EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSXCOG00000010424 (Gene tree)
Gene ID: -
Gene Symbol: srl
Alias: im:6899248|wu:fb94b10|zgc:153844
Full Name: sarcalumenin
Gene Type: protein_coding
Species: Xiphophorus_couchianus
Status: putative
Strand: Minus strand
Length: 8482 bases
Position: chrKQ557208.1:12807802-12816283
Accession: ZDB-GENE-061110-91
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSXCOP00000013770	MMR_HSR1	PF01926.23	1.4e-08	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSXCOT00000013939	-	1311	-	ENSXCOP00000013770	436 (aa)	-	-

Gene Model

Click here to download ENSXCOG00000010424's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSXCOG00000010424's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSXCOG00000010424	srl	97	79.433	ENSXCOG00000014584	SRL	94	79.433
ENSXCOG00000010424	srl	94	31.553	ENSXCOG00000001781	ehd1a	74	31.553
ENSXCOG00000010424	srl	90	32.152	ENSXCOG00000012882	-	71	31.313
ENSXCOG00000010424	srl	94	33.010	ENSXCOG00000008602	ehd2b	74	33.010

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSXCOG00000010424	srl	97	84.561	ENSG00000185739	SRL	98	84.561	Homo_sapiens
ENSXCOG00000010424	srl	97	95.487	ENSAPOG00000018093	srl	95	95.487	Acanthochromis_polyacanthus
ENSXCOG00000010424	srl	97	78.251	ENSAPOG00000012432	SRL	94	78.251	Acanthochromis_polyacanthus
ENSXCOG00000010424	srl	97	95.724	ENSACIG00000015799	srl	93	95.724	Amphilophus_citrinellus
ENSXCOG00000010424	srl	97	77.778	ENSACIG00000015419	SRL	94	77.778	Amphilophus_citrinellus
ENSXCOG00000010424	srl	97	95.724	ENSAOCG00000007574	srl	97	95.724	Amphiprion_ocellaris
ENSXCOG00000010424	srl	97	78.538	ENSAOCG00000017049	SRL	92	78.774	Amphiprion_ocellaris
ENSXCOG00000010424	srl	97	95.724	ENSAPEG00000006911	srl	89	95.724	Amphiprion_percula
ENSXCOG00000010424	srl	97	75.177	ENSAPEG00000006533	SRL	92	75.708	Amphiprion_percula
ENSXCOG00000010424	srl	97	95.962	ENSATEG00000024315	srl	89	95.962	Anabas_testudineus
ENSXCOG00000010424	srl	97	77.523	ENSATEG00000009643	SRL	50	77.752	Anabas_testudineus
ENSXCOG00000010424	srl	97	83.372	ENSACAG00000016380	SRL	79	83.372	Anolis_carolinensis
ENSXCOG00000010424	srl	97	76.376	ENSACLG00000024674	SRL	55	77.017	Astatotilapia_calliptera
ENSXCOG00000010424	srl	97	95.962	ENSACLG00000027685	srl	92	95.962	Astatotilapia_calliptera
ENSXCOG00000010424	srl	97	92.637	ENSAMXG00000018789	srl	83	92.637	Astyanax_mexicanus
ENSXCOG00000010424	srl	92	80.500	ENSAMXG00000038693	SRL	96	76.212	Astyanax_mexicanus
ENSXCOG00000010424	srl	96	85.714	ENSBTAG00000001078	SRL	53	85.714	Bos_taurus
ENSXCOG00000010424	srl	97	84.561	ENSCJAG00000019750	SRL	89	84.561	Callithrix_jacchus
ENSXCOG00000010424	srl	97	84.561	ENSCAFG00000019233	SRL	78	84.561	Canis_familiaris
ENSXCOG00000010424	srl	97	84.561	ENSCAFG00020025024	SRL	51	85.372	Canis_lupus_dingo
ENSXCOG00000010424	srl	96	85.714	ENSCHIG00000017927	SRL	52	85.714	Capra_hircus
ENSXCOG00000010424	srl	97	85.036	ENSTSYG00000007919	SRL	98	85.036	Carlito_syrichta
ENSXCOG00000010424	srl	97	85.273	ENSCPOG00000012643	SRL	89	85.273	Cavia_porcellus
ENSXCOG00000010424	srl	91	83.838	ENSCCAG00000032646	SRL	100	84.697	Cebus_capucinus
ENSXCOG00000010424	srl	97	84.561	ENSCATG00000032227	-	89	84.561	Cercocebus_atys
ENSXCOG00000010424	srl	97	85.036	ENSCLAG00000016242	SRL	89	85.036	Chinchilla_lanigera
ENSXCOG00000010424	srl	88	86.234	ENSCHOG00000001618	SRL	52	86.234	Choloepus_hoffmanni
ENSXCOG00000010424	srl	96	86.269	ENSCPBG00000026371	SRL	89	82.870	Chrysemys_picta_bellii
ENSXCOG00000010424	srl	90	62.087	ENSCING00000005231	-	88	62.087	Ciona_intestinalis
ENSXCOG00000010424	srl	97	84.561	ENSCANG00000035872	SRL	98	84.561	Colobus_angolensis_palliatus
ENSXCOG00000010424	srl	97	85.273	ENSCGRG00001016630	Srl	89	85.273	Cricetulus_griseus_chok1gshd
ENSXCOG00000010424	srl	97	85.273	ENSCGRG00000005458	Srl	89	85.273	Cricetulus_griseus_crigri
ENSXCOG00000010424	srl	97	95.012	ENSCSEG00000016151	srl	90	95.012	Cynoglossus_semilaevis
ENSXCOG00000010424	srl	99	75.632	ENSCSEG00000011866	SRL	87	75.862	Cynoglossus_semilaevis
ENSXCOG00000010424	srl	97	77.778	ENSCVAG00000022465	SRL	57	77.778	Cyprinodon_variegatus
ENSXCOG00000010424	srl	97	97.625	ENSCVAG00000003513	srl	91	97.625	Cyprinodon_variegatus
ENSXCOG00000010424	srl	87	78.385	ENSDARG00000112959	CABZ01072309.1	100	78.385	Danio_rerio
ENSXCOG00000010424	srl	97	92.637	ENSDARG00000104587	srl	90	92.637	Danio_rerio
ENSXCOG00000010424	srl	97	84.798	ENSDNOG00000011643	SRL	50	84.798	Dasypus_novemcinctus
ENSXCOG00000010424	srl	97	84.798	ENSDORG00000014807	Srl	89	84.798	Dipodomys_ordii
ENSXCOG00000010424	srl	85	65.775	ENSEBUG00000015937	srl	94	65.775	Eptatretus_burgeri
ENSXCOG00000010424	srl	96	85.000	ENSEASG00005000942	SRL	51	85.000	Equus_asinus_asinus
ENSXCOG00000010424	srl	98	83.916	ENSECAG00000024219	SRL	89	85.000	Equus_caballus
ENSXCOG00000010424	srl	96	91.667	ENSELUG00000015616	srl	89	88.710	Esox_lucius
ENSXCOG00000010424	srl	97	84.323	ENSFCAG00000022075	SRL	89	84.323	Felis_catus
ENSXCOG00000010424	srl	96	85.646	ENSFALG00000004328	SRL	59	85.646	Ficedula_albicollis
ENSXCOG00000010424	srl	97	85.273	ENSFDAG00000006199	SRL	89	85.273	Fukomys_damarensis
ENSXCOG00000010424	srl	97	78.622	ENSFHEG00000011854	SRL	94	78.860	Fundulus_heteroclitus
ENSXCOG00000010424	srl	97	97.387	ENSFHEG00000011239	srl	91	97.387	Fundulus_heteroclitus
ENSXCOG00000010424	srl	96	90.278	ENSGMOG00000014954	srl	95	90.278	Gadus_morhua
ENSXCOG00000010424	srl	96	85.714	ENSGALG00000038884	SRL	89	85.714	Gallus_gallus
ENSXCOG00000010424	srl	97	79.669	ENSGAFG00000016984	SRL	94	79.669	Gambusia_affinis
ENSXCOG00000010424	srl	97	98.575	ENSGAFG00000000010	srl	91	98.575	Gambusia_affinis
ENSXCOG00000010424	srl	96	91.435	ENSGACG00000011332	srl	95	91.435	Gasterosteus_aculeatus
ENSXCOG00000010424	srl	97	84.561	ENSGGOG00000011312	-	89	84.561	Gorilla_gorilla
ENSXCOG00000010424	srl	97	76.606	ENSHBUG00000015710	SRL	54	76.606	Haplochromis_burtoni
ENSXCOG00000010424	srl	97	95.962	ENSHBUG00000007581	srl	92	95.962	Haplochromis_burtoni
ENSXCOG00000010424	srl	97	85.036	ENSHGLG00000015271	SRL	89	85.036	Heterocephalus_glaber_female
ENSXCOG00000010424	srl	97	85.036	ENSHGLG00100019378	SRL	89	85.036	Heterocephalus_glaber_male
ENSXCOG00000010424	srl	97	96.200	ENSHCOG00000008687	srl	93	96.200	Hippocampus_comes
ENSXCOG00000010424	srl	95	72.115	ENSIPUG00000011609	SRL	90	72.115	Ictalurus_punctatus
ENSXCOG00000010424	srl	97	91.924	ENSIPUG00000012513	srl	90	91.924	Ictalurus_punctatus
ENSXCOG00000010424	srl	97	85.273	ENSSTOG00000021151	-	89	85.273	Ictidomys_tridecemlineatus
ENSXCOG00000010424	srl	97	85.036	ENSJJAG00000016400	Srl	89	85.036	Jaculus_jaculus
ENSXCOG00000010424	srl	99	95.128	ENSKMAG00000014115	srl	94	95.128	Kryptolebias_marmoratus
ENSXCOG00000010424	srl	97	78.014	ENSKMAG00000019537	SRL	96	78.014	Kryptolebias_marmoratus
ENSXCOG00000010424	srl	97	76.651	ENSLBEG00000013811	SRL	92	76.887	Labrus_bergylta
ENSXCOG00000010424	srl	97	95.487	ENSLBEG00000026643	srl	89	95.487	Labrus_bergylta
ENSXCOG00000010424	srl	97	85.748	ENSLACG00000002825	SRL	93	85.748	Latimeria_chalumnae
ENSXCOG00000010424	srl	97	91.449	ENSLOCG00000002644	srl	90	91.449	Lepisosteus_oculatus
ENSXCOG00000010424	srl	97	84.561	ENSMFAG00000037383	SRL	98	84.561	Macaca_fascicularis
ENSXCOG00000010424	srl	97	84.561	ENSMNEG00000019236	-	89	84.561	Macaca_nemestrina
ENSXCOG00000010424	srl	89	83.763	ENSMLEG00000032156	SRL	88	83.763	Mandrillus_leucophaeus
ENSXCOG00000010424	srl	97	95.249	ENSMAMG00000023322	srl	89	95.249	Mastacembelus_armatus
ENSXCOG00000010424	srl	97	76.484	ENSMAMG00000013756	SRL	51	76.484	Mastacembelus_armatus
ENSXCOG00000010424	srl	97	76.376	ENSMZEG00005004010	SRL	55	76.376	Maylandia_zebra
ENSXCOG00000010424	srl	97	95.962	ENSMZEG00005004548	srl	92	95.962	Maylandia_zebra
ENSXCOG00000010424	srl	96	85.714	ENSMGAG00000009342	SRL	87	89.275	Meleagris_gallopavo
ENSXCOG00000010424	srl	97	85.036	ENSMICG00000032307	SRL	89	85.036	Microcebus_murinus
ENSXCOG00000010424	srl	97	84.561	ENSMOCG00000008208	Srl	89	84.561	Microtus_ochrogaster
ENSXCOG00000010424	srl	97	94.062	ENSMMOG00000013970	srl	94	94.062	Mola_mola
ENSXCOG00000010424	srl	96	76.389	ENSMMOG00000021572	SRL	94	76.389	Mola_mola
ENSXCOG00000010424	srl	96	77.804	ENSMALG00000000670	SRL	98	77.804	Monopterus_albus
ENSXCOG00000010424	srl	97	94.774	ENSMALG00000005039	srl	93	94.774	Monopterus_albus
ENSXCOG00000010424	srl	97	85.511	MGP_CAROLIEiJ_G0020400	Srl	89	85.511	Mus_caroli
ENSXCOG00000010424	srl	97	85.511	ENSMUSG00000022519	Srl	89	85.511	Mus_musculus
ENSXCOG00000010424	srl	97	85.511	MGP_SPRETEiJ_G0021294	Srl	89	85.511	Mus_spretus
ENSXCOG00000010424	srl	97	84.561	ENSMPUG00000015025	SRL	51	84.561	Mustela_putorius_furo
ENSXCOG00000010424	srl	97	85.036	ENSMLUG00000030733	SRL	53	85.036	Myotis_lucifugus
ENSXCOG00000010424	srl	97	85.273	ENSNGAG00000019741	Srl	89	85.273	Nannospalax_galili
ENSXCOG00000010424	srl	97	96.200	ENSNBRG00000023775	srl	90	96.200	Neolamprologus_brichardi
ENSXCOG00000010424	srl	99	75.336	ENSNBRG00000002422	SRL	56	75.917	Neolamprologus_brichardi
ENSXCOG00000010424	srl	89	85.309	ENSNLEG00000029051	SRL	88	85.309	Nomascus_leucogenys
ENSXCOG00000010424	srl	97	85.511	ENSODEG00000013256	SRL	89	85.511	Octodon_degus
ENSXCOG00000010424	srl	97	95.962	ENSONIG00000005192	srl	89	95.962	Oreochromis_niloticus
ENSXCOG00000010424	srl	96	77.512	ENSORLG00000015064	SRL	92	77.512	Oryzias_latipes
ENSXCOG00000010424	srl	97	96.217	ENSORLG00000008291	srl	92	96.907	Oryzias_latipes
ENSXCOG00000010424	srl	96	77.751	ENSORLG00020018173	SRL	92	77.751	Oryzias_latipes_hni
ENSXCOG00000010424	srl	97	96.217	ENSORLG00020019784	srl	79	96.907	Oryzias_latipes_hni
ENSXCOG00000010424	srl	96	77.751	ENSORLG00015019063	SRL	92	77.751	Oryzias_latipes_hsok
ENSXCOG00000010424	srl	97	96.217	ENSORLG00015009342	srl	87	96.217	Oryzias_latipes_hsok
ENSXCOG00000010424	srl	96	76.102	ENSOMEG00000005682	SRL	50	76.157	Oryzias_melastigma
ENSXCOG00000010424	srl	97	96.927	ENSOMEG00000010006	srl	94	96.927	Oryzias_melastigma
ENSXCOG00000010424	srl	97	84.561	ENSOGAG00000029266	SRL	51	84.561	Otolemur_garnettii
ENSXCOG00000010424	srl	96	85.714	ENSOARG00000003074	SRL	53	85.714	Ovis_aries
ENSXCOG00000010424	srl	97	84.561	ENSPPAG00000024919	-	98	84.561	Pan_paniscus
ENSXCOG00000010424	srl	97	84.323	ENSPPRG00000010274	SRL	98	84.323	Panthera_pardus
ENSXCOG00000010424	srl	97	84.323	ENSPTIG00000015162	SRL	98	84.323	Panthera_tigris_altaica
ENSXCOG00000010424	srl	97	84.561	ENSPTRG00000007712	SRL	98	84.561	Pan_troglodytes
ENSXCOG00000010424	srl	97	84.561	ENSPANG00000013804	SRL	91	84.561	Papio_anubis
ENSXCOG00000010424	srl	97	92.671	ENSPKIG00000006405	srl	89	92.671	Paramormyrops_kingsleyae
ENSXCOG00000010424	srl	97	81.043	ENSPKIG00000024974	SRL	84	81.043	Paramormyrops_kingsleyae
ENSXCOG00000010424	srl	97	76.887	ENSPMGG00000023505	-	96	76.887	Periophthalmus_magnuspinnatus
ENSXCOG00000010424	srl	97	95.487	ENSPMGG00000021081	srl	91	95.487	Periophthalmus_magnuspinnatus
ENSXCOG00000010424	srl	97	85.036	ENSPEMG00000015842	Srl	89	85.036	Peromyscus_maniculatus_bairdii
ENSXCOG00000010424	srl	96	67.431	ENSPMAG00000004786	srl	99	67.431	Petromyzon_marinus
ENSXCOG00000010424	srl	96	85.952	ENSPCIG00000012128	SRL	92	85.952	Phascolarctos_cinereus
ENSXCOG00000010424	srl	97	96.074	ENSPFOG00000011408	srl	89	96.065	Poecilia_formosa
ENSXCOG00000010424	srl	97	98.812	ENSPLAG00000008017	srl	91	98.812	Poecilia_latipinna
ENSXCOG00000010424	srl	97	78.251	ENSPLAG00000002932	SRL	94	78.251	Poecilia_latipinna
ENSXCOG00000010424	srl	97	76.606	ENSPMEG00000005890	SRL	57	76.147	Poecilia_mexicana
ENSXCOG00000010424	srl	97	98.812	ENSPMEG00000006745	srl	91	98.812	Poecilia_mexicana
ENSXCOG00000010424	srl	97	99.050	ENSPREG00000007751	srl	93	99.050	Poecilia_reticulata
ENSXCOG00000010424	srl	97	78.960	ENSPREG00000000315	SRL	94	78.960	Poecilia_reticulata
ENSXCOG00000010424	srl	96	84.964	ENSPPYG00000007053	SRL	98	84.964	Pongo_abelii
ENSXCOG00000010424	srl	97	85.036	ENSPCOG00000023135	SRL	98	85.036	Propithecus_coquereli
ENSXCOG00000010424	srl	97	84.798	ENSPVAG00000006586	SRL	51	85.612	Pteropus_vampyrus
ENSXCOG00000010424	srl	97	76.376	ENSPNYG00000003423	SRL	54	76.376	Pundamilia_nyererei
ENSXCOG00000010424	srl	97	95.962	ENSPNYG00000001200	srl	92	95.962	Pundamilia_nyererei
ENSXCOG00000010424	srl	97	77.488	ENSPNAG00000007361	-	87	77.488	Pygocentrus_nattereri
ENSXCOG00000010424	srl	97	91.686	ENSPNAG00000023106	srl	90	91.686	Pygocentrus_nattereri
ENSXCOG00000010424	srl	97	84.561	ENSSBOG00000029273	SRL	89	84.561	Saimiri_boliviensis_boliviensis
ENSXCOG00000010424	srl	97	91.489	ENSSFOG00015009773	srl	90	91.489	Scleropages_formosus
ENSXCOG00000010424	srl	97	94.299	ENSSMAG00000016274	srl	92	94.299	Scophthalmus_maximus
ENSXCOG00000010424	srl	97	95.962	ENSSDUG00000010808	srl	93	95.962	Seriola_dumerili
ENSXCOG00000010424	srl	97	78.140	ENSSDUG00000009161	SRL	94	78.140	Seriola_dumerili
ENSXCOG00000010424	srl	97	95.962	ENSSLDG00000022024	srl	91	95.962	Seriola_lalandi_dorsalis
ENSXCOG00000010424	srl	97	77.854	ENSSLDG00000014601	SRL	96	78.440	Seriola_lalandi_dorsalis
ENSXCOG00000010424	srl	96	85.203	ENSSPUG00000016859	SRL	92	85.203	Sphenodon_punctatus
ENSXCOG00000010424	srl	97	79.196	ENSSPAG00000014254	SRL	94	79.196	Stegastes_partitus
ENSXCOG00000010424	srl	97	95.962	ENSSPAG00000019105	srl	89	95.962	Stegastes_partitus
ENSXCOG00000010424	srl	96	85.238	ENSSSCG00000007949	SRL	94	85.238	Sus_scrofa
ENSXCOG00000010424	srl	96	85.885	ENSTGUG00000003951	-	92	85.885	Taeniopygia_guttata
ENSXCOG00000010424	srl	83	86.464	ENSTGUG00000016121	-	100	86.464	Taeniopygia_guttata
ENSXCOG00000010424	srl	98	76.923	ENSTRUG00000013310	SRL	56	76.923	Takifugu_rubripes
ENSXCOG00000010424	srl	97	95.487	ENSTRUG00000006005	srl	90	95.487	Takifugu_rubripes
ENSXCOG00000010424	srl	97	95.487	ENSTNIG00000009739	srl	90	95.487	Tetraodon_nigroviridis
ENSXCOG00000010424	srl	97	84.561	ENSUAMG00000005701	SRL	52	84.561	Ursus_americanus
ENSXCOG00000010424	srl	97	84.561	ENSUMAG00000002574	SRL	52	84.561	Ursus_maritimus
ENSXCOG00000010424	srl	97	84.086	ENSXETG00000017313	srl	93	84.086	Xenopus_tropicalis
ENSXCOG00000010424	srl	97	76.835	ENSXMAG00000027598	SRL	59	76.835	Xiphophorus_maculatus
ENSXCOG00000010424	srl	97	99.525	ENSXMAG00000004625	srl	85	99.525	Xiphophorus_maculatus