EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSXCOG00000010695 (Gene tree)
Gene ID: -
Gene Symbol: zgc:171927
Alias: -
Full Name: zgc:171927
Gene Type: protein_coding
Species: Xiphophorus_couchianus
Status: putative
Strand: Plus strand
Length: 9184 bases
Position: chrKQ557210.1:30541455-30550638
Accession: ZDB-GENE-070822-21
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSXCOP00000016490	MMR_HSR1	PF01926.23	5.4e-05	1	1
ENSXCOP00000016199	MMR_HSR1	PF01926.23	5.5e-05	1	1
ENSXCOP00000016489	MMR_HSR1	PF01926.23	6.2e-05	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSXCOT00000016723	-	549	-	ENSXCOP00000016516	182 (aa)	-	-
ENSXCOT00000016696	-	615	-	ENSXCOP00000016489	204 (aa)	-	-
ENSXCOT00000016406	-	555	-	ENSXCOP00000016200	184 (aa)	-	-
ENSXCOT00000016405	-	651	-	ENSXCOP00000016199	216 (aa)	-	-
ENSXCOT00000016697	-	645	-	ENSXCOP00000016490	214 (aa)	-	-

Gene Model

Click here to download ENSXCOG00000010695's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSXCOG00000010695's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSXCOG00000010695	zgc:171927	91	36.500	ENSXCOG00000019921	rab7a	97	36.500
ENSXCOG00000010695	zgc:171927	54	48.214	ENSXCOG00000003192	-	53	48.214
ENSXCOG00000010695	zgc:171927	87	35.385	ENSXCOG00000009094	rab9b	95	35.385
ENSXCOG00000010695	zgc:171927	99	43.602	ENSXCOG00000009190	-	96	43.602
ENSXCOG00000010695	zgc:171927	71	31.757	ENSXCOG00000011229	rras2	81	32.432
ENSXCOG00000010695	zgc:171927	57	30.508	ENSXCOG00000013402	arl8ba	69	30.508
ENSXCOG00000010695	zgc:171927	79	40.373	ENSXCOG00000006259	rab6a	77	40.373
ENSXCOG00000010695	zgc:171927	86	36.757	ENSXCOG00000016452	rab22a	94	36.757
ENSXCOG00000010695	zgc:171927	82	32.941	ENSXCOG00000019281	rheb	88	32.941
ENSXCOG00000010695	zgc:171927	79	40.373	ENSXCOG00000015802	RAB41	76	40.373
ENSXCOG00000010695	zgc:171927	84	43.860	ENSXCOG00000006300	-	89	40.291
ENSXCOG00000010695	zgc:171927	96	37.850	ENSXCOG00000012032	-	90	37.850
ENSXCOG00000010695	zgc:171927	79	41.916	ENSXCOG00000013344	rab33a	59	41.916
ENSXCOG00000010695	zgc:171927	87	82.022	ENSXCOG00000010770	-	69	84.302
ENSXCOG00000010695	zgc:171927	79	40.123	ENSXCOG00000002232	rab6bb	78	40.123
ENSXCOG00000010695	zgc:171927	80	46.012	ENSXCOG00000016788	rab5c	87	43.684
ENSXCOG00000010695	zgc:171927	84	58.140	ENSXCOG00000019533	rab13	92	58.140
ENSXCOG00000010695	zgc:171927	57	30.833	ENSXCOG00000007236	arl4aa	59	30.833
ENSXCOG00000010695	zgc:171927	83	42.857	ENSXCOG00000000469	rab33ba	76	42.857
ENSXCOG00000010695	zgc:171927	99	43.128	ENSXCOG00000008042	-	96	43.128
ENSXCOG00000010695	zgc:171927	85	50.276	ENSXCOG00000001357	rab11a	69	50.276
ENSXCOG00000010695	zgc:171927	81	46.821	ENSXCOG00000018683	zgc:101559	74	46.821
ENSXCOG00000010695	zgc:171927	83	43.275	ENSXCOG00000003428	rab42a	78	43.275
ENSXCOG00000010695	zgc:171927	92	33.333	ENSXCOG00000007650	rras	96	33.333
ENSXCOG00000010695	zgc:171927	79	38.650	ENSXCOG00000020508	kras	96	32.353
ENSXCOG00000010695	zgc:171927	84	46.512	ENSXCOG00000004227	rab25b	96	40.952
ENSXCOG00000010695	zgc:171927	99	44.076	ENSXCOG00000004226	rab11al	98	43.056
ENSXCOG00000010695	zgc:171927	84	41.143	ENSXCOG00000008410	si:dkey-34d22.5	79	41.143
ENSXCOG00000010695	zgc:171927	92	80.208	ENSXCOG00000013842	rab1ab	95	80.208
ENSXCOG00000010695	zgc:171927	61	57.258	ENSXCOG00000009194	-	91	57.258
ENSXCOG00000010695	zgc:171927	79	36.145	ENSXCOG00000020575	RAB9A	80	35.429
ENSXCOG00000010695	zgc:171927	84	46.512	ENSXCOG00000019310	rab12	71	46.552
ENSXCOG00000010695	zgc:171927	60	32.800	ENSXCOG00000003892	arl4d	61	32.800
ENSXCOG00000010695	zgc:171927	98	42.857	ENSXCOG00000020125	rab25a	97	42.009
ENSXCOG00000010695	zgc:171927	84	46.199	ENSXCOG00000020121	rab5aa	81	45.455
ENSXCOG00000010695	zgc:171927	95	34.286	ENSXCOG00000009541	rab34a	79	34.286
ENSXCOG00000010695	zgc:171927	76	38.462	ENSXCOG00000011864	rab23	74	36.364
ENSXCOG00000010695	zgc:171927	89	35.519	ENSXCOG00000020608	hrasb	86	36.585
ENSXCOG00000010695	zgc:171927	83	36.994	ENSXCOG00000019054	rab9a	77	36.994
ENSXCOG00000010695	zgc:171927	83	43.275	ENSXCOG00000006807	rab39bb	80	43.275
ENSXCOG00000010695	zgc:171927	80	33.136	ENSXCOG00000016370	RAB29	82	33.136

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSXCOG00000010695	zgc:171927	100	94.860	ENSAPOG00000004980	-	100	94.860	Acanthochromis_polyacanthus
ENSXCOG00000010695	zgc:171927	100	93.925	ENSACIG00000009006	zgc:171927	100	93.925	Amphilophus_citrinellus
ENSXCOG00000010695	zgc:171927	74	89.677	ENSAOCG00000013808	-	93	98.347	Amphiprion_ocellaris
ENSXCOG00000010695	zgc:171927	100	92.056	ENSAOCG00000024149	-	100	92.056	Amphiprion_ocellaris
ENSXCOG00000010695	zgc:171927	100	92.523	ENSAPEG00000022171	zgc:171927	99	92.523	Amphiprion_percula
ENSXCOG00000010695	zgc:171927	100	93.458	ENSATEG00000003430	zgc:171927	100	93.458	Anabas_testudineus
ENSXCOG00000010695	zgc:171927	100	93.925	ENSACLG00000013734	-	100	93.925	Astatotilapia_calliptera
ENSXCOG00000010695	zgc:171927	100	78.605	ENSAMXG00000039486	zgc:171927	100	78.605	Astyanax_mexicanus
ENSXCOG00000010695	zgc:171927	100	89.720	ENSCSEG00000014416	zgc:171927	100	89.720	Cynoglossus_semilaevis
ENSXCOG00000010695	zgc:171927	100	94.860	ENSCVAG00000009222	zgc:171927	100	94.860	Cyprinodon_variegatus
ENSXCOG00000010695	zgc:171927	100	77.674	ENSDARG00000033056	zgc:171927	100	77.674	Danio_rerio
ENSXCOG00000010695	zgc:171927	100	78.704	ENSELUG00000011680	zgc:171927	100	78.704	Esox_lucius
ENSXCOG00000010695	zgc:171927	100	95.327	ENSFHEG00000022176	zgc:171927	100	95.327	Fundulus_heteroclitus
ENSXCOG00000010695	zgc:171927	98	78.673	ENSGMOG00000004979	-	97	78.673	Gadus_morhua
ENSXCOG00000010695	zgc:171927	98	97.608	ENSGAFG00000015702	zgc:171927	84	97.608	Gambusia_affinis
ENSXCOG00000010695	zgc:171927	100	91.121	ENSGACG00000013401	zgc:171927	99	91.121	Gasterosteus_aculeatus
ENSXCOG00000010695	zgc:171927	100	93.925	ENSHBUG00000002397	-	100	93.925	Haplochromis_burtoni
ENSXCOG00000010695	zgc:171927	100	93.925	ENSKMAG00000009856	zgc:171927	100	93.925	Kryptolebias_marmoratus
ENSXCOG00000010695	zgc:171927	100	91.121	ENSLBEG00000005791	-	100	91.121	Labrus_bergylta
ENSXCOG00000010695	zgc:171927	98	90.431	ENSLBEG00000027226	-	89	90.431	Labrus_bergylta
ENSXCOG00000010695	zgc:171927	100	70.968	ENSLOCG00000014692	zgc:171927	99	70.968	Lepisosteus_oculatus
ENSXCOG00000010695	zgc:171927	100	91.121	ENSMAMG00000020135	zgc:171927	100	91.121	Mastacembelus_armatus
ENSXCOG00000010695	zgc:171927	100	93.925	ENSMZEG00005024685	-	100	93.925	Maylandia_zebra
ENSXCOG00000010695	zgc:171927	100	88.318	ENSMMOG00000009833	-	100	88.318	Mola_mola
ENSXCOG00000010695	zgc:171927	100	90.187	ENSMALG00000021129	zgc:171927	100	90.187	Monopterus_albus
ENSXCOG00000010695	zgc:171927	100	93.458	ENSNBRG00000006202	zgc:171927	100	93.458	Neolamprologus_brichardi
ENSXCOG00000010695	zgc:171927	100	91.121	ENSORLG00000000602	zgc:171927	100	91.121	Oryzias_latipes
ENSXCOG00000010695	zgc:171927	100	91.121	ENSORLG00020021071	zgc:171927	100	91.121	Oryzias_latipes_hni
ENSXCOG00000010695	zgc:171927	100	91.121	ENSORLG00015010098	zgc:171927	100	91.121	Oryzias_latipes_hsok
ENSXCOG00000010695	zgc:171927	100	92.523	ENSOMEG00000020594	zgc:171927	100	92.523	Oryzias_melastigma
ENSXCOG00000010695	zgc:171927	100	97.664	ENSPFOG00000013810	zgc:171927	99	97.664	Poecilia_formosa
ENSXCOG00000010695	zgc:171927	100	96.262	ENSPLAG00000005869	zgc:171927	100	96.262	Poecilia_latipinna
ENSXCOG00000010695	zgc:171927	100	97.664	ENSPMEG00000022350	zgc:171927	100	97.664	Poecilia_mexicana
ENSXCOG00000010695	zgc:171927	100	98.131	ENSPREG00000017517	zgc:171927	100	98.131	Poecilia_reticulata
ENSXCOG00000010695	zgc:171927	100	93.925	ENSPNYG00000007520	-	100	93.925	Pundamilia_nyererei
ENSXCOG00000010695	zgc:171927	100	78.605	ENSPNAG00000029574	zgc:171927	100	78.605	Pygocentrus_nattereri
ENSXCOG00000010695	zgc:171927	100	77.209	ENSSFOG00015005464	zgc:171927	99	77.209	Scleropages_formosus
ENSXCOG00000010695	zgc:171927	100	90.654	ENSSMAG00000004416	-	100	90.654	Scophthalmus_maximus
ENSXCOG00000010695	zgc:171927	100	94.860	ENSSDUG00000004445	zgc:171927	100	94.860	Seriola_dumerili
ENSXCOG00000010695	zgc:171927	100	94.860	ENSSLDG00000018024	zgc:171927	100	94.860	Seriola_lalandi_dorsalis
ENSXCOG00000010695	zgc:171927	100	93.925	ENSSPAG00000013533	zgc:171927	100	93.925	Stegastes_partitus
ENSXCOG00000010695	zgc:171927	100	99.065	ENSXMAG00000004683	zgc:171927	100	99.065	Xiphophorus_maculatus