76	42.857
ENSXCOG00000009186	-	90	67.857	ENSXCOG00000000354	-	70	67.857
ENSXCOG00000009186	-	90	46.535	ENSXCOG00000003484	-	60	46.535
ENSXCOG00000009186	-	99	47.126	ENSXCOG00000019484	-	88	43.689
ENSXCOG00000009186	-	92	48.780	ENSXCOG00000013066	-	75	48.780
ENSXCOG00000009186	-	88	44.860	ENSXCOG00000009668	-	68	44.860
ENSXCOG00000009186	-	99	43.810	ENSXCOG00000018117	znf710b	50	42.453
ENSXCOG00000009186	-	98	48.235	ENSXCOG00000007529	-	97	44.660
ENSXCOG00000009186	-	97	47.525	ENSXCOG00000019401	-	87	47.525
ENSXCOG00000009186	-	89	47.748	ENSXCOG00000002473	-	88	47.748
ENSXCOG00000009186	-	89	43.373	ENSXCOG00000000254	-	60	43.373
ENSXCOG00000009186	-	100	43.689	ENSXCOG00000019492	-	93	45.652
ENSXCOG00000009186	-	90	43.119	ENSXCOG00000015312	-	85	43.119
ENSXCOG00000009186	-	90	47.727	ENSXCOG00000003451	-	88	46.667
ENSXCOG00000009186	-	100	50.000	ENSXCOG00000010567	-	88	45.872
ENSXCOG00000009186	-	98	41.441	ENSXCOG00000007987	-	75	41.441
ENSXCOG00000009186	-	90	52.632	ENSXCOG00000000528	-	78	52.632
ENSXCOG00000009186	-	90	41.071	ENSXCOG00000003438	-	53	41.071
ENSXCOG00000009186	-	91	47.059	ENSXCOG00000019382	-	77	47.059
ENSXCOG00000009186	-	95	47.788	ENSXCOG00000002869	-	56	47.788
ENSXCOG00000009186	-	93	43.564	ENSXCOG00000013306	-	56	43.564
ENSXCOG00000009186	-	90	51.282	ENSXCOG00000016567	-	71	51.282
ENSXCOG00000009186	-	99	51.064	ENSXCOG00000007396	-	84	51.064
ENSXCOG00000009186	-	99	44.660	ENSXCOG00000007139	-	69	44.660
ENSXCOG00000009186	-	100	44.660	ENSXCOG00000011725	-	96	44.660
ENSXCOG00000009186	-	100	48.000	ENSXCOG00000007981	-	87	46.535
ENSXCOG00000009186	-	81	40.217	ENSXCOG00000011372	-	59	40.217
ENSXCOG00000009186	-	97	56.863	ENSXCOG00000003468	-	79	56.863
ENSXCOG00000009186	-	89	50.794	ENSXCOG00000007941	-	83	50.794
ENSXCOG00000009186	-	88	41.463	ENSXCOG00000003493	-	62	41.463

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSXCOG00000009186	-	90	92.857	ENSAMEG00000013858	-	88	92.857	Ailuropoda_melanoleuca
ENSXCOG00000009186	-	92	70.588	ENSACIG00000002180	-	99	70.588	Amphilophus_citrinellus
ENSXCOG00000009186	-	90	92.857	ENSAPLG00000015700	GFI1	50	92.857	Anas_platyrhynchos
ENSXCOG00000009186	-	94	77.119	ENSACLG00000001258	-	91	77.119	Astatotilapia_calliptera
ENSXCOG00000009186	-	89	89.189	ENSAMXG00000006669	GFI1	54	89.189	Astyanax_mexicanus
ENSXCOG00000009186	-	86	83.178	ENSAMXG00000015228	-	51	83.178	Astyanax_mexicanus
ENSXCOG00000009186	-	90	92.857	ENSCAPG00000016268	-	100	92.857	Cavia_aperea
ENSXCOG00000009186	-	90	92.857	ENSCPBG00000015742	-	83	92.857	Chrysemys_picta_bellii
ENSXCOG00000009186	-	95	82.727	ENSCING00000011342	-	90	82.727	Ciona_intestinalis
ENSXCOG00000009186	-	89	82.883	ENSCSAVG00000005904	-	87	82.883	Ciona_savignyi
ENSXCOG00000009186	-	90	92.857	ENSCGRG00000013485	-	83	92.857	Cricetulus_griseus_crigri
ENSXCOG00000009186	-	90	92.857	ENSDORG00000023443	-	83	92.857	Dipodomys_ordii
ENSXCOG00000009186	-	89	85.586	ENSEBUG00000008075	gfi1ab	57	85.586	Eptatretus_burgeri
ENSXCOG00000009186	-	90	92.857	ENSFDAG00000019296	-	83	92.857	Fukomys_damarensis
ENSXCOG00000009186	-	90	92.857	ENSGAGG00000015899	GFI1	83	92.857	Gopherus_agassizii
ENSXCOG00000009186	-	90	91.964	ENSHCOG00000019555	GFI1	52	91.964	Hippocampus_comes
ENSXCOG00000009186	-	86	81.308	ENSIPUG00000021407	-	52	81.308	Ictalurus_punctatus
ENSXCOG00000009186	-	90	92.857	ENSJJAG00000022622	-	100	92.857	Jaculus_jaculus
ENSXCOG00000009186	-	86	90.654	ENSLACG00000017590	-	51	90.654	Latimeria_chalumnae
ENSXCOG00000009186	-	90	92.857	ENSMMUG00000005068	GFI1	83	92.857	Macaca_mulatta
ENSXCOG00000009186	-	90	92.857	ENSMGAG00000008187	GFI1	50	92.857	Meleagris_gallopavo
ENSXCOG00000009186	-	90	92.857	ENSMAUG00000021273	-	83	92.857	Mesocricetus_auratus
ENSXCOG00000009186	-	90	92.857	ENSMOCG00000004478	-	83	92.857	Microtus_ochrogaster
ENSXCOG00000009186	-	90	92.857	MGP_CAROLIEiJ_G0027508	Gfi1	83	92.857	Mus_caroli
ENSXCOG00000009186	-	90	92.857	MGP_PahariEiJ_G0017280	Gfi1	83	92.857	Mus_pahari
ENSXCOG00000009186	-	90	92.857	ENSNGAG00000002549	-	83	92.857	Nannospalax_galili
ENSXCOG00000009186	-	90	74.359	ENSNBRG00000001834	-	92	74.359	Neolamprologus_brichardi
ENSXCOG00000009186	-	93	76.068	ENSNBRG00000010351	-	91	76.068	Neolamprologus_brichardi
ENSXCOG00000009186	-	90	92.857	ENSODEG00000006410	-	83	92.857	Octodon_degus
ENSXCOG00000009186	-	90	91.964	ENSOANG00000022289	-	77	91.964	Ornithorhynchus_anatinus
ENSXCOG00000009186	-	90	91.964	ENSORLG00020002817	GFI1	52	91.964	Oryzias_latipes_hni
ENSXCOG00000009186	-	100	85.600	ENSPTIG00000002680	-	92	85.600	Panthera_tigris_altaica
ENSXCOG00000009186	-	87	93.578	ENSPMGG00000011041	GFI1	55	93.578	Periophthalmus_magnuspinnatus
ENSXCOG00000009186	-	90	91.964	ENSPLAG00000010879	gfi1ab	52	91.964	Poecilia_latipinna
ENSXCOG00000009186	-	88	80.000	ENSPNYG00000001775	-	88	80.000	Pundamilia_nyererei
ENSXCOG00000009186	-	86	82.243	ENSPNAG00000014299	-	54	82.243	Pygocentrus_nattereri
ENSXCOG00000009186	-	83	87.500	ENSSFOG00015008114	-	51	84.906	Scleropages_formosus
ENSXCOG00000009186	-	86	79.439	ENSSLDG00000017614	-	80	79.439	Seriola_lalandi_dorsalis
ENSXCOG00000009186	-	90	91.964	ENSSPAG00000009140	gfi1ab	54	91.964	Stegastes_partitus
ENSXCOG00000009186	-	90	92.857	ENSTGUG00000006060	GFI1	51	92.857	Taeniopygia_guttata
ENSXCOG00000009186	-	90	92.857	ENSUMAG00000011251	-	83	92.857	Ursus_maritimus