EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: ENSXCOG00000009867 (Gene tree)
Gene ID: -
Gene Symbol: smg6
Alias: si:dkey-16f21.2
Full Name: SMG6 nonsense mediated mRNA decay factor
Gene Type: protein_coding
Species: Xiphophorus_couchianus
Status: putative
Strand: Minus strand
Length: 10497 bases
Position: chrKQ557203.1:5340532-5351028
Accession: ZDB-GENE-081107-52
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSXCOP00000013033	EST1	PF10374.9	1.1e-12	1	1
ENSXCOP00000013033	EST1_DNA_bind	PF10373.9	2.4e-55	1	1
ENSXCOP00000013033	PIN_4	PF13638.6	2.8e-23	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSXCOT00000013193	-	4644	-	ENSXCOP00000013033	1547 (aa)	-	-

Gene Model

Click here to download ENSXCOG00000009867's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSXCOG00000009867's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSXCOG00000009867	smg6	74	55.175	ENSG00000070366	SMG6	100	60.571	Homo_sapiens
ENSXCOG00000009867	smg6	99	70.074	ENSAPOG00000019448	smg6	98	71.077	Acanthochromis_polyacanthus
ENSXCOG00000009867	smg6	93	71.954	ENSACIG00000012997	smg6	100	72.241	Amphilophus_citrinellus
ENSXCOG00000009867	smg6	99	70.972	ENSAOCG00000002630	smg6	98	71.481	Amphiprion_ocellaris
ENSXCOG00000009867	smg6	99	70.769	ENSAPEG00000019101	smg6	98	71.279	Amphiprion_percula
ENSXCOG00000009867	smg6	99	67.697	ENSATEG00000006483	smg6	98	68.670	Anabas_testudineus
ENSXCOG00000009867	smg6	62	49.169	ENSACAG00000011783	SMG6	87	48.422	Anolis_carolinensis
ENSXCOG00000009867	smg6	74	55.378	ENSANAG00000035760	SMG6	72	60.167	Aotus_nancymaae
ENSXCOG00000009867	smg6	99	68.137	ENSACLG00000005288	smg6	100	69.689	Astatotilapia_calliptera
ENSXCOG00000009867	smg6	77	68.375	ENSAMXG00000017326	smg6	82	68.182	Astyanax_mexicanus
ENSXCOG00000009867	smg6	74	55.236	ENSBTAG00000000267	SMG6	83	55.164	Bos_taurus
ENSXCOG00000009867	smg6	74	55.219	ENSCJAG00000001820	SMG6	72	59.981	Callithrix_jacchus
ENSXCOG00000009867	smg6	74	54.960	ENSCAFG00000019260	SMG6	83	54.976	Canis_familiaris
ENSXCOG00000009867	smg6	74	54.960	ENSCAFG00020009770	SMG6	83	54.976	Canis_lupus_dingo
ENSXCOG00000009867	smg6	74	55.032	ENSCHIG00000021998	SMG6	83	54.880	Capra_hircus
ENSXCOG00000009867	smg6	74	54.712	ENSTSYG00000003406	SMG6	100	60.000	Carlito_syrichta
ENSXCOG00000009867	smg6	66	55.635	ENSCAPG00000016197	SMG6	67	55.635	Cavia_aperea
ENSXCOG00000009867	smg6	74	54.400	ENSCPOG00000014878	SMG6	83	61.881	Cavia_porcellus
ENSXCOG00000009867	smg6	74	55.060	ENSCCAG00000035801	SMG6	72	59.981	Cebus_capucinus
ENSXCOG00000009867	smg6	74	54.864	ENSCATG00000031956	SMG6	72	59.610	Cercocebus_atys
ENSXCOG00000009867	smg6	74	54.336	ENSCLAG00000006748	SMG6	82	62.376	Chinchilla_lanigera
ENSXCOG00000009867	smg6	74	55.104	ENSCSAG00000013800	SMG6	72	59.889	Chlorocebus_sabaeus
ENSXCOG00000009867	smg6	76	54.596	ENSCPBG00000020369	SMG6	84	54.509	Chrysemys_picta_bellii
ENSXCOG00000009867	smg6	74	54.980	ENSCANG00000031764	SMG6	100	60.612	Colobus_angolensis_palliatus
ENSXCOG00000009867	smg6	74	49.839	ENSCGRG00000007782	Smg6	84	50.362	Cricetulus_griseus_crigri
ENSXCOG00000009867	smg6	99	62.924	ENSCSEG00000012757	smg6	98	65.177	Cynoglossus_semilaevis
ENSXCOG00000009867	smg6	98	79.634	ENSCVAG00000012789	smg6	98	79.700	Cyprinodon_variegatus
ENSXCOG00000009867	smg6	99	56.772	ENSDARG00000100481	smg6	98	56.610	Danio_rerio
ENSXCOG00000009867	smg6	74	54.170	ENSDNOG00000048283	SMG6	72	59.517	Dasypus_novemcinctus
ENSXCOG00000009867	smg6	74	49.561	ENSDORG00000016614	Smg6	83	61.765	Dipodomys_ordii
ENSXCOG00000009867	smg6	85	87.500	ENSETEG00000016790	SMG6	65	87.500	Echinops_telfairi
ENSXCOG00000009867	smg6	60	47.739	ENSEBUG00000005059	smg6	63	47.739	Eptatretus_burgeri
ENSXCOG00000009867	smg6	74	54.647	ENSEASG00005009318	SMG6	83	55.217	Equus_asinus_asinus
ENSXCOG00000009867	smg6	74	54.647	ENSECAG00000006519	SMG6	83	55.217	Equus_caballus
ENSXCOG00000009867	smg6	74	46.843	ENSEEUG00000003493	SMG6	84	46.640	Erinaceus_europaeus
ENSXCOG00000009867	smg6	77	71.617	ENSELUG00000005934	smg6	84	65.049	Esox_lucius
ENSXCOG00000009867	smg6	74	55.048	ENSFCAG00000028817	SMG6	83	55.136	Felis_catus
ENSXCOG00000009867	smg6	77	53.834	ENSFALG00000006538	SMG6	88	53.756	Ficedula_albicollis
ENSXCOG00000009867	smg6	74	54.589	ENSFDAG00000015106	SMG6	82	61.881	Fukomys_damarensis
ENSXCOG00000009867	smg6	99	82.320	ENSFHEG00000013282	smg6	98	83.260	Fundulus_heteroclitus
ENSXCOG00000009867	smg6	77	53.463	ENSGALG00000003108	SMG6	84	53.385	Gallus_gallus
ENSXCOG00000009867	smg6	99	91.640	ENSGAFG00000000379	smg6	98	91.012	Gambusia_affinis
ENSXCOG00000009867	smg6	88	70.561	ENSGACG00000020521	smg6	100	71.185	Gasterosteus_aculeatus
ENSXCOG00000009867	smg6	74	54.553	ENSGAGG00000025617	SMG6	84	54.708	Gopherus_agassizii
ENSXCOG00000009867	smg6	74	55.139	ENSGGOG00000017156	SMG6	72	59.981	Gorilla_gorilla
ENSXCOG00000009867	smg6	99	68.096	ENSHBUG00000021311	smg6	98	69.014	Haplochromis_burtoni
ENSXCOG00000009867	smg6	74	54.960	ENSHGLG00000012882	SMG6	89	59.091	Heterocephalus_glaber_female
ENSXCOG00000009867	smg6	74	54.960	ENSHGLG00100017815	SMG6	89	59.091	Heterocephalus_glaber_male
ENSXCOG00000009867	smg6	66	69.238	ENSHCOG00000008761	smg6	83	68.571	Hippocampus_comes
ENSXCOG00000009867	smg6	99	53.538	ENSIPUG00000012493	smg6	98	53.680	Ictalurus_punctatus
ENSXCOG00000009867	smg6	55	51.113	ENSJJAG00000015367	Smg6	63	54.645	Jaculus_jaculus
ENSXCOG00000009867	smg6	99	72.627	ENSKMAG00000000279	smg6	98	72.644	Kryptolebias_marmoratus
ENSXCOG00000009867	smg6	99	66.890	ENSLBEG00000002184	smg6	98	66.930	Labrus_bergylta
ENSXCOG00000009867	smg6	54	40.526	ENSLACG00000000806	-	99	42.397	Latimeria_chalumnae
ENSXCOG00000009867	smg6	67	63.826	ENSLOCG00000006448	smg6	77	64.461	Lepisosteus_oculatus
ENSXCOG00000009867	smg6	74	54.821	ENSLAFG00000001261	SMG6	83	55.048	Loxodonta_africana
ENSXCOG00000009867	smg6	74	55.104	ENSMFAG00000003394	SMG6	72	59.889	Macaca_fascicularis
ENSXCOG00000009867	smg6	74	55.183	ENSMMUG00000023161	SMG6	72	59.796	Macaca_mulatta
ENSXCOG00000009867	smg6	74	52.720	ENSMNEG00000044592	SMG6	71	57.369	Macaca_nemestrina
ENSXCOG00000009867	smg6	70	61.636	ENSMLEG00000029353	SMG6	72	61.636	Mandrillus_leucophaeus
ENSXCOG00000009867	smg6	99	67.744	ENSMAMG00000020119	smg6	100	69.201	Mastacembelus_armatus
ENSXCOG00000009867	smg6	99	68.118	ENSMZEG00005024736	smg6	98	68.869	Maylandia_zebra
ENSXCOG00000009867	smg6	54	50.387	ENSMGAG00000005401	-	81	50.166	Meleagris_gallopavo
ENSXCOG00000009867	smg6	99	65.016	ENSMMOG00000010883	smg6	98	65.397	Mola_mola
ENSXCOG00000009867	smg6	74	55.680	ENSMODG00000010622	SMG6	72	60.056	Monodelphis_domestica
ENSXCOG00000009867	smg6	99	65.956	ENSMALG00000001106	smg6	98	66.768	Monopterus_albus
ENSXCOG00000009867	smg6	74	54.560	MGP_CAROLIEiJ_G0016729	Smg6	98	62.881	Mus_caroli
ENSXCOG00000009867	smg6	74	54.560	ENSMUSG00000038290	Smg6	87	67.823	Mus_musculus
ENSXCOG00000009867	smg6	74	54.451	MGP_PahariEiJ_G0017866	Smg6	87	67.508	Mus_pahari
ENSXCOG00000009867	smg6	74	54.480	MGP_SPRETEiJ_G0017572	Smg6	87	67.508	Mus_spretus
ENSXCOG00000009867	smg6	74	55.076	ENSMPUG00000013046	SMG6	83	55.156	Mustela_putorius_furo
ENSXCOG00000009867	smg6	74	55.161	ENSMLUG00000005739	SMG6	72	59.889	Myotis_lucifugus
ENSXCOG00000009867	smg6	74	54.662	ENSNGAG00000007287	Smg6	89	58.371	Nannospalax_galili
ENSXCOG00000009867	smg6	99	68.404	ENSNBRG00000009511	smg6	100	69.075	Neolamprologus_brichardi
ENSXCOG00000009867	smg6	74	55.299	ENSNLEG00000017171	SMG6	100	60.571	Nomascus_leucogenys
ENSXCOG00000009867	smg6	74	55.164	ENSMEUG00000015804	SMG6	88	53.763	Notamacropus_eugenii
ENSXCOG00000009867	smg6	52	66.111	ENSOPRG00000000579	SMG6	87	51.407	Ochotona_princeps
ENSXCOG00000009867	smg6	74	48.958	ENSODEG00000008038	SMG6	81	54.491	Octodon_degus
ENSXCOG00000009867	smg6	99	68.463	ENSONIG00000005594	smg6	98	74.005	Oreochromis_niloticus
ENSXCOG00000009867	smg6	99	64.569	ENSORLG00000003317	smg6	98	65.180	Oryzias_latipes
ENSXCOG00000009867	smg6	99	65.217	ENSORLG00020015343	smg6	98	65.830	Oryzias_latipes_hni
ENSXCOG00000009867	smg6	99	65.037	ENSORLG00015020454	smg6	98	65.648	Oryzias_latipes_hsok
ENSXCOG00000009867	smg6	99	66.032	ENSOMEG00000010838	smg6	98	66.380	Oryzias_melastigma
ENSXCOG00000009867	smg6	74	55.032	ENSOGAG00000004483	SMG6	83	54.836	Otolemur_garnettii
ENSXCOG00000009867	smg6	74	55.351	ENSOARG00000015076	SMG6	85	55.164	Ovis_aries
ENSXCOG00000009867	smg6	74	55.175	ENSPPAG00000043296	SMG6	72	59.889	Pan_paniscus
ENSXCOG00000009867	smg6	74	55.048	ENSPPRG00000014581	SMG6	83	55.136	Panthera_pardus
ENSXCOG00000009867	smg6	74	55.104	ENSPTRG00000008544	SMG6	100	60.571	Pan_troglodytes
ENSXCOG00000009867	smg6	74	55.024	ENSPANG00000024588	SMG6	72	59.796	Papio_anubis
ENSXCOG00000009867	smg6	68	52.318	ENSPSIG00000006660	SMG6	83	52.063	Pelodiscus_sinensis
ENSXCOG00000009867	smg6	93	78.541	ENSPMGG00000000844	smg6	97	78.541	Periophthalmus_magnuspinnatus
ENSXCOG00000009867	smg6	74	54.988	ENSPEMG00000020707	Smg6	91	58.447	Peromyscus_maniculatus_bairdii
ENSXCOG00000009867	smg6	99	90.572	ENSPFOG00000012035	smg6	99	90.532	Poecilia_formosa
ENSXCOG00000009867	smg6	99	91.247	ENSPLAG00000017660	smg6	98	90.932	Poecilia_latipinna
ENSXCOG00000009867	smg6	99	90.572	ENSPMEG00000000258	smg6	98	91.058	Poecilia_mexicana
ENSXCOG00000009867	smg6	99	90.875	ENSPREG00000010066	smg6	98	90.371	Poecilia_reticulata
ENSXCOG00000009867	smg6	74	51.386	ENSPPYG00000007790	SMG6	72	55.239	Pongo_abelii
ENSXCOG00000009867	smg6	71	61.374	ENSPCAG00000000552	SMG6	71	56.355	Procavia_capensis
ENSXCOG00000009867	smg6	74	50.799	ENSPVAG00000002159	SMG6	79	52.578	Pteropus_vampyrus
ENSXCOG00000009867	smg6	93	67.852	ENSPNYG00000024151	smg6	100	68.660	Pundamilia_nyererei
ENSXCOG00000009867	smg6	84	61.893	ENSPNAG00000015480	smg6	98	52.684	Pygocentrus_nattereri
ENSXCOG00000009867	smg6	74	54.140	ENSRNOG00000003041	Smg6	97	62.881	Rattus_norvegicus
ENSXCOG00000009867	smg6	74	55.060	ENSRROG00000030423	SMG6	100	60.421	Rhinopithecus_roxellana
ENSXCOG00000009867	smg6	74	54.980	ENSSBOG00000022518	SMG6	76	55.838	Saimiri_boliviensis_boliviensis
ENSXCOG00000009867	smg6	76	54.595	ENSSHAG00000010045	SMG6	73	59.561	Sarcophilus_harrisii
ENSXCOG00000009867	smg6	91	55.234	ENSSFOG00015005436	smg6	87	55.356	Scleropages_formosus
ENSXCOG00000009867	smg6	99	67.336	ENSSMAG00000019777	smg6	98	67.518	Scophthalmus_maximus
ENSXCOG00000009867	smg6	99	70.595	ENSSDUG00000016412	smg6	98	71.394	Seriola_dumerili
ENSXCOG00000009867	smg6	91	70.492	ENSSLDG00000020747	smg6	98	71.288	Seriola_lalandi_dorsalis
ENSXCOG00000009867	smg6	74	54.399	ENSSPUG00000007152	SMG6	72	58.889	Sphenodon_punctatus
ENSXCOG00000009867	smg6	99	70.787	ENSSPAG00000015633	smg6	98	71.666	Stegastes_partitus
ENSXCOG00000009867	smg6	74	55.449	ENSSSCG00000017826	SMG6	83	55.573	Sus_scrofa
ENSXCOG00000009867	smg6	82	51.566	ENSTGUG00000005836	SMG6	88	53.050	Taeniopygia_guttata
ENSXCOG00000009867	smg6	92	65.214	ENSTRUG00000000358	smg6	98	65.477	Takifugu_rubripes
ENSXCOG00000009867	smg6	90	72.351	ENSTNIG00000016164	smg6	98	70.770	Tetraodon_nigroviridis
ENSXCOG00000009867	smg6	71	62.371	ENSTBEG00000011424	SMG6	69	62.887	Tupaia_belangeri
ENSXCOG00000009867	smg6	65	56.848	ENSTTRG00000001175	SMG6	74	57.143	Tursiops_truncatus
ENSXCOG00000009867	smg6	74	55.104	ENSUAMG00000025152	SMG6	85	55.004	Ursus_americanus
ENSXCOG00000009867	smg6	74	54.996	ENSUMAG00000009306	SMG6	85	54.976	Ursus_maritimus
ENSXCOG00000009867	smg6	60	95.833	ENSVPAG00000000225	SMG6	70	95.833	Vicugna_pacos
ENSXCOG00000009867	smg6	74	55.610	ENSVVUG00000021727	SMG6	84	55.629	Vulpes_vulpes
ENSXCOG00000009867	smg6	99	94.710	ENSXMAG00000010321	smg6	98	94.710	Xiphophorus_maculatus