EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: ENSXCOG00000009635 (Gene tree)
Gene ID: -
Gene Symbol: tsr1
Alias: fc52b09|wu:fc52b09|zgc:123319
Full Name: TSR1%2C 20S rRNA accumulation%2C homolog (S. cerevisiae)
Gene Type: protein_coding
Species: Xiphophorus_couchianus
Status: putative
Strand: Plus strand
Length: 12719 bases
Position: chrKQ557210.1:29153393-29166111
Accession: ZDB-GENE-030131-3762
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSXCOP00000012757	AARP2CN	PF08142.12	7.2e-21	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSXCOT00000012911	-	2463	-	ENSXCOP00000012757	820 (aa)	-	-

Gene Model

Click here to download ENSXCOG00000009635's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSXCOG00000009635's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSXCOG00000009635	tsr1	99	54.945	ENSG00000167721	TSR1	99	54.701	Homo_sapiens
ENSXCOG00000009635	tsr1	100	83.771	ENSAPOG00000020891	tsr1	100	84.450	Acanthochromis_polyacanthus
ENSXCOG00000009635	tsr1	99	54.369	ENSAMEG00000007599	TSR1	99	53.762	Ailuropoda_melanoleuca
ENSXCOG00000009635	tsr1	100	82.439	ENSACIG00000007090	tsr1	100	82.805	Amphilophus_citrinellus
ENSXCOG00000009635	tsr1	100	83.573	ENSAOCG00000023284	tsr1	100	84.255	Amphiprion_ocellaris
ENSXCOG00000009635	tsr1	93	83.526	ENSAPEG00000008452	tsr1	100	84.258	Amphiprion_percula
ENSXCOG00000009635	tsr1	100	81.481	ENSATEG00000021961	tsr1	100	82.437	Anabas_testudineus
ENSXCOG00000009635	tsr1	90	59.134	ENSAPLG00000013422	TSR1	98	58.895	Anas_platyrhynchos
ENSXCOG00000009635	tsr1	71	50.678	ENSACAG00000000859	TSR1	92	50.588	Anolis_carolinensis
ENSXCOG00000009635	tsr1	99	55.392	ENSANAG00000031071	TSR1	99	55.143	Aotus_nancymaae
ENSXCOG00000009635	tsr1	100	83.836	ENSACLG00000007595	tsr1	99	83.595	Astatotilapia_calliptera
ENSXCOG00000009635	tsr1	51	72.727	ENSAMXG00000008470	tsr1	89	72.554	Astyanax_mexicanus
ENSXCOG00000009635	tsr1	99	55.746	ENSBTAG00000004225	TSR1	99	55.623	Bos_taurus
ENSXCOG00000009635	tsr1	96	40.150	WBGene00006497	tag-151	96	40.325	Caenorhabditis_elegans
ENSXCOG00000009635	tsr1	99	54.412	ENSCJAG00000012456	TSR1	99	53.799	Callithrix_jacchus
ENSXCOG00000009635	tsr1	99	55.324	ENSCAFG00000002106	-	99	54.957	Canis_familiaris
ENSXCOG00000009635	tsr1	89	53.586	ENSCAFG00000019273	-	100	56.437	Canis_familiaris
ENSXCOG00000009635	tsr1	99	55.324	ENSCAFG00020009728	TSR1	99	54.957	Canis_lupus_dingo
ENSXCOG00000009635	tsr1	99	56.985	ENSCHIG00000023935	TSR1	99	56.373	Capra_hircus
ENSXCOG00000009635	tsr1	99	56.005	ENSTSYG00000005468	TSR1	99	55.311	Carlito_syrichta
ENSXCOG00000009635	tsr1	92	55.863	ENSCPOG00000014833	TSR1	99	55.468	Cavia_porcellus
ENSXCOG00000009635	tsr1	92	54.749	ENSCCAG00000028962	TSR1	98	54.090	Cebus_capucinus
ENSXCOG00000009635	tsr1	98	55.322	ENSCATG00000044262	TSR1	98	55.074	Cercocebus_atys
ENSXCOG00000009635	tsr1	99	55.882	ENSCLAG00000005567	TSR1	99	55.637	Chinchilla_lanigera
ENSXCOG00000009635	tsr1	98	55.446	ENSCSAG00000013788	TSR1	98	55.198	Chlorocebus_sabaeus
ENSXCOG00000009635	tsr1	98	55.966	ENSCPBG00000020363	TSR1	97	55.907	Chrysemys_picta_bellii
ENSXCOG00000009635	tsr1	96	45.533	ENSCING00000020658	-	99	45.217	Ciona_intestinalis
ENSXCOG00000009635	tsr1	96	44.750	ENSCSAVG00000001875	-	100	44.055	Ciona_savignyi
ENSXCOG00000009635	tsr1	98	52.599	ENSCANG00000033056	TSR1	98	52.228	Colobus_angolensis_palliatus
ENSXCOG00000009635	tsr1	99	54.335	ENSCGRG00001023942	Tsr1	99	54.258	Cricetulus_griseus_chok1gshd
ENSXCOG00000009635	tsr1	99	50.551	ENSCGRG00000013015	Tsr1	99	51.648	Cricetulus_griseus_crigri
ENSXCOG00000009635	tsr1	100	77.108	ENSCSEG00000013009	tsr1	100	77.349	Cynoglossus_semilaevis
ENSXCOG00000009635	tsr1	100	86.915	ENSCVAG00000000506	tsr1	100	87.500	Cyprinodon_variegatus
ENSXCOG00000009635	tsr1	99	73.035	ENSDARG00000007744	tsr1	99	73.462	Danio_rerio
ENSXCOG00000009635	tsr1	99	56.671	ENSDNOG00000004715	TSR1	99	57.389	Dasypus_novemcinctus
ENSXCOG00000009635	tsr1	96	49.365	ENSDORG00000023234	-	99	48.477	Dipodomys_ordii
ENSXCOG00000009635	tsr1	99	55.392	ENSDORG00000016371	-	99	54.579	Dipodomys_ordii
ENSXCOG00000009635	tsr1	96	43.788	FBgn0037073	Tsr1	96	43.580	Drosophila_melanogaster
ENSXCOG00000009635	tsr1	90	67.541	ENSETEG00000017534	TSR1	88	66.885	Echinops_telfairi
ENSXCOG00000009635	tsr1	94	52.107	ENSEBUG00000013731	TSR1	97	51.403	Eptatretus_burgeri
ENSXCOG00000009635	tsr1	99	56.740	ENSEASG00005009302	TSR1	97	56.005	Equus_asinus_asinus
ENSXCOG00000009635	tsr1	99	55.678	ENSECAG00000009114	TSR1	99	55.951	Equus_caballus
ENSXCOG00000009635	tsr1	100	73.923	ENSELUG00000020984	tsr1	96	74.371	Esox_lucius
ENSXCOG00000009635	tsr1	99	55.706	ENSFCAG00000006313	TSR1	99	55.337	Felis_catus
ENSXCOG00000009635	tsr1	99	58.659	ENSFALG00000006532	TSR1	99	58.659	Ficedula_albicollis
ENSXCOG00000009635	tsr1	99	55.460	ENSFDAG00000006038	TSR1	99	54.523	Fukomys_damarensis
ENSXCOG00000009635	tsr1	100	86.826	ENSFHEG00000003626	tsr1	99	87.799	Fundulus_heteroclitus
ENSXCOG00000009635	tsr1	100	71.879	ENSGMOG00000010336	tsr1	100	72.087	Gadus_morhua
ENSXCOG00000009635	tsr1	100	95.678	ENSGAFG00000012993	tsr1	99	95.678	Gambusia_affinis
ENSXCOG00000009635	tsr1	100	79.540	ENSGACG00000010843	tsr1	100	79.782	Gasterosteus_aculeatus
ENSXCOG00000009635	tsr1	98	56.350	ENSGAGG00000025619	-	99	55.556	Gopherus_agassizii
ENSXCOG00000009635	tsr1	99	55.067	ENSGGOG00000001704	TSR1	99	54.823	Gorilla_gorilla
ENSXCOG00000009635	tsr1	100	82.953	ENSHBUG00000017904	tsr1	100	83.097	Haplochromis_burtoni
ENSXCOG00000009635	tsr1	99	55.678	ENSHGLG00000012806	-	99	54.701	Heterocephalus_glaber_female
ENSXCOG00000009635	tsr1	96	48.923	ENSHGLG00000015688	-	99	48.232	Heterocephalus_glaber_female
ENSXCOG00000009635	tsr1	99	55.678	ENSHGLG00100015392	TSR1	99	54.701	Heterocephalus_glaber_male
ENSXCOG00000009635	tsr1	100	78.902	ENSHCOG00000001432	tsr1	100	79.024	Hippocampus_comes
ENSXCOG00000009635	tsr1	100	72.673	ENSIPUG00000004618	tsr1	100	72.554	Ictalurus_punctatus
ENSXCOG00000009635	tsr1	99	56.618	ENSSTOG00000011819	TSR1	99	56.005	Ictidomys_tridecemlineatus
ENSXCOG00000009635	tsr1	90	54.133	ENSJJAG00000019505	Tsr1	95	53.405	Jaculus_jaculus
ENSXCOG00000009635	tsr1	100	82.134	ENSKMAG00000005763	tsr1	99	83.534	Kryptolebias_marmoratus
ENSXCOG00000009635	tsr1	100	80.719	ENSLBEG00000021823	tsr1	99	81.317	Labrus_bergylta
ENSXCOG00000009635	tsr1	100	58.134	ENSLACG00000002197	TSR1	100	57.605	Latimeria_chalumnae
ENSXCOG00000009635	tsr1	90	74.667	ENSLOCG00000006491	TSR1	98	74.667	Lepisosteus_oculatus
ENSXCOG00000009635	tsr1	98	55.569	ENSMFAG00000021330	TSR1	98	55.322	Macaca_fascicularis
ENSXCOG00000009635	tsr1	98	55.446	ENSMMUG00000017519	TSR1	98	55.198	Macaca_mulatta
ENSXCOG00000009635	tsr1	98	55.569	ENSMNEG00000031382	TSR1	98	55.322	Macaca_nemestrina
ENSXCOG00000009635	tsr1	98	55.322	ENSMLEG00000036733	TSR1	98	55.074	Mandrillus_leucophaeus
ENSXCOG00000009635	tsr1	100	81.213	ENSMAMG00000017918	tsr1	99	81.287	Mastacembelus_armatus
ENSXCOG00000009635	tsr1	100	83.153	ENSMZEG00005007477	tsr1	100	83.153	Maylandia_zebra
ENSXCOG00000009635	tsr1	99	57.317	ENSMGAG00000005576	TSR1	99	57.369	Meleagris_gallopavo
ENSXCOG00000009635	tsr1	99	56.757	ENSMICG00000012943	TSR1	99	56.143	Microcebus_murinus
ENSXCOG00000009635	tsr1	99	55.067	ENSMOCG00000022764	Tsr1	99	53.902	Microtus_ochrogaster
ENSXCOG00000009635	tsr1	100	82.767	ENSMMOG00000014280	tsr1	100	82.767	Mola_mola
ENSXCOG00000009635	tsr1	98	55.814	ENSMODG00000010658	TSR1	99	55.324	Monodelphis_domestica
ENSXCOG00000009635	tsr1	100	81.894	ENSMALG00000011681	tsr1	100	83.213	Monopterus_albus
ENSXCOG00000009635	tsr1	99	55.760	MGP_CAROLIEiJ_G0016727	Tsr1	99	54.945	Mus_caroli
ENSXCOG00000009635	tsr1	99	56.373	ENSMUSG00000038335	Tsr1	99	55.556	Mus_musculus
ENSXCOG00000009635	tsr1	99	56.740	MGP_PahariEiJ_G0017864	Tsr1	99	55.922	Mus_pahari
ENSXCOG00000009635	tsr1	99	56.495	MGP_SPRETEiJ_G0017570	Tsr1	99	55.678	Mus_spretus
ENSXCOG00000009635	tsr1	81	57.571	ENSMPUG00000013000	TSR1	100	57.121	Mustela_putorius_furo
ENSXCOG00000009635	tsr1	98	56.495	ENSMLUG00000003505	TSR1	99	56.581	Myotis_lucifugus
ENSXCOG00000009635	tsr1	100	82.024	ENSNBRG00000020728	tsr1	99	83.073	Neolamprologus_brichardi
ENSXCOG00000009635	tsr1	99	51.285	ENSNLEG00000017184	TSR1	99	51.582	Nomascus_leucogenys
ENSXCOG00000009635	tsr1	99	52.549	ENSMEUG00000015828	TSR1	99	52.358	Notamacropus_eugenii
ENSXCOG00000009635	tsr1	100	84.318	ENSONIG00000013131	tsr1	100	83.595	Oreochromis_niloticus
ENSXCOG00000009635	tsr1	95	54.477	ENSOANG00000008637	TSR1	100	52.993	Ornithorhynchus_anatinus
ENSXCOG00000009635	tsr1	98	56.880	ENSOCUG00000014256	TSR1	99	56.388	Oryctolagus_cuniculus
ENSXCOG00000009635	tsr1	100	80.312	ENSORLG00000004926	tsr1	99	81.010	Oryzias_latipes
ENSXCOG00000009635	tsr1	100	80.409	ENSORLG00020008792	tsr1	99	80.552	Oryzias_latipes_hni
ENSXCOG00000009635	tsr1	100	80.552	ENSORLG00015013838	tsr1	99	81.250	Oryzias_latipes_hsok
ENSXCOG00000009635	tsr1	100	80.958	ENSOMEG00000004830	tsr1	99	81.370	Oryzias_melastigma
ENSXCOG00000009635	tsr1	99	55.085	ENSOGAG00000004492	TSR1	99	54.843	Otolemur_garnettii
ENSXCOG00000009635	tsr1	99	57.108	ENSOARG00000015437	TSR1	97	56.495	Ovis_aries
ENSXCOG00000009635	tsr1	99	54.945	ENSPPAG00000036355	TSR1	99	54.701	Pan_paniscus
ENSXCOG00000009635	tsr1	99	54.957	ENSPPRG00000015519	-	99	55.092	Panthera_pardus
ENSXCOG00000009635	tsr1	99	55.460	ENSPTIG00000010608	TSR1	99	55.092	Panthera_tigris_altaica
ENSXCOG00000009635	tsr1	99	54.945	ENSPTRG00000008547	TSR1	99	54.701	Pan_troglodytes
ENSXCOG00000009635	tsr1	98	52.664	ENSPANG00000024463	TSR1	98	53.160	Papio_anubis
ENSXCOG00000009635	tsr1	100	72.169	ENSPKIG00000013972	tsr1	100	71.807	Paramormyrops_kingsleyae
ENSXCOG00000009635	tsr1	87	56.825	ENSPSIG00000018258	TSR1	99	56.250	Pelodiscus_sinensis
ENSXCOG00000009635	tsr1	99	78.858	ENSPMGG00000011577	tsr1	99	79.707	Periophthalmus_magnuspinnatus
ENSXCOG00000009635	tsr1	99	54.657	ENSPEMG00000018033	Tsr1	99	53.922	Peromyscus_maniculatus_bairdii
ENSXCOG00000009635	tsr1	99	56.364	ENSPCIG00000009357	TSR1	97	56.212	Phascolarctos_cinereus
ENSXCOG00000009635	tsr1	100	92.736	ENSPFOG00000004483	TSR1	100	93.947	Poecilia_formosa
ENSXCOG00000009635	tsr1	100	91.647	ENSPLAG00000022320	tsr1	99	93.301	Poecilia_latipinna
ENSXCOG00000009635	tsr1	100	91.885	ENSPMEG00000004577	tsr1	99	93.421	Poecilia_mexicana
ENSXCOG00000009635	tsr1	97	92.015	ENSPREG00000010354	tsr1	96	93.481	Poecilia_reticulata
ENSXCOG00000009635	tsr1	99	50.914	ENSPPYG00000007792	TSR1	99	50.670	Pongo_abelii
ENSXCOG00000009635	tsr1	52	60.465	ENSPCAG00000012973	-	70	66.667	Procavia_capensis
ENSXCOG00000009635	tsr1	99	55.814	ENSPCOG00000017928	TSR1	99	55.774	Propithecus_coquereli
ENSXCOG00000009635	tsr1	99	56.127	ENSPVAG00000002162	TSR1	99	55.515	Pteropus_vampyrus
ENSXCOG00000009635	tsr1	100	83.836	ENSPNYG00000016163	tsr1	99	83.595	Pundamilia_nyererei
ENSXCOG00000009635	tsr1	99	73.508	ENSPNAG00000008659	tsr1	99	73.508	Pygocentrus_nattereri
ENSXCOG00000009635	tsr1	99	55.392	ENSRNOG00000002980	Tsr1	99	54.335	Rattus_norvegicus
ENSXCOG00000009635	tsr1	99	55.189	ENSRBIG00000040016	TSR1	99	54.866	Rhinopithecus_bieti
ENSXCOG00000009635	tsr1	99	55.067	ENSRROG00000030361	TSR1	99	54.745	Rhinopithecus_roxellana
ENSXCOG00000009635	tsr1	99	55.067	ENSSBOG00000020785	TSR1	99	54.938	Saimiri_boliviensis_boliviensis
ENSXCOG00000009635	tsr1	99	56.622	ENSSHAG00000011394	TSR1	99	56.379	Sarcophilus_harrisii
ENSXCOG00000009635	tsr1	100	72.848	ENSSFOG00015005455	tsr1	100	72.222	Scleropages_formosus
ENSXCOG00000009635	tsr1	100	80.576	ENSSMAG00000009504	tsr1	100	80.695	Scophthalmus_maximus
ENSXCOG00000009635	tsr1	100	82.177	ENSSDUG00000012074	tsr1	99	82.656	Seriola_dumerili
ENSXCOG00000009635	tsr1	100	81.981	ENSSLDG00000002031	tsr1	99	83.213	Seriola_lalandi_dorsalis
ENSXCOG00000009635	tsr1	92	56.000	ENSSARG00000000759	TSR1	93	56.000	Sorex_araneus
ENSXCOG00000009635	tsr1	99	57.125	ENSSPUG00000007042	TSR1	99	56.760	Sphenodon_punctatus
ENSXCOG00000009635	tsr1	100	84.229	ENSSPAG00000021951	tsr1	100	83.751	Stegastes_partitus
ENSXCOG00000009635	tsr1	99	56.373	ENSSSCG00000038534	TSR1	99	55.189	Sus_scrofa
ENSXCOG00000009635	tsr1	90	60.864	ENSTGUG00000005883	TSR1	100	60.864	Taeniopygia_guttata
ENSXCOG00000009635	tsr1	100	81.840	ENSTRUG00000004665	tsr1	100	82.203	Takifugu_rubripes
ENSXCOG00000009635	tsr1	99	81.796	ENSTNIG00000016196	tsr1	100	81.885	Tetraodon_nigroviridis
ENSXCOG00000009635	tsr1	66	68.462	ENSTBEG00000015275	-	66	68.462	Tupaia_belangeri
ENSXCOG00000009635	tsr1	99	56.985	ENSTTRG00000001177	TSR1	99	56.373	Tursiops_truncatus
ENSXCOG00000009635	tsr1	99	54.668	ENSUAMG00000025160	TSR1	99	54.300	Ursus_americanus
ENSXCOG00000009635	tsr1	95	54.822	ENSUMAG00000009294	TSR1	98	54.442	Ursus_maritimus
ENSXCOG00000009635	tsr1	83	51.533	ENSVPAG00000000228	TSR1	99	50.803	Vicugna_pacos
ENSXCOG00000009635	tsr1	99	55.447	ENSVVUG00000021767	TSR1	99	55.080	Vulpes_vulpes
ENSXCOG00000009635	tsr1	100	53.477	ENSXETG00000023797	tsr1	100	53.181	Xenopus_tropicalis
ENSXCOG00000009635	tsr1	100	97.476	ENSXMAG00000001397	tsr1	97	97.476	Xiphophorus_maculatus