EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSXCOG00000009665 (Gene tree)
Gene ID: -
Gene Symbol: -
Alias: -
Full Name: -
Gene Type: protein_coding
Species: Xiphophorus_couchianus
Status: putative
Strand: Minus strand
Length: 14251 bases
Position: chrKQ557210.1:29271083-29285333
Accession: -
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSXCOP00000012788	zf-C2H2	PF00096.26	6.7e-33	1	5
ENSXCOP00000012788	zf-C2H2	PF00096.26	6.7e-33	2	5
ENSXCOP00000012788	zf-C2H2	PF00096.26	6.7e-33	3	5
ENSXCOP00000012788	zf-C2H2	PF00096.26	6.7e-33	4	5
ENSXCOP00000012788	zf-C2H2	PF00096.26	6.7e-33	5	5
ENSXCOP00000012791	zf-C2H2	PF00096.26	2.2e-11	1	2
ENSXCOP00000012791	zf-C2H2	PF00096.26	2.2e-11	2	2
ENSXCOP00000012788	zf-met	PF12874.7	3.3e-12	1	2
ENSXCOP00000012788	zf-met	PF12874.7	3.3e-12	2	2
ENSXCOP00000012791	zf-met	PF12874.7	3.6e-07	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSXCOT00000012945	-	390	-	ENSXCOP00000012791	129 (aa)	-	-
ENSXCOT00000012942	-	1071	-	ENSXCOP00000012788	356 (aa)	-	-

Gene Model

Click here to download ENSXCOG00000009665's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSXCOG00000009665's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSXCOG00000009665	-	82	48.333	ENSXCOG00000007937	-	77	48.696
ENSXCOG00000009665	-	78	41.176	ENSXCOG00000017528	snai1a	51	41.176
ENSXCOG00000009665	-	80	41.566	ENSXCOG00000012458	-	66	41.566
ENSXCOG00000009665	-	83	47.500	ENSXCOG00000000254	-	78	44.898
ENSXCOG00000009665	-	85	37.107	ENSXCOG00000019382	-	76	46.479
ENSXCOG00000009665	-	82	47.020	ENSXCOG00000009668	-	82	47.020
ENSXCOG00000009665	-	90	41.935	ENSXCOG00000003438	-	67	43.243
ENSXCOG00000009665	-	86	44.318	ENSXCOG00000003431	-	79	43.885
ENSXCOG00000009665	-	88	44.706	ENSXCOG00000003435	-	77	44.706
ENSXCOG00000009665	-	80	36.842	ENSXCOG00000009772	-	80	36.842
ENSXCOG00000009665	-	79	52.874	ENSXCOG00000019484	-	85	52.874
ENSXCOG00000009665	-	94	36.025	ENSXCOG00000013870	-	70	44.286
ENSXCOG00000009665	-	94	40.984	ENSXCOG00000019401	-	95	42.623
ENSXCOG00000009665	-	82	44.561	ENSXCOG00000000354	-	70	50.617
ENSXCOG00000009665	-	87	47.368	ENSXCOG00000001226	-	87	44.674
ENSXCOG00000009665	-	94	41.216	ENSXCOG00000003484	-	59	45.122
ENSXCOG00000009665	-	81	47.826	ENSXCOG00000007945	-	89	47.500
ENSXCOG00000009665	-	80	45.556	ENSXCOG00000007941	-	90	45.556
ENSXCOG00000009665	-	79	48.684	ENSXCOG00000010507	-	58	47.273
ENSXCOG00000009665	-	83	52.439	ENSXCOG00000010950	si:dkey-210j14.3	64	52.439
ENSXCOG00000009665	-	81	35.714	ENSXCOG00000015432	-	86	30.159
ENSXCOG00000009665	-	77	46.296	ENSXCOG00000001645	si:dkey-89b17.4	70	31.086
ENSXCOG00000009665	-	85	42.105	ENSXCOG00000019675	scrt1b	51	42.105
ENSXCOG00000009665	-	68	54.545	ENSXCOG00000016589	-	96	54.717
ENSXCOG00000009665	-	84	55.556	ENSXCOG00000016860	-	98	55.556
ENSXCOG00000009665	-	80	50.649	ENSXCOG00000009777	-	58	50.649
ENSXCOG00000009665	-	85	53.719	ENSXCOG00000007994	-	88	50.617
ENSXCOG00000009665	-	85	47.727	ENSXCOG00000010567	-	95	46.154
ENSXCOG00000009665	-	79	44.872	ENSXCOG00000002869	-	57	41.593
ENSXCOG00000009665	-	92	42.601	ENSXCOG00000008062	-	96	50.000
ENSXCOG00000009665	-	81	48.718	ENSXCOG00000009186	-	95	48.718
ENSXCOG00000009665	-	90	46.715	ENSXCOG00000003451	-	96	50.000
ENSXCOG00000009665	-	98	49.275	ENSXCOG00000007529	-	98	49.333
ENSXCOG00000009665	-	80	40.000	ENSXCOG00000009992	zbtb47b	83	40.000
ENSXCOG00000009665	-	80	46.218	ENSXCOG00000010259	-	55	46.218
ENSXCOG00000009665	-	93	47.674	ENSXCOG00000002857	-	93	53.247
ENSXCOG00000009665	-	78	49.367	ENSXCOG00000013004	-	72	45.791
ENSXCOG00000009665	-	88	48.750	ENSXCOG00000007376	-	99	46.341
ENSXCOG00000009665	-	76	41.441	ENSXCOG00000005697	-	98	42.500
ENSXCOG00000009665	-	95	41.404	ENSXCOG00000017871	zgc:113343	62	52.326
ENSXCOG00000009665	-	90	31.507	ENSXCOG00000002714	-	93	31.507
ENSXCOG00000009665	-	79	51.064	ENSXCOG00000018315	-	97	51.064
ENSXCOG00000009665	-	76	47.273	ENSXCOG00000015435	-	82	47.273
ENSXCOG00000009665	-	86	48.000	ENSXCOG00000010948	-	68	48.000
ENSXCOG00000009665	-	87	47.619	ENSXCOG00000007406	-	97	48.780
ENSXCOG00000009665	-	96	44.318	ENSXCOG00000019492	-	89	47.727
ENSXCOG00000009665	-	80	35.238	ENSXCOG00000008003	-	53	35.238
ENSXCOG00000009665	-	87	50.549	ENSXCOG00000019482	-	87	41.825
ENSXCOG00000009665	-	83	47.222	ENSXCOG00000019481	-	94	47.222
ENSXCOG00000009665	-	79	52.830	ENSXCOG00000012924	-	86	52.830
ENSXCOG00000009665	-	100	51.724	ENSXCOG00000009597	ZNF319	97	37.282
ENSXCOG00000009665	-	92	35.507	ENSXCOG00000019861	-	68	35.507
ENSXCOG00000009665	-	88	43.830	ENSXCOG00000008083	-	99	41.899
ENSXCOG00000009665	-	90	40.072	ENSXCOG00000007979	-	70	46.341
ENSXCOG00000009665	-	81	46.774	ENSXCOG00000002473	-	88	46.565
ENSXCOG00000009665	-	85	41.667	ENSXCOG00000018615	-	98	41.667
ENSXCOG00000009665	-	81	44.068	ENSXCOG00000019377	-	93	44.068
ENSXCOG00000009665	-	84	46.185	ENSXCOG00000016117	-	95	49.383
ENSXCOG00000009665	-	94	45.532	ENSXCOG00000017328	-	82	46.552
ENSXCOG00000009665	-	85	50.000	ENSXCOG00000016307	-	99	49.618
ENSXCOG00000009665	-	74	42.000	ENSXCOG00000015428	-	82	42.000
ENSXCOG00000009665	-	91	43.750	ENSXCOG00000003472	-	95	40.351
ENSXCOG00000009665	-	82	34.836	ENSXCOG00000009785	-	65	42.308
ENSXCOG00000009665	-	81	38.214	ENSXCOG00000003896	-	57	45.098
ENSXCOG00000009665	-	81	42.969	ENSXCOG00000007396	-	87	46.512
ENSXCOG00000009665	-	88	49.383	ENSXCOG00000003537	-	88	49.383
ENSXCOG00000009665	-	92	50.000	ENSXCOG00000019443	-	98	49.180
ENSXCOG00000009665	-	80	53.846	ENSXCOG00000018799	sall3b	60	45.652
ENSXCOG00000009665	-	95	43.678	ENSXCOG00000003530	-	86	40.625
ENSXCOG00000009665	-	91	45.455	ENSXCOG00000003532	-	82	45.455
ENSXCOG00000009665	-	83	44.248	ENSXCOG00000003538	-	99	42.500
ENSXCOG00000009665	-	86	52.857	ENSXCOG00000001116	-	92	49.020
ENSXCOG00000009665	-	82	40.690	ENSXCOG00000003093	-	84	40.000
ENSXCOG00000009665	-	81	46.552	ENSXCOG00000013066	-	90	31.250
ENSXCOG00000009665	-	79	44.048	ENSXCOG00000020638	wt1a	51	44.048
ENSXCOG00000009665	-	94	50.420	ENSXCOG00000006951	-	94	50.420
ENSXCOG00000009665	-	96	43.793	ENSXCOG00000015441	-	88	46.552
ENSXCOG00000009665	-	86	50.746	ENSXCOG00000003493	-	69	52.174
ENSXCOG00000009665	-	75	45.679	ENSXCOG00000014363	-	59	45.679
ENSXCOG00000009665	-	71	47.170	ENSXCOG00000015947	-	90	45.763
ENSXCOG00000009665	-	86	43.689	ENSXCOG00000020769	-	98	43.689
ENSXCOG00000009665	-	86	44.275	ENSXCOG00000020768	-	75	44.275
ENSXCOG00000009665	-	84	44.000	ENSXCOG00000003441	-	59	44.000
ENSXCOG00000009665	-	64	54.902	ENSXCOG00000007420	-	97	53.704
ENSXCOG00000009665	-	87	41.135	ENSXCOG00000013306	-	60	41.135
ENSXCOG00000009665	-	88	41.463	ENSXCOG00000008567	prdm5	74	36.842
ENSXCOG00000009665	-	85	47.500	ENSXCOG00000009674	-	91	47.500
ENSXCOG00000009665	-	90	42.466	ENSXCOG00000019149	znf526	85	37.391
ENSXCOG00000009665	-	85	43.578	ENSXCOG00000002512	-	80	47.191
ENSXCOG00000009665	-	82	41.935	ENSXCOG00000007076	-	99	45.455
ENSXCOG00000009665	-	88	50.505	ENSXCOG00000011725	-	97	47.727
ENSXCOG00000009665	-	94	40.000	ENSXCOG00000013787	-	67	40.000
ENSXCOG00000009665	-	81	38.053	ENSXCOG00000015084	snai2	54	38.053
ENSXCOG00000009665	-	85	46.014	ENSXCOG00000000528	-	90	46.286
ENSXCOG00000009665	-	80	51.852	ENSXCOG00000010576	-	81	43.243
ENSXCOG00000009665	-	81	50.746	ENSXCOG00000007957	-	96	50.746
ENSXCOG00000009665	-	85	43.825	ENSXCOG00000007139	-	75	50.000
ENSXCOG00000009665	-	91	48.780	ENSXCOG00000008116	-	99	45.848
ENSXCOG00000009665	-	91	42.857	ENSXCOG00000006614	-	99	42.857
ENSXCOG00000009665	-	93	46.763	ENSXCOG00000003499	-	66	46.763
ENSXCOG00000009665	-	80	50.633	ENSXCOG00000010488	-	82	33.333
ENSXCOG00000009665	-	82	45.614	ENSXCOG00000000036	znf341	52	45.614
ENSXCOG00000009665	-	80	45.588	ENSXCOG00000014361	-	61	45.588
ENSXCOG00000009665	-	89	44.954	ENSXCOG00000006553	-	95	44.954
ENSXCOG00000009665	-	96	43.662	ENSXCOG00000012921	-	96	42.049
ENSXCOG00000009665	-	83	36.161	ENSXCOG00000007499	zbtb41	57	39.773
ENSXCOG00000009665	-	92	52.564	ENSXCOG00000012064	-	73	52.564
ENSXCOG00000009665	-	83	44.048	ENSXCOG00000015312	-	89	44.048
ENSXCOG00000009665	-	81	38.889	ENSXCOG00000009768	-	76	36.765
ENSXCOG00000009665	-	94	50.746	ENSXCOG00000007981	-	90	47.561
ENSXCOG00000009665	-	99	44.118	ENSXCOG00000007987	-	82	46.154
ENSXCOG00000009665	-	81	44.186	ENSXCOG00000001292	-	83	44.186
ENSXCOG00000009665	-	82	50.515	ENSXCOG00000008978	-	96	50.515
ENSXCOG00000009665	-	79	48.101	ENSXCOG00000011372	-	73	48.101
ENSXCOG00000009665	-	92	43.820	ENSXCOG00000007414	-	93	43.820
ENSXCOG00000009665	-	82	48.361	ENSXCOG00000007413	-	70	48.361
ENSXCOG00000009665	-	88	51.899	ENSXCOG00000002898	-	82	56.250
ENSXCOG00000009665	-	88	43.077	ENSXCOG00000001200	-	95	44.318
ENSXCOG00000009665	-	81	46.552	ENSXCOG00000003468	-	78	47.436
ENSXCOG00000009665	-	76	45.000	ENSXCOG00000009794	-	97	34.982
ENSXCOG00000009665	-	81	42.268	ENSXCOG00000009798	-	70	44.565
ENSXCOG00000009665	-	79	39.024	ENSXCOG00000003001	-	86	39.024
ENSXCOG00000009665	-	88	49.383	ENSXCOG00000019457	-	92	49.383
ENSXCOG00000009665	-	84	50.909	ENSXCOG00000018253	-	92	50.909
ENSXCOG00000009665	-	92	52.113	ENSXCOG00000016567	-	70	63.415
ENSXCOG00000009665	-	81	45.679	ENSXCOG00000009781	-	60	45.679
ENSXCOG00000009665	-	91	50.000	ENSXCOG00000009003	-	96	46.667
ENSXCOG00000009665	-	85	43.346	ENSXCOG00000007368	-	93	46.591
ENSXCOG00000009665	-	82	51.724	ENSXCOG00000012645	-	50	51.724

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSXCOG00000009665	-	94	45.349	ENSAPOG00000004328	-	86	40.351	Acanthochromis_polyacanthus
ENSXCOG00000009665	-	84	61.538	ENSAPOG00000013511	-	52	61.538	Acanthochromis_polyacanthus
ENSXCOG00000009665	-	93	43.038	ENSACIG00000010739	-	79	35.714	Amphilophus_citrinellus
ENSXCOG00000009665	-	94	45.349	ENSAOCG00000007045	-	84	40.559	Amphiprion_ocellaris
ENSXCOG00000009665	-	87	61.538	ENSAPEG00000016483	-	59	61.538	Amphiprion_percula
ENSXCOG00000009665	-	94	45.349	ENSAPEG00000001596	-	78	40.559	Amphiprion_percula
ENSXCOG00000009665	-	94	46.512	ENSATEG00000006085	-	90	38.258	Anabas_testudineus
ENSXCOG00000009665	-	91	47.126	ENSACAG00000000082	-	98	47.126	Anolis_carolinensis
ENSXCOG00000009665	-	91	44.643	ENSACAG00000025537	-	96	44.444	Anolis_carolinensis
ENSXCOG00000009665	-	79	57.143	ENSAMXG00000035145	-	65	48.718	Astyanax_mexicanus
ENSXCOG00000009665	-	88	41.053	ENSAMXG00000017199	-	50	38.235	Astyanax_mexicanus
ENSXCOG00000009665	-	83	54.074	ENSAMXG00000035949	-	76	54.074	Astyanax_mexicanus
ENSXCOG00000009665	-	79	48.750	ENSAMXG00000026143	-	97	45.000	Astyanax_mexicanus
ENSXCOG00000009665	-	92	47.727	ENSAMXG00000032237	-	91	47.727	Astyanax_mexicanus
ENSXCOG00000009665	-	80	56.757	ENSAMXG00000033013	-	81	48.837	Astyanax_mexicanus
ENSXCOG00000009665	-	87	50.435	ENSAMXG00000012873	-	95	47.826	Astyanax_mexicanus
ENSXCOG00000009665	-	81	47.059	ENSAMXG00000036257	-	92	47.059	Astyanax_mexicanus
ENSXCOG00000009665	-	86	46.591	ENSCVAG00000011235	-	87	46.591	Cyprinodon_variegatus
ENSXCOG00000009665	-	91	50.000	ENSELUG00000021287	-	81	50.000	Esox_lucius
ENSXCOG00000009665	-	98	50.649	ENSELUG00000013357	-	87	50.649	Esox_lucius
ENSXCOG00000009665	-	82	48.696	ENSELUG00000013844	-	79	36.975	Esox_lucius
ENSXCOG00000009665	-	89	67.033	ENSFHEG00000019915	-	74	68.966	Fundulus_heteroclitus
ENSXCOG00000009665	-	92	50.617	ENSGMOG00000003238	-	98	50.617	Gadus_morhua
ENSXCOG00000009665	-	95	70.330	ENSGAFG00000003150	-	84	70.330	Gambusia_affinis
ENSXCOG00000009665	-	98	46.591	ENSGAFG00000012977	-	90	40.418	Gambusia_affinis
ENSXCOG00000009665	-	83	43.509	ENSIPUG00000006916	-	87	43.509	Ictalurus_punctatus
ENSXCOG00000009665	-	81	44.860	ENSIPUG00000004428	-	75	48.780	Ictalurus_punctatus
ENSXCOG00000009665	-	83	43.871	ENSIPUG00000021556	-	88	43.871	Ictalurus_punctatus
ENSXCOG00000009665	-	98	48.193	ENSKMAG00000004988	-	81	48.193	Kryptolebias_marmoratus
ENSXCOG00000009665	-	93	48.780	ENSLOCG00000014366	-	92	48.780	Lepisosteus_oculatus
ENSXCOG00000009665	-	97	50.000	ENSLOCG00000014144	-	99	50.000	Lepisosteus_oculatus
ENSXCOG00000009665	-	87	59.341	ENSMAMG00000016542	-	61	59.341	Mastacembelus_armatus
ENSXCOG00000009665	-	94	46.512	ENSMAMG00000019301	-	90	48.193	Mastacembelus_armatus
ENSXCOG00000009665	-	81	47.500	ENSMMOG00000009852	-	85	47.500	Mola_mola
ENSXCOG00000009665	-	93	53.506	ENSMALG00000005554	-	97	54.945	Monopterus_albus
ENSXCOG00000009665	-	80	49.123	ENSOCUG00000005876	-	96	49.123	Oryctolagus_cuniculus
ENSXCOG00000009665	-	86	51.852	ENSPKIG00000006616	-	58	52.098	Paramormyrops_kingsleyae
ENSXCOG00000009665	-	95	41.111	ENSPMGG00000017633	-	93	41.111	Periophthalmus_magnuspinnatus
ENSXCOG00000009665	-	92	46.591	ENSPFOG00000010682	-	90	39.721	Poecilia_formosa
ENSXCOG00000009665	-	86	52.459	ENSPLAG00000002892	-	69	52.459	Poecilia_latipinna
ENSXCOG00000009665	-	92	46.591	ENSPMEG00000001399	-	90	39.721	Poecilia_mexicana
ENSXCOG00000009665	-	85	32.975	ENSPREG00000002582	-	73	34.630	Poecilia_reticulata
ENSXCOG00000009665	-	92	46.591	ENSPREG00000001386	-	90	40.070	Poecilia_reticulata
ENSXCOG00000009665	-	79	46.835	ENSPNAG00000015116	-	65	46.835	Pygocentrus_nattereri
ENSXCOG00000009665	-	91	45.122	ENSPNAG00000025570	-	82	45.122	Pygocentrus_nattereri
ENSXCOG00000009665	-	81	41.368	ENSPNAG00000000219	-	82	46.250	Pygocentrus_nattereri
ENSXCOG00000009665	-	93	54.023	ENSSFOG00015006108	-	56	54.023	Scleropages_formosus
ENSXCOG00000009665	-	93	43.750	ENSSMAG00000009115	-	84	55.769	Scophthalmus_maximus
ENSXCOG00000009665	-	87	59.341	ENSSDUG00000002195	-	90	61.404	Seriola_dumerili
ENSXCOG00000009665	-	94	46.512	ENSSDUG00000006463	-	88	39.116	Seriola_dumerili
ENSXCOG00000009665	-	94	46.512	ENSSLDG00000006724	-	95	46.512	Seriola_lalandi_dorsalis
ENSXCOG00000009665	-	86	51.948	ENSSLDG00000020727	-	99	53.731	Seriola_lalandi_dorsalis
ENSXCOG00000009665	-	84	38.710	ENSSPAG00000012960	-	78	45.000	Stegastes_partitus
ENSXCOG00000009665	-	88	58.025	ENSSPAG00000021008	-	91	55.670	Stegastes_partitus
ENSXCOG00000009665	-	95	41.549	ENSTRUG00000021675	-	77	41.549	Takifugu_rubripes
ENSXCOG00000009665	-	86	58.242	ENSTRUG00000005321	-	99	54.305	Takifugu_rubripes
ENSXCOG00000009665	-	84	53.247	ENSTNIG00000000320	-	100	50.794	Tetraodon_nigroviridis
ENSXCOG00000009665	-	84	45.455	ENSTNIG00000008200	-	99	45.455	Tetraodon_nigroviridis
ENSXCOG00000009665	-	91	53.061	ENSXETG00000006575	znf420	74	53.061	Xenopus_tropicalis
ENSXCOG00000009665	-	92	46.591	ENSXMAG00000028625	-	90	40.418	Xiphophorus_maculatus