EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSXCOG00000009209 (Gene tree)
Gene ID: -
Gene Symbol: si:ch73-63e15.2
Alias: si:dkey-19f23.4
Full Name: strawberry notch homolog 2
Gene Type: protein_coding
Species: Xiphophorus_couchianus
Status: putative
Strand: Minus strand
Length: 53935 bases
Position: chrKQ557224.1:8930947-8984881
Accession: 29158
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSXCOP00000012175	ResIII	PF04851.15	2.1e-08	1	1
ENSXCOP00000012173	ResIII	PF04851.15	3.1e-08	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSXCOT00000012316	-	2961	-	ENSXCOP00000012175	986 (aa)	-	-
ENSXCOT00000012314	-	4125	-	ENSXCOP00000012173	1374 (aa)	-	-

Gene Model

Click here to download ENSXCOG00000009209's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSXCOG00000009209's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSXCOG00000009209	si:ch73-63e15.2	78	64.626	ENSXCOG00000011607	sbno1	67	62.651

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSXCOG00000009209	si:ch73-63e15.2	89	71.522	ENSG00000064932	SBNO2	73	69.866	Homo_sapiens
ENSXCOG00000009209	si:ch73-63e15.2	94	90.097	ENSAPOG00000003185	si:ch73-63e15.2	83	90.097	Acanthochromis_polyacanthus
ENSXCOG00000009209	si:ch73-63e15.2	94	90.397	ENSAOCG00000016581	si:ch73-63e15.2	99	84.478	Amphiprion_ocellaris
ENSXCOG00000009209	si:ch73-63e15.2	94	90.508	ENSAPEG00000008862	si:ch73-63e15.2	89	87.979	Amphiprion_percula
ENSXCOG00000009209	si:ch73-63e15.2	93	91.458	ENSATEG00000023838	si:ch73-63e15.2	95	87.751	Anabas_testudineus
ENSXCOG00000009209	si:ch73-63e15.2	91	72.737	ENSAPLG00000007158	SBNO2	75	72.633	Anas_platyrhynchos
ENSXCOG00000009209	si:ch73-63e15.2	84	74.031	ENSANAG00000026685	SBNO2	73	69.729	Aotus_nancymaae
ENSXCOG00000009209	si:ch73-63e15.2	94	89.749	ENSACLG00000005090	si:ch73-63e15.2	83	87.284	Astatotilapia_calliptera
ENSXCOG00000009209	si:ch73-63e15.2	91	82.340	ENSAMXG00000015881	si:ch73-63e15.2	72	81.250	Astyanax_mexicanus
ENSXCOG00000009209	si:ch73-63e15.2	94	77.131	ENSAMXG00000018868	sbno2a	99	77.031	Astyanax_mexicanus
ENSXCOG00000009209	si:ch73-63e15.2	91	70.308	ENSBTAG00000020780	SBNO2	74	70.010	Bos_taurus
ENSXCOG00000009209	si:ch73-63e15.2	91	70.732	ENSCAFG00000019543	SBNO2	69	70.877	Canis_familiaris
ENSXCOG00000009209	si:ch73-63e15.2	91	70.732	ENSCAFG00020017115	SBNO2	73	70.877	Canis_lupus_dingo
ENSXCOG00000009209	si:ch73-63e15.2	91	70.308	ENSCHIG00000026127	SBNO2	71	70.681	Capra_hircus
ENSXCOG00000009209	si:ch73-63e15.2	91	68.856	ENSCAPG00000005731	SBNO2	78	69.223	Cavia_aperea
ENSXCOG00000009209	si:ch73-63e15.2	91	68.856	ENSCPOG00000007477	SBNO2	71	69.538	Cavia_porcellus
ENSXCOG00000009209	si:ch73-63e15.2	89	72.031	ENSCCAG00000037518	SBNO2	73	69.969	Cebus_capucinus
ENSXCOG00000009209	si:ch73-63e15.2	89	71.772	ENSCATG00000037046	SBNO2	72	70.428	Cercocebus_atys
ENSXCOG00000009209	si:ch73-63e15.2	91	69.968	ENSCLAG00000010178	SBNO2	83	69.444	Chinchilla_lanigera
ENSXCOG00000009209	si:ch73-63e15.2	89	71.772	ENSCSAG00000012317	SBNO2	70	70.186	Chlorocebus_sabaeus
ENSXCOG00000009209	si:ch73-63e15.2	91	74.461	ENSCPBG00000008920	SBNO2	71	84.507	Chrysemys_picta_bellii
ENSXCOG00000009209	si:ch73-63e15.2	89	71.273	ENSCANG00000036745	SBNO2	83	70.177	Colobus_angolensis_palliatus
ENSXCOG00000009209	si:ch73-63e15.2	80	74.079	ENSCGRG00001023960	Sbno2	68	70.185	Cricetulus_griseus_chok1gshd
ENSXCOG00000009209	si:ch73-63e15.2	84	73.877	ENSCGRG00000011984	Sbno2	70	70.137	Cricetulus_griseus_crigri
ENSXCOG00000009209	si:ch73-63e15.2	86	90.544	ENSCSEG00000006856	si:ch73-63e15.2	82	89.747	Cynoglossus_semilaevis
ENSXCOG00000009209	si:ch73-63e15.2	94	91.731	ENSCVAG00000005663	si:ch73-63e15.2	88	89.800	Cyprinodon_variegatus
ENSXCOG00000009209	si:ch73-63e15.2	94	79.581	ENSDARG00000016188	SBNO2	75	80.021	Danio_rerio
ENSXCOG00000009209	si:ch73-63e15.2	84	85.921	ENSDARG00000098801	sbno2a	74	78.413	Danio_rerio
ENSXCOG00000009209	si:ch73-63e15.2	91	70.201	ENSDORG00000002916	Sbno2	71	71.072	Dipodomys_ordii
ENSXCOG00000009209	si:ch73-63e15.2	91	70.701	ENSEASG00005021621	SBNO2	74	69.654	Equus_asinus_asinus
ENSXCOG00000009209	si:ch73-63e15.2	91	70.488	ENSECAG00000011827	SBNO2	74	69.654	Equus_caballus
ENSXCOG00000009209	si:ch73-63e15.2	93	85.545	ENSELUG00000020457	si:ch73-63e15.2	86	85.503	Esox_lucius
ENSXCOG00000009209	si:ch73-63e15.2	91	71.865	ENSFALG00000013988	SBNO2	70	71.680	Ficedula_albicollis
ENSXCOG00000009209	si:ch73-63e15.2	89	68.484	ENSFDAG00000015186	SBNO2	74	66.226	Fukomys_damarensis
ENSXCOG00000009209	si:ch73-63e15.2	94	93.275	ENSFHEG00000022262	si:ch73-63e15.2	88	91.062	Fundulus_heteroclitus
ENSXCOG00000009209	si:ch73-63e15.2	91	84.766	ENSGMOG00000007542	si:ch73-63e15.2	82	84.525	Gadus_morhua
ENSXCOG00000009209	si:ch73-63e15.2	91	72.947	ENSGALG00000037522	SBNO2	71	72.251	Gallus_gallus
ENSXCOG00000009209	si:ch73-63e15.2	94	95.369	ENSGAFG00000004860	si:ch73-63e15.2	78	93.968	Gambusia_affinis
ENSXCOG00000009209	si:ch73-63e15.2	87	90.794	ENSGACG00000013190	si:ch73-63e15.2	82	85.939	Gasterosteus_aculeatus
ENSXCOG00000009209	si:ch73-63e15.2	91	74.544	ENSGAGG00000008348	SBNO2	72	73.402	Gopherus_agassizii
ENSXCOG00000009209	si:ch73-63e15.2	94	89.863	ENSHBUG00000010742	si:ch73-63e15.2	87	85.850	Haplochromis_burtoni
ENSXCOG00000009209	si:ch73-63e15.2	91	68.856	ENSHGLG00000008739	SBNO2	70	70.021	Heterocephalus_glaber_female
ENSXCOG00000009209	si:ch73-63e15.2	91	68.962	ENSHGLG00100005269	SBNO2	83	69.008	Heterocephalus_glaber_male
ENSXCOG00000009209	si:ch73-63e15.2	89	90.444	ENSHCOG00000000884	si:ch73-63e15.2	77	86.760	Hippocampus_comes
ENSXCOG00000009209	si:ch73-63e15.2	88	85.763	ENSIPUG00000019672	sbno2	93	81.654	Ictalurus_punctatus
ENSXCOG00000009209	si:ch73-63e15.2	94	76.673	ENSIPUG00000000537	si:ch73-63e15.2	71	79.787	Ictalurus_punctatus
ENSXCOG00000009209	si:ch73-63e15.2	89	70.992	ENSSTOG00000025832	SBNO2	71	69.011	Ictidomys_tridecemlineatus
ENSXCOG00000009209	si:ch73-63e15.2	91	65.429	ENSJJAG00000017397	Sbno2	71	67.011	Jaculus_jaculus
ENSXCOG00000009209	si:ch73-63e15.2	94	89.967	ENSKMAG00000005541	si:ch73-63e15.2	88	87.987	Kryptolebias_marmoratus
ENSXCOG00000009209	si:ch73-63e15.2	95	87.658	ENSLBEG00000025016	si:ch73-63e15.2	99	87.252	Labrus_bergylta
ENSXCOG00000009209	si:ch73-63e15.2	60	80.472	ENSLBEG00000005937	-	100	79.358	Labrus_bergylta
ENSXCOG00000009209	si:ch73-63e15.2	52	78.058	ENSLACG00000012598	SBNO2	99	71.173	Latimeria_chalumnae
ENSXCOG00000009209	si:ch73-63e15.2	89	85.459	ENSLOCG00000004643	si:ch73-63e15.2	73	83.439	Lepisosteus_oculatus
ENSXCOG00000009209	si:ch73-63e15.2	89	69.475	ENSLAFG00000008824	SBNO2	83	64.632	Loxodonta_africana
ENSXCOG00000009209	si:ch73-63e15.2	89	69.989	ENSMFAG00000040030	SBNO2	74	68.724	Macaca_fascicularis
ENSXCOG00000009209	si:ch73-63e15.2	89	71.772	ENSMMUG00000010886	SBNO2	73	68.724	Macaca_mulatta
ENSXCOG00000009209	si:ch73-63e15.2	89	71.772	ENSMNEG00000039927	SBNO2	73	70.428	Macaca_nemestrina
ENSXCOG00000009209	si:ch73-63e15.2	89	71.772	ENSMLEG00000038556	SBNO2	82	70.186	Mandrillus_leucophaeus
ENSXCOG00000009209	si:ch73-63e15.2	93	91.458	ENSMAMG00000018758	si:ch73-63e15.2	89	86.515	Mastacembelus_armatus
ENSXCOG00000009209	si:ch73-63e15.2	94	89.749	ENSMZEG00005010682	si:ch73-63e15.2	83	87.284	Maylandia_zebra
ENSXCOG00000009209	si:ch73-63e15.2	89	73.564	ENSMGAG00000003801	SBNO2	75	71.590	Meleagris_gallopavo
ENSXCOG00000009209	si:ch73-63e15.2	84	73.995	ENSMAUG00000008034	Sbno2	70	70.588	Mesocricetus_auratus
ENSXCOG00000009209	si:ch73-63e15.2	91	70.170	ENSMICG00000013071	SBNO2	73	70.607	Microcebus_murinus
ENSXCOG00000009209	si:ch73-63e15.2	84	74.083	ENSMOCG00000010504	Sbno2	70	70.211	Microtus_ochrogaster
ENSXCOG00000009209	si:ch73-63e15.2	89	73.875	ENSMODG00000005382	SBNO2	68	72.555	Monodelphis_domestica
ENSXCOG00000009209	si:ch73-63e15.2	94	80.672	ENSMALG00000021831	si:ch73-63e15.2	99	80.672	Monopterus_albus
ENSXCOG00000009209	si:ch73-63e15.2	91	68.969	ENSMUSG00000035673	Sbno2	77	70.063	Mus_musculus
ENSXCOG00000009209	si:ch73-63e15.2	91	69.002	MGP_PahariEiJ_G0030976	Sbno2	70	70.242	Mus_pahari
ENSXCOG00000009209	si:ch73-63e15.2	91	69.108	MGP_SPRETEiJ_G0016381	Sbno2	75	70.242	Mus_spretus
ENSXCOG00000009209	si:ch73-63e15.2	91	70.701	ENSMPUG00000008747	SBNO2	88	70.521	Mustela_putorius_furo
ENSXCOG00000009209	si:ch73-63e15.2	94	67.629	ENSNGAG00000004308	Sbno2	72	69.958	Nannospalax_galili
ENSXCOG00000009209	si:ch73-63e15.2	94	86.378	ENSNBRG00000022968	si:ch73-63e15.2	99	86.378	Neolamprologus_brichardi
ENSXCOG00000009209	si:ch73-63e15.2	80	78.541	ENSNLEG00000001305	SBNO2	67	78.541	Nomascus_leucogenys
ENSXCOG00000009209	si:ch73-63e15.2	77	67.692	ENSMEUG00000013511	-	64	67.692	Notamacropus_eugenii
ENSXCOG00000009209	si:ch73-63e15.2	89	71.209	ENSOPRG00000017238	SBNO2	78	70.211	Ochotona_princeps
ENSXCOG00000009209	si:ch73-63e15.2	91	68.432	ENSODEG00000011822	SBNO2	71	67.662	Octodon_degus
ENSXCOG00000009209	si:ch73-63e15.2	94	88.679	ENSONIG00000002490	si:ch73-63e15.2	83	86.484	Oreochromis_niloticus
ENSXCOG00000009209	si:ch73-63e15.2	94	87.789	ENSORLG00000000913	si:ch73-63e15.2	89	87.789	Oryzias_latipes
ENSXCOG00000009209	si:ch73-63e15.2	94	88.687	ENSORLG00020010978	si:ch73-63e15.2	89	86.646	Oryzias_latipes_hni
ENSXCOG00000009209	si:ch73-63e15.2	94	87.789	ENSORLG00015000202	si:ch73-63e15.2	89	87.789	Oryzias_latipes_hsok
ENSXCOG00000009209	si:ch73-63e15.2	94	89.410	ENSOMEG00000000359	si:ch73-63e15.2	83	88.687	Oryzias_melastigma
ENSXCOG00000009209	si:ch73-63e15.2	91	68.929	ENSOARG00000011130	SBNO2	73	69.080	Ovis_aries
ENSXCOG00000009209	si:ch73-63e15.2	89	71.303	ENSPPAG00000032482	SBNO2	75	69.763	Pan_paniscus
ENSXCOG00000009209	si:ch73-63e15.2	89	71.413	ENSPTRG00000010185	SBNO2	73	70.186	Pan_troglodytes
ENSXCOG00000009209	si:ch73-63e15.2	89	67.396	ENSPANG00000009658	SBNO2	71	67.687	Papio_anubis
ENSXCOG00000009209	si:ch73-63e15.2	91	84.004	ENSPKIG00000024201	si:ch73-63e15.2	74	82.909	Paramormyrops_kingsleyae
ENSXCOG00000009209	si:ch73-63e15.2	94	75.805	ENSPKIG00000009707	-	80	75.805	Paramormyrops_kingsleyae
ENSXCOG00000009209	si:ch73-63e15.2	91	71.773	ENSPSIG00000002852	SBNO2	98	72.066	Pelodiscus_sinensis
ENSXCOG00000009209	si:ch73-63e15.2	94	83.299	ENSPMGG00000014375	si:ch73-63e15.2	79	87.188	Periophthalmus_magnuspinnatus
ENSXCOG00000009209	si:ch73-63e15.2	91	67.807	ENSPEMG00000024122	Sbno2	71	66.874	Peromyscus_maniculatus_bairdii
ENSXCOG00000009209	si:ch73-63e15.2	89	74.860	ENSPCIG00000011264	SBNO2	68	72.660	Phascolarctos_cinereus
ENSXCOG00000009209	si:ch73-63e15.2	94	93.875	ENSPFOG00000004096	si:ch73-63e15.2	85	95.440	Poecilia_formosa
ENSXCOG00000009209	si:ch73-63e15.2	94	93.968	ENSPLAG00000014653	si:ch73-63e15.2	88	93.968	Poecilia_latipinna
ENSXCOG00000009209	si:ch73-63e15.2	94	95.371	ENSPMEG00000002129	si:ch73-63e15.2	100	90.175	Poecilia_mexicana
ENSXCOG00000009209	si:ch73-63e15.2	94	93.770	ENSPREG00000006755	si:ch73-63e15.2	83	93.770	Poecilia_reticulata
ENSXCOG00000009209	si:ch73-63e15.2	83	72.315	ENSPCAG00000012256	SBNO2	62	72.315	Procavia_capensis
ENSXCOG00000009209	si:ch73-63e15.2	91	63.347	ENSPCOG00000015216	SBNO2	72	63.703	Propithecus_coquereli
ENSXCOG00000009209	si:ch73-63e15.2	94	89.749	ENSPNYG00000019926	si:ch73-63e15.2	88	84.751	Pundamilia_nyererei
ENSXCOG00000009209	si:ch73-63e15.2	94	81.867	ENSPNAG00000020260	si:ch73-63e15.2	72	81.780	Pygocentrus_nattereri
ENSXCOG00000009209	si:ch73-63e15.2	91	82.694	ENSPNAG00000026609	sbno2a	83	80.838	Pygocentrus_nattereri
ENSXCOG00000009209	si:ch73-63e15.2	91	69.108	ENSRNOG00000013987	Sbno2	74	70.347	Rattus_norvegicus
ENSXCOG00000009209	si:ch73-63e15.2	89	70.627	ENSRBIG00000009740	SBNO2	78	68.947	Rhinopithecus_bieti
ENSXCOG00000009209	si:ch73-63e15.2	74	72.798	ENSRROG00000044671	SBNO2	68	71.166	Rhinopithecus_roxellana
ENSXCOG00000009209	si:ch73-63e15.2	89	71.920	ENSSBOG00000023562	SBNO2	73	70.115	Saimiri_boliviensis_boliviensis
ENSXCOG00000009209	si:ch73-63e15.2	89	73.742	ENSSHAG00000010241	SBNO2	82	72.117	Sarcophilus_harrisii
ENSXCOG00000009209	si:ch73-63e15.2	89	84.746	ENSSFOG00015005861	si:ch73-63e15.2	81	81.290	Scleropages_formosus
ENSXCOG00000009209	si:ch73-63e15.2	94	89.503	ENSSMAG00000012489	si:ch73-63e15.2	89	86.604	Scophthalmus_maximus
ENSXCOG00000009209	si:ch73-63e15.2	94	89.547	ENSSDUG00000003527	si:ch73-63e15.2	89	87.241	Seriola_dumerili
ENSXCOG00000009209	si:ch73-63e15.2	94	89.547	ENSSLDG00000004623	si:ch73-63e15.2	89	87.241	Seriola_lalandi_dorsalis
ENSXCOG00000009209	si:ch73-63e15.2	91	90.276	ENSSPAG00000017717	si:ch73-63e15.2	88	89.807	Stegastes_partitus
ENSXCOG00000009209	si:ch73-63e15.2	91	70.626	ENSSSCG00000030042	SBNO2	74	70.217	Sus_scrofa
ENSXCOG00000009209	si:ch73-63e15.2	91	87.473	ENSTRUG00000018193	si:ch73-63e15.2	73	88.432	Takifugu_rubripes
ENSXCOG00000009209	si:ch73-63e15.2	53	91.923	ENSTNIG00000000856	si:ch73-63e15.2	99	91.923	Tetraodon_nigroviridis
ENSXCOG00000009209	si:ch73-63e15.2	91	70.807	ENSUAMG00000006568	SBNO2	87	78.604	Ursus_americanus
ENSXCOG00000009209	si:ch73-63e15.2	91	70.838	ENSVVUG00000022823	SBNO2	69	70.332	Vulpes_vulpes
ENSXCOG00000009209	si:ch73-63e15.2	84	76.566	ENSXETG00000021579	sbno2	73	76.566	Xenopus_tropicalis
ENSXCOG00000009209	si:ch73-63e15.2	94	97.561	ENSXMAG00000012091	si:ch73-63e15.2	88	97.561	Xiphophorus_maculatus