EuRBPDB

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  • Description
  • RBDs
  • Transcripts
  • Gene Model
  • PPI
  • Paralogs
  • Orthologs
Description
Ensembl ID
ENSXCOG00000010068 (Gene tree)
Gene ID
-
Gene Symbol
rpa1
Alias
wu:fi14b08|zgc:55337|zgc:77092
Full Name
replication protein A1
Gene Type
protein_coding
Species
Xiphophorus_couchianus
Status
putative
Strand
Plus strand
Length
21829 bases
Position
chrKQ557210.1:5024230-5046058
Accession
ZDB-GENE-030912-3
RBP type
canonical RBP
Summary
-
RNA binding domains(RBDs)
Protein IDDomain Pfam IDE-value Domain number Total number
ENSXCOP00000013302tRNA_anti-codonPF01336.251.4e-1411
ENSXCOP00000013311tRNA_anti-codonPF01336.251.5e-1411
ENSXCOP00000013308tRNA_anti-codonPF01336.251.6e-1411
Transcripts
Transcript IDNameLengthRefSeq ID Protein IDLengthRefSeq IDUniportKB ID
ENSXCOT00000013475-1764-ENSXCOP00000013311587 (aa)--
ENSXCOT00000013472-1770-ENSXCOP00000013308589 (aa)--
ENSXCOT00000013466-1728-ENSXCOP00000013302575 (aa)--
Gene Model
Click here to download ENSXCOG00000010068's gene model file
Protein-Protein Interaction (PPI)

Clik here to download ENSXCOG00000010068's network
Paralogs
Ensembl IDGene SymbolCoverageIdentiy ParalogGene SymbolCoverageIdentiy
ENSXCOG00000010068rpa19361.080ENSXCOG00000009899-9461.266
Orthologs
Ensembl IDGene SymbolCoverageIdentiy OrthologGene SymbolCoverageIdentiy Species
ENSXCOG00000010068rpa19483.692ENSAPOG00000011658rpa19383.692Acanthochromis_polyacanthus
ENSXCOG00000010068rpa18869.925ENSAPOG00000019409RPA17569.925Acanthochromis_polyacanthus
ENSXCOG00000010068rpa19461.759ENSAMEG00000007706RPA19360.590Ailuropoda_melanoleuca
ENSXCOG00000010068rpa19461.622ENSACIG00000012881RPA19461.622Amphilophus_citrinellus
ENSXCOG00000010068rpa18483.402ENSACIG00000007277rpa18883.402Amphilophus_citrinellus
ENSXCOG00000010068rpa19458.404ENSAOCG00000009003RPA19457.990Amphiprion_ocellaris
ENSXCOG00000010068rpa19482.975ENSAOCG00000023376rpa19382.975Amphiprion_ocellaris
ENSXCOG00000010068rpa19483.154ENSAPEG00000008634rpa19383.154Amphiprion_percula
ENSXCOG00000010068rpa18970.098ENSAPEG00000019132RPA17970.098Amphiprion_percula
ENSXCOG00000010068rpa19382.430ENSATEG00000022024rpa19482.739Anabas_testudineus
ENSXCOG00000010068rpa19458.206ENSATEG00000006443RPA19457.307Anabas_testudineus
ENSXCOG00000010068rpa19453.577ENSAPLG00000012442RPA19553.261Anas_platyrhynchos
ENSXCOG00000010068rpa19456.250ENSACAG00000014490RPA19357.522Anolis_carolinensis
ENSXCOG00000010068rpa19462.342ENSANAG00000023456RPA19362.321Aotus_nancymaae
ENSXCOG00000010068rpa19461.724ENSACLG00000005223RPA19361.204Astatotilapia_calliptera
ENSXCOG00000010068rpa19282.987ENSACLG00000006640rpa19482.987Astatotilapia_calliptera
ENSXCOG00000010068rpa19475.936ENSAMXG00000008418rpa19376.292Astyanax_mexicanus
ENSXCOG00000010068rpa19461.261ENSBTAG00000009711RPA19360.105Bos_taurus
ENSXCOG00000010068rpa17232.067WBGene00017546rpa-16531.787Caenorhabditis_elegans
ENSXCOG00000010068rpa19460.830ENSCJAG00000001848RPA19161.429Callithrix_jacchus
ENSXCOG00000010068rpa19560.558ENSCAFG00000019249RPA19360.733Canis_familiaris
ENSXCOG00000010068rpa19560.558ENSCAFG00020009847RPA19360.733Canis_lupus_dingo
ENSXCOG00000010068rpa19460.830ENSCHIG00000026308RPA19459.689Capra_hircus
ENSXCOG00000010068rpa19460.682ENSTSYG00000003482-9359.408Carlito_syrichta
ENSXCOG00000010068rpa19461.802ENSCPOG00000000035RPA19360.453Cavia_porcellus
ENSXCOG00000010068rpa19450.542ENSCCAG00000010981RPA19051.071Cebus_capucinus
ENSXCOG00000010068rpa19457.401ENSCLAG00000015045-9356.370Chinchilla_lanigera
ENSXCOG00000010068rpa19460.901ENSCLAG00000005185-9359.756Chinchilla_lanigera
ENSXCOG00000010068rpa19451.532ENSCSAG00000013833RPA19250.697Chlorocebus_sabaeus
ENSXCOG00000010068rpa17068.550ENSCHOG00000009454-9268.550Choloepus_hoffmanni
ENSXCOG00000010068rpa19460.107ENSCHOG00000013540-9460.107Choloepus_hoffmanni
ENSXCOG00000010068rpa19461.664ENSCPBG00000020377RPA19461.567Chrysemys_picta_bellii
ENSXCOG00000010068rpa19542.707ENSCING00000023482-9441.783Ciona_intestinalis
ENSXCOG00000010068rpa19461.808ENSCANG00000030911RPA19461.081Colobus_angolensis_palliatus
ENSXCOG00000010068rpa19560.104ENSCGRG00001008197Rpa19360.104Cricetulus_griseus_chok1gshd
ENSXCOG00000010068rpa17962.055ENSCGRG00000000582Rpa19362.474Cricetulus_griseus_crigri
ENSXCOG00000010068rpa19677.739ENSCSEG00000013066rpa19577.739Cynoglossus_semilaevis
ENSXCOG00000010068rpa19454.017ENSCSEG00000012726RPA19355.273Cynoglossus_semilaevis
ENSXCOG00000010068rpa19569.249ENSCVAG00000013446-8469.249Cyprinodon_variegatus
ENSXCOG00000010068rpa19487.766ENSCVAG00000019431rpa19487.214Cyprinodon_variegatus
ENSXCOG00000010068rpa19573.097ENSDARG00000003938rpa19473.097Danio_rerio
ENSXCOG00000010068rpa19462.050ENSDNOG00000017218RPA19161.896Dasypus_novemcinctus
ENSXCOG00000010068rpa19462.410ENSDORG00000006199Rpa19361.217Dipodomys_ordii
ENSXCOG00000010068rpa19541.724FBgn0010173RpA-709342.783Drosophila_melanogaster
ENSXCOG00000010068rpa17772.308ENSETEG00000017608RPA17672.308Echinops_telfairi
ENSXCOG00000010068rpa19461.957ENSEASG00005009372RPA19361.698Equus_asinus_asinus
ENSXCOG00000010068rpa19560.348ENSECAG00000023886RPA19360.348Equus_caballus
ENSXCOG00000010068rpa16768.394ENSEEUG00000002186-6368.394Erinaceus_europaeus
ENSXCOG00000010068rpa18759.259ENSELUG00000006136RPA19559.491Esox_lucius
ENSXCOG00000010068rpa19478.716ENSELUG00000021071rpa19376.950Esox_lucius
ENSXCOG00000010068rpa19461.041ENSFCAG00000006306RPA19161.210Felis_catus
ENSXCOG00000010068rpa19462.298ENSFALG00000006575RPA19361.391Ficedula_albicollis
ENSXCOG00000010068rpa19461.828ENSFDAG00000007720RPA19360.659Fukomys_damarensis
ENSXCOG00000010068rpa19488.099ENSFHEG00000003580rpa19388.099Fundulus_heteroclitus
ENSXCOG00000010068rpa19475.315ENSGMOG00000010382rpa19375.315Gadus_morhua
ENSXCOG00000010068rpa19461.372ENSGALG00000003072RPA19360.070Gallus_gallus
ENSXCOG00000010068rpa18869.307ENSGAFG00000020953RPA19457.398Gambusia_affinis
ENSXCOG00000010068rpa19494.982ENSGAFG00000012916rpa19394.982Gambusia_affinis
ENSXCOG00000010068rpa19977.066ENSGACG00000010856rpa19877.066Gasterosteus_aculeatus
ENSXCOG00000010068rpa19460.971ENSGAGG00000013611RPA19360.105Gopherus_agassizii
ENSXCOG00000010068rpa19462.362ENSGGOG00000014186RPA19062.569Gorilla_gorilla
ENSXCOG00000010068rpa19555.516ENSHBUG00000009348RPA19357.196Haplochromis_burtoni
ENSXCOG00000010068rpa19484.794ENSHBUG00000017773rpa19384.794Haplochromis_burtoni
ENSXCOG00000010068rpa19461.261ENSHGLG00000008846RPA19360.279Heterocephalus_glaber_female
ENSXCOG00000010068rpa19353.616ENSHGLG00100002005-9553.521Heterocephalus_glaber_male
ENSXCOG00000010068rpa19461.261ENSHGLG00100017755-9360.279Heterocephalus_glaber_male
ENSXCOG00000010068rpa19457.477ENSHGLG00100000799-9356.446Heterocephalus_glaber_male
ENSXCOG00000010068rpa19444.364ENSHCOG00000000351RPA18944.364Hippocampus_comes
ENSXCOG00000010068rpa19472.077ENSHCOG00000001401rpa19371.902Hippocampus_comes
ENSXCOG00000010068rpa19474.113ENSIPUG00000004400rpa19374.113Ictalurus_punctatus
ENSXCOG00000010068rpa19059.740ENSSTOG00000022475RPA19059.740Ictidomys_tridecemlineatus
ENSXCOG00000010068rpa19561.319ENSJJAG00000000876Rpa19362.118Jaculus_jaculus
ENSXCOG00000010068rpa19679.275ENSKMAG00000005605rpa19579.793Kryptolebias_marmoratus
ENSXCOG00000010068rpa19460.219ENSKMAG00000000234RPA19359.717Kryptolebias_marmoratus
ENSXCOG00000010068rpa19479.574ENSLBEG00000021604rpa19379.574Labrus_bergylta
ENSXCOG00000010068rpa19469.307ENSLBEG00000002281RPA18069.307Labrus_bergylta
ENSXCOG00000010068rpa17859.653ENSLACG00000007210RPA19359.653Latimeria_chalumnae
ENSXCOG00000010068rpa19469.763ENSLOCG00000006397rpa19369.489Lepisosteus_oculatus
ENSXCOG00000010068rpa19659.524ENSLAFG00000015354RPA19459.524Loxodonta_africana
ENSXCOG00000010068rpa18259.229ENSMFAG00000036138-9859.237Macaca_fascicularis
ENSXCOG00000010068rpa19461.470ENSMMUG00000011604-9261.470Macaca_mulatta
ENSXCOG00000010068rpa19456.962ENSMMUG00000002442-9355.594Macaca_mulatta
ENSXCOG00000010068rpa19560.808ENSMNEG00000031632-9460.808Macaca_nemestrina
ENSXCOG00000010068rpa19453.959ENSMNEG00000029837-9054.029Macaca_nemestrina
ENSXCOG00000010068rpa19458.036ENSMLEG00000038768-9358.407Mandrillus_leucophaeus
ENSXCOG00000010068rpa19482.975ENSMAMG00000017993rpa19382.975Mastacembelus_armatus
ENSXCOG00000010068rpa18868.844ENSMAMG00000020097RPA17868.317Mastacembelus_armatus
ENSXCOG00000010068rpa19484.794ENSMZEG00005007551rpa19384.794Maylandia_zebra
ENSXCOG00000010068rpa19461.724ENSMZEG00005024731RPA19361.204Maylandia_zebra
ENSXCOG00000010068rpa19461.191ENSMGAG00000005315RPA19260.105Meleagris_gallopavo
ENSXCOG00000010068rpa19460.791ENSMAUG00000010474Rpa19361.497Mesocricetus_auratus
ENSXCOG00000010068rpa19660.239ENSMICG00000012867RPA19262.081Microcebus_murinus
ENSXCOG00000010068rpa19560.522ENSMOCG00000013019Rpa19360.522Microtus_ochrogaster
ENSXCOG00000010068rpa19581.475ENSMMOG00000014292rpa19482.149Mola_mola
ENSXCOG00000010068rpa19560.035ENSMMOG00000010868RPA19360.035Mola_mola
ENSXCOG00000010068rpa19461.664ENSMODG00000010549RPA19061.664Monodelphis_domestica
ENSXCOG00000010068rpa19585.064ENSMALG00000011453rpa19586.372Monopterus_albus
ENSXCOG00000010068rpa18768.812ENSMALG00000001208RPA17268.812Monopterus_albus
ENSXCOG00000010068rpa19560.832MGP_CAROLIEiJ_G0016734Rpa19360.832Mus_caroli
ENSXCOG00000010068rpa19558.545ENSMUSG00000000751Rpa19558.545Mus_musculus
ENSXCOG00000010068rpa19461.854MGP_PahariEiJ_G0017871Rpa19360.862Mus_pahari
ENSXCOG00000010068rpa19558.446MGP_SPRETEiJ_G0017577Rpa19558.446Mus_spretus
ENSXCOG00000010068rpa19560.522ENSMPUG00000013119RPA19360.522Mustela_putorius_furo
ENSXCOG00000010068rpa19460.791ENSMLUG00000006113RPA19060.784Myotis_lucifugus
ENSXCOG00000010068rpa19461.511ENSNGAG00000004522Rpa19060.993Nannospalax_galili
ENSXCOG00000010068rpa18863.198ENSNBRG00000009672RPA18663.198Neolamprologus_brichardi
ENSXCOG00000010068rpa19382.617ENSNBRG00000020595rpa19482.617Neolamprologus_brichardi
ENSXCOG00000010068rpa19461.939ENSNLEG00000017149RPA19161.896Nomascus_leucogenys
ENSXCOG00000010068rpa19452.080ENSMEUG00000006714RPA19252.151Notamacropus_eugenii
ENSXCOG00000010068rpa19459.364ENSODEG00000009038RPA19159.823Octodon_degus
ENSXCOG00000010068rpa19483.538ENSONIG00000013135rpa19383.538Oreochromis_niloticus
ENSXCOG00000010068rpa19462.523ENSOANG00000010880RPA19461.579Ornithorhynchus_anatinus
ENSXCOG00000010068rpa19558.043ENSOCUG00000001504RPA19358.043Oryctolagus_cuniculus
ENSXCOG00000010068rpa19456.639ENSORLG00000003368RPA19455.628Oryzias_latipes
ENSXCOG00000010068rpa19483.124ENSORLG00000004856rpa19383.124Oryzias_latipes
ENSXCOG00000010068rpa19462.727ENSORLG00020015284RPA18462.727Oryzias_latipes_hni
ENSXCOG00000010068rpa19483.483ENSORLG00020008980rpa19383.483Oryzias_latipes_hni
ENSXCOG00000010068rpa19483.483ENSORLG00015013982rpa19383.483Oryzias_latipes_hsok
ENSXCOG00000010068rpa19457.290ENSORLG00015020383RPA19356.240Oryzias_latipes_hsok
ENSXCOG00000010068rpa17265.865ENSORLG00015005867-9565.865Oryzias_latipes_hsok
ENSXCOG00000010068rpa19481.541ENSOMEG00000004704rpa19381.541Oryzias_melastigma
ENSXCOG00000010068rpa19755.390ENSOMEG00000011040RPA19855.721Oryzias_melastigma
ENSXCOG00000010068rpa19461.331ENSOGAG00000005581-9360.174Otolemur_garnettii
ENSXCOG00000010068rpa16874.648ENSOGAG00000029379-8874.648Otolemur_garnettii
ENSXCOG00000010068rpa19461.261ENSOARG00000014479RPA19360.453Ovis_aries
ENSXCOG00000010068rpa19462.298ENSPPAG00000039680RPA19361.257Pan_paniscus
ENSXCOG00000010068rpa19461.041ENSPPRG00000011807RPA19161.032Panthera_pardus
ENSXCOG00000010068rpa19461.041ENSPTIG00000007898RPA19161.032Panthera_tigris_altaica
ENSXCOG00000010068rpa19462.478ENSPTRG00000008539RPA19361.431Pan_troglodytes
ENSXCOG00000010068rpa19461.649ENSPANG00000024592RPA19161.634Papio_anubis
ENSXCOG00000010068rpa19872.617ENSPKIG00000008053rpa19572.964Paramormyrops_kingsleyae
ENSXCOG00000010068rpa19462.342ENSPSIG00000015617RPA19362.143Pelodiscus_sinensis
ENSXCOG00000010068rpa19578.755ENSPMGG00000011589rpa19378.755Periophthalmus_magnuspinnatus
ENSXCOG00000010068rpa19460.000ENSPMGG00000000543RPA19461.877Periophthalmus_magnuspinnatus
ENSXCOG00000010068rpa19462.657ENSPEMG00000021061Rpa19361.458Peromyscus_maniculatus_bairdii
ENSXCOG00000010068rpa19461.372ENSPCIG00000019049RPA19061.360Phascolarctos_cinereus
ENSXCOG00000010068rpa19494.444ENSPFOG00000003987rpa19394.444Poecilia_formosa
ENSXCOG00000010068rpa19494.265ENSPLAG00000004984rpa19394.265Poecilia_latipinna
ENSXCOG00000010068rpa19558.265ENSPLAG00000008844-9658.265Poecilia_latipinna
ENSXCOG00000010068rpa19557.536ENSPMEG00000003627-9657.938Poecilia_mexicana
ENSXCOG00000010068rpa19494.624ENSPMEG00000020602rpa19394.624Poecilia_mexicana
ENSXCOG00000010068rpa19984.509ENSPREG00000010174rpa19984.509Poecilia_reticulata
ENSXCOG00000010068rpa18869.059ENSPREG00000010119RPA18369.059Poecilia_reticulata
ENSXCOG00000010068rpa19461.511ENSPCOG00000001799RPA19360.348Propithecus_coquereli
ENSXCOG00000010068rpa19560.000ENSPVAG00000002149RPA19259.825Pteropus_vampyrus
ENSXCOG00000010068rpa19461.552ENSPNYG00000024165RPA19361.037Pundamilia_nyererei
ENSXCOG00000010068rpa19485.152ENSPNYG00000016316rpa19385.152Pundamilia_nyererei
ENSXCOG00000010068rpa19567.321ENSPNAG00000008599rpa19466.607Pygocentrus_nattereri
ENSXCOG00000010068rpa19465.909ENSRNOG00000003123Rpa19360.627Rattus_norvegicus
ENSXCOG00000010068rpa19461.802ENSRBIG00000036587RPA19360.627Rhinopithecus_bieti
ENSXCOG00000010068rpa19555.401ENSRROG00000043278RPA19355.401Rhinopithecus_roxellana
ENSXCOG00000010068rpa19431.794YAR007CRFA19031.874Saccharomyces_cerevisiae
ENSXCOG00000010068rpa18962.049ENSSBOG00000030233RPA19162.879Saimiri_boliviensis_boliviensis
ENSXCOG00000010068rpa19461.441ENSSHAG00000007969RPA19260.801Sarcophilus_harrisii
ENSXCOG00000010068rpa19576.064ENSSFOG00015005362rpa19076.064Scleropages_formosus
ENSXCOG00000010068rpa18868.382ENSSMAG00000019746RPA17868.382Scophthalmus_maximus
ENSXCOG00000010068rpa19470.677ENSSDUG00000016358RPA18670.545Seriola_dumerili
ENSXCOG00000010068rpa19484.229ENSSDUG00000011949rpa19384.229Seriola_dumerili
ENSXCOG00000010068rpa19484.229ENSSLDG00000011806rpa19384.229Seriola_lalandi_dorsalis
ENSXCOG00000010068rpa18870.426ENSSLDG00000020784RPA17870.297Seriola_lalandi_dorsalis
ENSXCOG00000010068rpa18254.918ENSSARG00000007506RPA18353.877Sorex_araneus
ENSXCOG00000010068rpa19461.273ENSSPUG00000007223RPA19261.273Sphenodon_punctatus
ENSXCOG00000010068rpa19979.229ENSSPAG00000009903rpa19979.229Stegastes_partitus
ENSXCOG00000010068rpa19562.837ENSSPAG00000011165RPA19462.278Stegastes_partitus
ENSXCOG00000010068rpa19460.701ENSSSCG00000017822RPA19360.823Sus_scrofa
ENSXCOG00000010068rpa19461.511ENSTGUG00000005775RPA19361.150Taeniopygia_guttata
ENSXCOG00000010068rpa19468.010ENSTRUG00000000405RPA18467.822Takifugu_rubripes
ENSXCOG00000010068rpa19479.032ENSTRUG00000003616rpa19379.032Takifugu_rubripes
ENSXCOG00000010068rpa19480.877ENSTNIG00000016199rpa19381.338Tetraodon_nigroviridis
ENSXCOG00000010068rpa17068.059ENSTBEG00000002709RPA16868.059Tupaia_belangeri
ENSXCOG00000010068rpa19460.469ENSTTRG00000001169RPA19160.823Tursiops_truncatus
ENSXCOG00000010068rpa19071.154ENSUAMG00000015676RPA19871.154Ursus_americanus
ENSXCOG00000010068rpa19560.107ENSUMAG00000009328RPA19360.107Ursus_maritimus
ENSXCOG00000010068rpa19459.386ENSVPAG00000009443RPA19159.213Vicugna_pacos
ENSXCOG00000010068rpa19460.830ENSVVUG00000021715RPA19161.002Vulpes_vulpes
ENSXCOG00000010068rpa19464.260ENSXETG00000013538rpa19264.550Xenopus_tropicalis
ENSXCOG00000010068rpa19498.387ENSXMAG00000004102rpa19499.618Xiphophorus_maculatus
ENSXCOG00000010068rpa18869.059ENSXMAG00000010333RPA18069.059Xiphophorus_maculatus

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