EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSXCOG00000009643 (Gene tree)
Gene ID: -
Gene Symbol: -
Alias: -
Full Name: -
Gene Type: protein_coding
Species: Xiphophorus_couchianus
Status: putative
Strand: Plus strand
Length: 5522 bases
Position: chrKQ557210.1:4868844-4874365
Accession: -
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSXCOP00000013042	RRM_1	PF00076.22	1.5e-32	1	2
ENSXCOP00000013042	RRM_1	PF00076.22	1.5e-32	2	2
ENSXCOP00000013207	RRM_1	PF00076.22	1.5e-32	1	2
ENSXCOP00000013207	RRM_1	PF00076.22	1.5e-32	2	2
ENSXCOP00000012773	RRM_1	PF00076.22	2e-32	1	2
ENSXCOP00000012773	RRM_1	PF00076.22	2e-32	2	2

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSXCOT00000013368	-	753	-	ENSXCOP00000013207	250 (aa)	-	UPI0006D905AF
ENSXCOT00000012928	-	717	-	ENSXCOP00000012773	238 (aa)	-	-
ENSXCOT00000013203	-	747	-	ENSXCOP00000013042	248 (aa)	-	-

Gene Model

Click here to download ENSXCOG00000009643's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSXCOG00000009643's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSXCOG00000009643	-	71	47.093	ENSXCOG00000018826	srsf4	87	42.149
ENSXCOG00000009643	-	75	37.949	ENSXCOG00000003212	-	63	35.874
ENSXCOG00000009643	-	72	40.513	ENSXCOG00000001570	srsf5b	61	43.243
ENSXCOG00000009643	-	68	41.899	ENSXCOG00000015338	srsf5a	74	36.596
ENSXCOG00000009643	-	79	85.789	ENSXCOG00000017888	-	78	86.631

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSXCOG00000009643	-	74	87.709	ENSACIG00000002623	-	96	88.587	Amphilophus_citrinellus
ENSXCOG00000009643	-	96	75.417	ENSACLG00000021693	-	80	81.373	Astatotilapia_calliptera
ENSXCOG00000009643	-	100	97.581	ENSACLG00000005676	-	100	97.581	Astatotilapia_calliptera
ENSXCOG00000009643	-	97	54.098	WBGene00004700	rsp-3	75	61.026	Caenorhabditis_elegans
ENSXCOG00000009643	-	75	71.823	ENSCING00000007375	-	79	68.984	Ciona_intestinalis
ENSXCOG00000009643	-	73	57.143	ENSCING00000000257	-	99	54.598	Ciona_intestinalis
ENSXCOG00000009643	-	78	69.681	ENSCSAVG00000006093	-	91	70.718	Ciona_savignyi
ENSXCOG00000009643	-	63	58.278	ENSCSAVG00000003567	-	96	51.497	Ciona_savignyi
ENSXCOG00000009643	-	75	67.742	FBgn0283477	SF2	73	67.204	Drosophila_melanogaster
ENSXCOG00000009643	-	99	73.840	ENSEBUG00000009582	-	93	68.889	Eptatretus_burgeri
ENSXCOG00000009643	-	77	85.417	ENSFHEG00000017425	-	97	84.865	Fundulus_heteroclitus
ENSXCOG00000009643	-	74	95.652	ENSGMOG00000010606	-	98	95.652	Gadus_morhua
ENSXCOG00000009643	-	100	100.000	ENSGAFG00000012721	-	100	100.000	Gambusia_affinis
ENSXCOG00000009643	-	79	85.279	ENSGAFG00000000609	-	79	84.000	Gambusia_affinis
ENSXCOG00000009643	-	73	97.802	ENSGACG00000011094	-	98	97.802	Gasterosteus_aculeatus
ENSXCOG00000009643	-	80	83.168	ENSHBUG00000015576	-	80	82.266	Haplochromis_burtoni
ENSXCOG00000009643	-	77	82.540	ENSHCOG00000008016	-	77	80.102	Hippocampus_comes
ENSXCOG00000009643	-	99	82.500	ENSMFAG00000034223	-	65	87.245	Macaca_fascicularis
ENSXCOG00000009643	-	78	85.128	ENSMZEG00005019071	-	98	84.043	Maylandia_zebra
ENSXCOG00000009643	-	100	97.581	ENSMZEG00005007947	-	100	97.581	Maylandia_zebra
ENSXCOG00000009643	-	78	86.243	ENSMMOG00000018849	-	77	86.243	Mola_mola
ENSXCOG00000009643	-	100	97.581	ENSNBRG00000019981	-	100	97.581	Neolamprologus_brichardi
ENSXCOG00000009643	-	78	86.096	ENSNBRG00000008134	-	76	85.052	Neolamprologus_brichardi
ENSXCOG00000009643	-	66	68.553	ENSOPRG00000004745	-	96	67.901	Ochotona_princeps
ENSXCOG00000009643	-	78	83.838	ENSONIG00000004857	-	80	83.415	Oreochromis_niloticus
ENSXCOG00000009643	-	58	82.014	ENSOANG00000007320	-	54	92.045	Ornithorhynchus_anatinus
ENSXCOG00000009643	-	68	55.828	ENSOCUG00000026856	-	95	53.846	Oryctolagus_cuniculus
ENSXCOG00000009643	-	78	87.368	ENSORLG00000005314	-	76	87.310	Oryzias_latipes
ENSXCOG00000009643	-	78	87.368	ENSORLG00015015497	-	76	87.310	Oryzias_latipes_hsok
ENSXCOG00000009643	-	78	85.641	ENSOMEG00000017711	-	76	85.644	Oryzias_melastigma
ENSXCOG00000009643	-	100	100.000	ENSPLAG00000019553	-	100	100.000	Poecilia_latipinna
ENSXCOG00000009643	-	100	99.600	ENSPLAG00000019613	-	100	99.600	Poecilia_latipinna
ENSXCOG00000009643	-	79	86.154	ENSPREG00000016792	-	79	84.848	Poecilia_reticulata
ENSXCOG00000009643	-	78	84.264	ENSPNYG00000020651	-	77	83.333	Pundamilia_nyererei
ENSXCOG00000009643	-	100	97.581	ENSPNYG00000017115	-	100	97.581	Pundamilia_nyererei
ENSXCOG00000009643	-	83	92.000	ENSSFOG00015004989	-	69	90.426	Scleropages_formosus
ENSXCOG00000009643	-	78	83.824	ENSSDUG00000003887	-	79	83.412	Seriola_dumerili
ENSXCOG00000009643	-	79	84.103	ENSTRUG00000017058	-	79	85.641	Takifugu_rubripes
ENSXCOG00000009643	-	79	81.122	ENSTNIG00000009993	-	80	82.143	Tetraodon_nigroviridis
ENSXCOG00000009643	-	79	85.714	ENSXMAG00000010797	-	79	84.422	Xiphophorus_maculatus