EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSXCOG00000011170 (Gene tree)
Gene ID: -
Gene Symbol: smarca5
Alias: SWI/SNF related|matrix associated|actin dependent regulator of chromatin A5|chunp6878|fb26d12|fb49g04|im:7146484|wu:fb26d12|wu:fb49g04|zgc:158434
Full Name: SWI/SNF related%2C matrix associated%2C actin dependent regulator of chromatin%2C subfamily a%2C member 5
Gene Type: protein_coding
Species: Xiphophorus_couchianus
Status: putative
Strand: Minus strand
Length: 8985 bases
Position: chrKQ557220.1:4043249-4052233
Accession: ZDB-GENE-021125-1
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSXCOP00000014712	ResIII	PF04851.15	4.8e-11	1	1
ENSXCOP00000014712	DEAD	PF00270.29	1.8e-06	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSXCOT00000014898	-	3027	-	ENSXCOP00000014712	1008 (aa)	-	-

Gene Model

Click here to download ENSXCOG00000011170's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSXCOG00000011170's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSXCOG00000011170	smarca5	54	38.095	ENSXCOG00000008336	chd1l	52	38.095
ENSXCOG00000011170	smarca5	62	36.400	ENSXCOG00000013840	hells	92	36.449

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSXCOG00000011170	smarca5	98	82.727	ENSG00000102038	SMARCA1	93	83.401	Homo_sapiens
ENSXCOG00000011170	smarca5	100	97.423	ENSAPOG00000016035	smarca5	99	97.712	Acanthochromis_polyacanthus
ENSXCOG00000011170	smarca5	98	81.936	ENSAMEG00000015218	SMARCA1	93	82.495	Ailuropoda_melanoleuca
ENSXCOG00000011170	smarca5	89	98.002	ENSACIG00000016982	smarca5	100	98.002	Amphilophus_citrinellus
ENSXCOG00000011170	smarca5	100	97.423	ENSAOCG00000015578	smarca5	97	97.423	Amphiprion_ocellaris
ENSXCOG00000011170	smarca5	100	97.423	ENSAPEG00000011117	smarca5	99	97.991	Amphiprion_percula
ENSXCOG00000011170	smarca5	100	97.222	ENSATEG00000012894	smarca5	97	97.222	Anabas_testudineus
ENSXCOG00000011170	smarca5	97	84.012	ENSAPLG00000013149	SMARCA1	99	84.012	Anas_platyrhynchos
ENSXCOG00000011170	smarca5	99	82.382	ENSACAG00000011376	SMARCA1	94	84.623	Anolis_carolinensis
ENSXCOG00000011170	smarca5	98	78.081	ENSANAG00000023098	SMARCA1	93	78.717	Aotus_nancymaae
ENSXCOG00000011170	smarca5	100	97.522	ENSACLG00000025356	smarca5	97	97.522	Astatotilapia_calliptera
ENSXCOG00000011170	smarca5	99	92.765	ENSAMXG00000005709	smarca5	97	92.666	Astyanax_mexicanus
ENSXCOG00000011170	smarca5	92	84.318	ENSAMXG00000011227	smarca1	99	85.404	Astyanax_mexicanus
ENSXCOG00000011170	smarca5	97	83.078	ENSBTAG00000002292	SMARCA1	91	83.351	Bos_taurus
ENSXCOG00000011170	smarca5	98	63.300	WBGene00002169	isw-1	95	63.880	Caenorhabditis_elegans
ENSXCOG00000011170	smarca5	97	83.401	ENSCJAG00000002868	SMARCA1	93	83.401	Callithrix_jacchus
ENSXCOG00000011170	smarca5	98	73.585	ENSCAFG00000018673	SMARCA1	99	75.293	Canis_familiaris
ENSXCOG00000011170	smarca5	98	82.929	ENSCAFG00020001751	SMARCA1	93	83.503	Canis_lupus_dingo
ENSXCOG00000011170	smarca5	98	82.776	ENSCHIG00000009837	SMARCA1	92	83.096	Capra_hircus
ENSXCOG00000011170	smarca5	98	82.929	ENSTSYG00000004240	SMARCA1	94	84.372	Carlito_syrichta
ENSXCOG00000011170	smarca5	98	81.325	ENSCPOG00000013601	SMARCA1	93	81.883	Cavia_porcellus
ENSXCOG00000011170	smarca5	98	80.000	ENSCCAG00000030817	SMARCA1	93	80.652	Cebus_capucinus
ENSXCOG00000011170	smarca5	96	83.747	ENSCATG00000015921	SMARCA1	93	82.394	Cercocebus_atys
ENSXCOG00000011170	smarca5	98	82.020	ENSCLAG00000002171	SMARCA1	93	82.587	Chinchilla_lanigera
ENSXCOG00000011170	smarca5	98	82.727	ENSCSAG00000008460	SMARCA1	93	83.401	Chlorocebus_sabaeus
ENSXCOG00000011170	smarca5	98	83.992	ENSCPBG00000001146	SMARCA1	93	84.318	Chrysemys_picta_bellii
ENSXCOG00000011170	smarca5	99	73.831	ENSCING00000004110	swi/snf	99	73.518	Ciona_intestinalis
ENSXCOG00000011170	smarca5	99	73.366	ENSCSAVG00000004620	-	99	75.727	Ciona_savignyi
ENSXCOG00000011170	smarca5	98	82.828	ENSCANG00000007183	SMARCA1	93	83.503	Colobus_angolensis_palliatus
ENSXCOG00000011170	smarca5	98	81.818	ENSCGRG00001010776	Smarca1	93	82.383	Cricetulus_griseus_chok1gshd
ENSXCOG00000011170	smarca5	97	81.358	ENSCGRG00000015301	Smarca1	97	81.481	Cricetulus_griseus_crigri
ENSXCOG00000011170	smarca5	100	96.825	ENSCSEG00000000328	smarca5	97	96.825	Cynoglossus_semilaevis
ENSXCOG00000011170	smarca5	100	99.206	ENSCVAG00000008668	smarca5	99	99.410	Cyprinodon_variegatus
ENSXCOG00000011170	smarca5	100	92.270	ENSDARG00000052348	smarca5	97	92.170	Danio_rerio
ENSXCOG00000011170	smarca5	97	82.482	ENSDARG00000012776	smarca1	96	82.482	Danio_rerio
ENSXCOG00000011170	smarca5	96	83.540	ENSDNOG00000004315	SMARCA1	91	84.305	Dasypus_novemcinctus
ENSXCOG00000011170	smarca5	96	83.540	ENSDORG00000009270	Smarca1	90	84.305	Dipodomys_ordii
ENSXCOG00000011170	smarca5	98	74.747	FBgn0011604	Iswi	99	72.260	Drosophila_melanogaster
ENSXCOG00000011170	smarca5	80	81.818	ENSETEG00000017426	SMARCA1	83	81.818	Echinops_telfairi
ENSXCOG00000011170	smarca5	99	80.754	ENSEBUG00000001239	smarca5	99	80.536	Eptatretus_burgeri
ENSXCOG00000011170	smarca5	98	78.169	ENSEASG00005008218	SMARCA1	99	79.453	Equus_asinus_asinus
ENSXCOG00000011170	smarca5	98	82.828	ENSECAG00000012106	SMARCA1	92	83.401	Equus_caballus
ENSXCOG00000011170	smarca5	79	84.106	ENSEEUG00000014927	SMARCA1	80	84.106	Erinaceus_europaeus
ENSXCOG00000011170	smarca5	97	84.168	ENSELUG00000010515	smarca1	96	84.168	Esox_lucius
ENSXCOG00000011170	smarca5	98	82.828	ENSFCAG00000018496	SMARCA1	93	83.401	Felis_catus
ENSXCOG00000011170	smarca5	91	85.011	ENSFALG00000000209	SMARCA1	98	85.011	Ficedula_albicollis
ENSXCOG00000011170	smarca5	96	82.209	ENSFDAG00000009818	SMARCA1	94	82.932	Fukomys_damarensis
ENSXCOG00000011170	smarca5	100	98.810	ENSFHEG00000007687	smarca5	96	98.810	Fundulus_heteroclitus
ENSXCOG00000011170	smarca5	95	84.807	ENSGALG00000008431	SMARCA1	95	84.807	Gallus_gallus
ENSXCOG00000011170	smarca5	100	99.802	ENSGAFG00000017731	smarca5	97	99.802	Gambusia_affinis
ENSXCOG00000011170	smarca5	96	84.465	ENSGAGG00000023575	SMARCA1	99	84.465	Gopherus_agassizii
ENSXCOG00000011170	smarca5	72	96.000	ENSGGOG00000012841	-	92	79.562	Gorilla_gorilla
ENSXCOG00000011170	smarca5	98	81.919	ENSHGLG00000003080	SMARCA1	93	82.485	Heterocephalus_glaber_female
ENSXCOG00000011170	smarca5	98	81.426	ENSHGLG00100001102	SMARCA1	99	81.984	Heterocephalus_glaber_male
ENSXCOG00000011170	smarca5	99	96.918	ENSHCOG00000005458	smarca5	97	96.918	Hippocampus_comes
ENSXCOG00000011170	smarca5	99	82.423	ENSIPUG00000016905	Smarca1	99	84.114	Ictalurus_punctatus
ENSXCOG00000011170	smarca5	99	92.515	ENSIPUG00000005229	SMARCA5	99	92.223	Ictalurus_punctatus
ENSXCOG00000011170	smarca5	98	82.727	ENSSTOG00000014524	SMARCA1	97	81.493	Ictidomys_tridecemlineatus
ENSXCOG00000011170	smarca5	98	81.407	ENSJJAG00000002593	Smarca1	93	81.966	Jaculus_jaculus
ENSXCOG00000011170	smarca5	100	98.016	ENSKMAG00000003777	smarca5	97	98.016	Kryptolebias_marmoratus
ENSXCOG00000011170	smarca5	94	96.211	ENSLBEG00000013295	SMARCA1	100	97.468	Labrus_bergylta
ENSXCOG00000011170	smarca5	100	96.230	ENSLBEG00000018112	smarca5	97	96.230	Labrus_bergylta
ENSXCOG00000011170	smarca5	97	84.608	ENSLACG00000016697	SMARCA1	95	85.361	Latimeria_chalumnae
ENSXCOG00000011170	smarca5	97	85.773	ENSLOCG00000014591	smarca1	95	85.773	Lepisosteus_oculatus
ENSXCOG00000011170	smarca5	98	81.627	ENSLAFG00000000896	SMARCA1	98	82.186	Loxodonta_africana
ENSXCOG00000011170	smarca5	98	82.727	ENSMFAG00000002117	SMARCA1	94	84.444	Macaca_fascicularis
ENSXCOG00000011170	smarca5	96	83.747	ENSMMUG00000008818	SMARCA1	97	84.558	Macaca_mulatta
ENSXCOG00000011170	smarca5	96	83.747	ENSMNEG00000041768	SMARCA1	94	84.444	Macaca_nemestrina
ENSXCOG00000011170	smarca5	98	82.727	ENSMLEG00000043198	SMARCA1	93	83.401	Mandrillus_leucophaeus
ENSXCOG00000011170	smarca5	100	97.036	ENSMAMG00000014294	smarca5	97	97.036	Mastacembelus_armatus
ENSXCOG00000011170	smarca5	100	97.522	ENSMZEG00005009369	smarca5	97	97.522	Maylandia_zebra
ENSXCOG00000011170	smarca5	97	82.998	ENSMGAG00000007042	SMARCA1	98	82.998	Meleagris_gallopavo
ENSXCOG00000011170	smarca5	96	82.080	ENSMAUG00000008133	Smarca1	91	82.199	Mesocricetus_auratus
ENSXCOG00000011170	smarca5	98	83.131	ENSMICG00000015768	SMARCA1	93	83.707	Microcebus_murinus
ENSXCOG00000011170	smarca5	98	81.005	ENSMOCG00000009464	Smarca1	93	81.560	Microtus_ochrogaster
ENSXCOG00000011170	smarca5	99	95.871	ENSMMOG00000005547	smarca5	100	95.871	Mola_mola
ENSXCOG00000011170	smarca5	97	83.996	ENSMODG00000013187	-	94	83.996	Monodelphis_domestica
ENSXCOG00000011170	smarca5	100	96.931	ENSMALG00000002081	smarca5	99	95.884	Monopterus_albus
ENSXCOG00000011170	smarca5	98	81.307	MGP_CAROLIEiJ_G0033034	Smarca1	93	81.864	Mus_caroli
ENSXCOG00000011170	smarca5	98	81.407	ENSMUSG00000031099	Smarca1	93	81.966	Mus_musculus
ENSXCOG00000011170	smarca5	97	81.579	MGP_PahariEiJ_G0031579	Smarca1	92	82.245	Mus_pahari
ENSXCOG00000011170	smarca5	98	81.407	MGP_SPRETEiJ_G0034192	Smarca1	93	81.966	Mus_spretus
ENSXCOG00000011170	smarca5	98	81.936	ENSMPUG00000017423	SMARCA1	88	82.495	Mustela_putorius_furo
ENSXCOG00000011170	smarca5	98	80.677	ENSMLUG00000029614	SMARCA1	93	80.924	Myotis_lucifugus
ENSXCOG00000011170	smarca5	96	82.595	ENSNGAG00000006492	Smarca1	91	82.723	Nannospalax_galili
ENSXCOG00000011170	smarca5	99	97.789	ENSNBRG00000004463	smarca5	100	97.789	Neolamprologus_brichardi
ENSXCOG00000011170	smarca5	98	81.038	ENSNLEG00000015179	SMARCA1	94	83.721	Nomascus_leucogenys
ENSXCOG00000011170	smarca5	91	76.257	ENSMEUG00000008819	SMARCA1	98	76.257	Notamacropus_eugenii
ENSXCOG00000011170	smarca5	96	82.004	ENSODEG00000012163	SMARCA1	91	82.723	Octodon_degus
ENSXCOG00000011170	smarca5	100	97.621	ENSONIG00000009993	smarca5	97	97.621	Oreochromis_niloticus
ENSXCOG00000011170	smarca5	96	84.877	ENSOANG00000002862	SMARCA1	99	84.877	Ornithorhynchus_anatinus
ENSXCOG00000011170	smarca5	98	83.080	ENSOCUG00000001047	SMARCA1	93	83.401	Oryctolagus_cuniculus
ENSXCOG00000011170	smarca5	100	97.123	ENSORLG00000021998	smarca5	97	97.123	Oryzias_latipes
ENSXCOG00000011170	smarca5	100	97.024	ENSORLG00020017679	smarca5	97	97.024	Oryzias_latipes_hni
ENSXCOG00000011170	smarca5	100	97.123	ENSORLG00015017210	smarca5	97	97.123	Oryzias_latipes_hsok
ENSXCOG00000011170	smarca5	100	97.123	ENSOMEG00000000086	smarca5	97	97.123	Oryzias_melastigma
ENSXCOG00000011170	smarca5	95	83.368	ENSOGAG00000004399	SMARCA1	91	83.770	Otolemur_garnettii
ENSXCOG00000011170	smarca5	97	83.231	ENSOARG00000014638	SMARCA1	99	83.231	Ovis_aries
ENSXCOG00000011170	smarca5	98	82.727	ENSPPAG00000034647	SMARCA1	93	83.401	Pan_paniscus
ENSXCOG00000011170	smarca5	98	82.929	ENSPPRG00000008929	SMARCA1	93	83.503	Panthera_pardus
ENSXCOG00000011170	smarca5	98	81.033	ENSPTIG00000000915	SMARCA1	96	81.582	Panthera_tigris_altaica
ENSXCOG00000011170	smarca5	98	82.727	ENSPTRG00000049876	SMARCA1	93	82.394	Pan_troglodytes
ENSXCOG00000011170	smarca5	98	82.727	ENSPANG00000003871	SMARCA1	93	83.401	Papio_anubis
ENSXCOG00000011170	smarca5	97	82.096	ENSPKIG00000013411	smarca1	99	82.096	Paramormyrops_kingsleyae
ENSXCOG00000011170	smarca5	98	82.983	ENSPSIG00000010101	SMARCA1	99	84.465	Pelodiscus_sinensis
ENSXCOG00000011170	smarca5	96	82.389	ENSPEMG00000017503	Smarca1	91	82.513	Peromyscus_maniculatus_bairdii
ENSXCOG00000011170	smarca5	97	84.420	ENSPCIG00000015460	SMARCA1	96	84.420	Phascolarctos_cinereus
ENSXCOG00000011170	smarca5	100	99.603	ENSPFOG00000007649	smarca5	97	99.603	Poecilia_formosa
ENSXCOG00000011170	smarca5	100	99.603	ENSPLAG00000003363	smarca5	97	99.603	Poecilia_latipinna
ENSXCOG00000011170	smarca5	100	99.702	ENSPMEG00000019849	smarca5	97	99.702	Poecilia_mexicana
ENSXCOG00000011170	smarca5	100	99.702	ENSPREG00000023250	smarca5	97	99.702	Poecilia_reticulata
ENSXCOG00000011170	smarca5	98	79.899	ENSPPYG00000020703	SMARCA1	93	80.550	Pongo_abelii
ENSXCOG00000011170	smarca5	77	76.368	ENSPCOG00000020722	SMARCA1	93	79.970	Propithecus_coquereli
ENSXCOG00000011170	smarca5	90	83.226	ENSPVAG00000003805	SMARCA1	85	83.311	Pteropus_vampyrus
ENSXCOG00000011170	smarca5	60	98.947	ENSPNYG00000012299	smarca5	93	98.947	Pundamilia_nyererei
ENSXCOG00000011170	smarca5	98	81.515	ENSRNOG00000003762	Smarca1	93	82.077	Rattus_norvegicus
ENSXCOG00000011170	smarca5	98	82.828	ENSRROG00000034167	SMARCA1	93	83.503	Rhinopithecus_roxellana
ENSXCOG00000011170	smarca5	97	83.436	ENSSBOG00000020641	SMARCA1	99	83.436	Saimiri_boliviensis_boliviensis
ENSXCOG00000011170	smarca5	96	79.733	ENSSHAG00000013518	SMARCA1	99	79.733	Sarcophilus_harrisii
ENSXCOG00000011170	smarca5	99	91.218	ENSSFOG00015016794	smarca5	100	93.093	Scleropages_formosus
ENSXCOG00000011170	smarca5	97	84.654	ENSSFOG00015009043	smarca1	96	84.827	Scleropages_formosus
ENSXCOG00000011170	smarca5	100	96.429	ENSSMAG00000004801	smarca5	97	96.429	Scophthalmus_maximus
ENSXCOG00000011170	smarca5	100	96.925	ENSSDUG00000020690	smarca5	97	96.925	Seriola_dumerili
ENSXCOG00000011170	smarca5	100	96.925	ENSSLDG00000025190	smarca5	97	96.925	Seriola_lalandi_dorsalis
ENSXCOG00000011170	smarca5	81	84.698	ENSSARG00000000842	SMARCA1	81	84.698	Sorex_araneus
ENSXCOG00000011170	smarca5	96	84.472	ENSSPUG00000000590	SMARCA1	96	82.714	Sphenodon_punctatus
ENSXCOG00000011170	smarca5	100	97.423	ENSSPAG00000002894	smarca5	97	97.712	Stegastes_partitus
ENSXCOG00000011170	smarca5	96	83.644	ENSSSCG00000012649	SMARCA1	97	81.836	Sus_scrofa
ENSXCOG00000011170	smarca5	97	83.707	ENSTGUG00000003899	-	99	83.707	Taeniopygia_guttata
ENSXCOG00000011170	smarca5	100	95.933	ENSTRUG00000014094	smarca5	97	95.933	Takifugu_rubripes
ENSXCOG00000011170	smarca5	100	95.040	ENSTNIG00000017717	smarca5	96	95.040	Tetraodon_nigroviridis
ENSXCOG00000011170	smarca5	88	82.262	ENSTBEG00000014973	SMARCA1	89	82.413	Tupaia_belangeri
ENSXCOG00000011170	smarca5	96	79.469	ENSTTRG00000006168	SMARCA1	96	80.231	Tursiops_truncatus
ENSXCOG00000011170	smarca5	98	82.727	ENSUAMG00000020201	SMARCA1	93	83.299	Ursus_americanus
ENSXCOG00000011170	smarca5	99	78.187	ENSUMAG00000004073	SMARCA1	96	85.086	Ursus_maritimus
ENSXCOG00000011170	smarca5	75	86.842	ENSVPAG00000010492	-	77	87.543	Vicugna_pacos
ENSXCOG00000011170	smarca5	98	82.929	ENSVVUG00000008878	SMARCA1	98	84.878	Vulpes_vulpes
ENSXCOG00000011170	smarca5	97	83.927	ENSXETG00000001526	smarca1	98	84.254	Xenopus_tropicalis
ENSXCOG00000011170	smarca5	100	100.000	ENSXMAG00000009678	smarca5	98	99.672	Xiphophorus_maculatus