EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: ENSXCOG00000011604 (Gene tree)
Gene ID: -
Gene Symbol: UPF2
Alias: DKFZP434D222|KIAA1408|RENT2|smg-3
Full Name: UPF2%2C regulator of nonsense mediated mRNA decay
Gene Type: protein_coding
Species: Xiphophorus_couchianus
Status: putative
Strand: Minus strand
Length: 19791 bases
Position: chrKQ557209.1:287030-306820
Accession: 17854
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSXCOP00000015317	Upf2	PF04050.14	1.4e-32	1	1
ENSXCOP00000015317	MIF4G	PF02854.19	1.5e-80	1	3
ENSXCOP00000015317	MIF4G	PF02854.19	1.5e-80	2	3
ENSXCOP00000015317	MIF4G	PF02854.19	1.5e-80	3	3

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSXCOT00000015508	UPF2-201	3822	-	ENSXCOP00000015317	1273 (aa)	-	-

Gene Model

Click here to download ENSXCOG00000011604's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSXCOG00000011604's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSXCOG00000011604	UPF2	100	81.577	ENSG00000151461	UPF2	92	84.543	Homo_sapiens
ENSXCOG00000011604	UPF2	100	88.462	ENSAPOG00000015837	UPF2	100	88.106	Acanthochromis_polyacanthus
ENSXCOG00000011604	UPF2	100	82.109	ENSAMEG00000004586	UPF2	92	84.701	Ailuropoda_melanoleuca
ENSXCOG00000011604	UPF2	100	93.574	ENSACIG00000018078	UPF2	100	93.966	Amphilophus_citrinellus
ENSXCOG00000011604	UPF2	100	94.427	ENSAOCG00000016766	UPF2	99	94.427	Amphiprion_ocellaris
ENSXCOG00000011604	UPF2	100	94.505	ENSAPEG00000019084	UPF2	99	94.505	Amphiprion_percula
ENSXCOG00000011604	UPF2	100	93.417	ENSATEG00000021677	UPF2	99	93.809	Anabas_testudineus
ENSXCOG00000011604	UPF2	100	78.349	ENSAPLG00000010287	UPF2	90	82.803	Anas_platyrhynchos
ENSXCOG00000011604	UPF2	100	81.875	ENSACAG00000009259	UPF2	99	82.031	Anolis_carolinensis
ENSXCOG00000011604	UPF2	91	78.608	ENSANAG00000028451	UPF2	93	78.902	Aotus_nancymaae
ENSXCOG00000011604	UPF2	100	93.260	ENSACLG00000012696	UPF2	99	93.652	Astatotilapia_calliptera
ENSXCOG00000011604	UPF2	100	88.194	ENSAMXG00000013700	UPF2	99	86.083	Astyanax_mexicanus
ENSXCOG00000011604	UPF2	100	81.875	ENSBTAG00000000288	UPF2	99	79.485	Bos_taurus
ENSXCOG00000011604	UPF2	100	81.406	ENSCJAG00000020685	UPF2	92	84.287	Callithrix_jacchus
ENSXCOG00000011604	UPF2	100	82.031	ENSCAFG00000004839	UPF2	92	84.530	Canis_familiaris
ENSXCOG00000011604	UPF2	95	86.364	ENSCAFG00020005882	UPF2	92	82.338	Canis_lupus_dingo
ENSXCOG00000011604	UPF2	100	82.031	ENSCHIG00000020359	UPF2	99	79.641	Capra_hircus
ENSXCOG00000011604	UPF2	100	81.719	ENSTSYG00000000935	UPF2	97	85.000	Carlito_syrichta
ENSXCOG00000011604	UPF2	91	74.166	ENSCAPG00000016658	UPF2	95	73.932	Cavia_aperea
ENSXCOG00000011604	UPF2	91	82.549	ENSCPOG00000008809	UPF2	92	82.509	Cavia_porcellus
ENSXCOG00000011604	UPF2	96	82.268	ENSCCAG00000035991	UPF2	99	83.299	Cebus_capucinus
ENSXCOG00000011604	UPF2	100	81.577	ENSCATG00000032679	UPF2	92	84.458	Cercocebus_atys
ENSXCOG00000011604	UPF2	100	81.157	ENSCLAG00000011434	UPF2	99	79.906	Chinchilla_lanigera
ENSXCOG00000011604	UPF2	100	81.577	ENSCSAG00000013372	UPF2	92	84.458	Chlorocebus_sabaeus
ENSXCOG00000011604	UPF2	79	88.889	ENSCHOG00000000422	UPF2	83	88.989	Choloepus_hoffmanni
ENSXCOG00000011604	UPF2	100	80.360	ENSCPBG00000027823	UPF2	93	85.128	Chrysemys_picta_bellii
ENSXCOG00000011604	UPF2	79	49.263	ENSCSAVG00000007772	-	99	48.381	Ciona_savignyi
ENSXCOG00000011604	UPF2	100	76.452	ENSCANG00000040396	UPF2	91	79.181	Colobus_angolensis_palliatus
ENSXCOG00000011604	UPF2	100	81.314	ENSCGRG00001019347	Upf2	91	84.003	Cricetulus_griseus_chok1gshd
ENSXCOG00000011604	UPF2	100	81.314	ENSCGRG00000017993	Upf2	91	84.003	Cricetulus_griseus_crigri
ENSXCOG00000011604	UPF2	99	85.512	ENSCSEG00000003520	UPF2	99	84.404	Cynoglossus_semilaevis
ENSXCOG00000011604	UPF2	99	95.965	ENSCVAG00000006167	UPF2	100	95.965	Cyprinodon_variegatus
ENSXCOG00000011604	UPF2	100	81.797	ENSDNOG00000018160	UPF2	92	84.786	Dasypus_novemcinctus
ENSXCOG00000011604	UPF2	100	81.250	ENSDORG00000002478	Upf2	99	78.906	Dipodomys_ordii
ENSXCOG00000011604	UPF2	90	35.732	FBgn0029992	Upf2	73	39.364	Drosophila_melanogaster
ENSXCOG00000011604	UPF2	73	91.971	ENSETEG00000011583	-	62	91.667	Echinops_telfairi
ENSXCOG00000011604	UPF2	64	71.523	ENSEBUG00000012448	-	93	68.713	Eptatretus_burgeri
ENSXCOG00000011604	UPF2	100	81.079	ENSEASG00005019274	UPF2	99	78.886	Equus_asinus_asinus
ENSXCOG00000011604	UPF2	100	81.079	ENSECAG00000017022	UPF2	92	84.615	Equus_caballus
ENSXCOG00000011604	UPF2	82	74.051	ENSEEUG00000007819	UPF2	68	86.387	Erinaceus_europaeus
ENSXCOG00000011604	UPF2	100	87.031	ENSELUG00000012014	UPF2	99	87.432	Esox_lucius
ENSXCOG00000011604	UPF2	100	85.083	ENSFCAG00000005785	UPF2	92	84.701	Felis_catus
ENSXCOG00000011604	UPF2	100	82.891	ENSFALG00000001889	UPF2	98	82.734	Ficedula_albicollis
ENSXCOG00000011604	UPF2	100	80.688	ENSFDAG00000014348	UPF2	99	79.593	Fukomys_damarensis
ENSXCOG00000011604	UPF2	99	96.437	ENSFHEG00000009826	UPF2	99	96.437	Fundulus_heteroclitus
ENSXCOG00000011604	UPF2	91	88.438	ENSGMOG00000005557	UPF2	100	85.725	Gadus_morhua
ENSXCOG00000011604	UPF2	100	82.904	ENSGALG00000033772	UPF2	99	82.399	Gallus_gallus
ENSXCOG00000011604	UPF2	100	98.743	ENSGAFG00000020867	UPF2	99	98.743	Gambusia_affinis
ENSXCOG00000011604	UPF2	100	90.539	ENSGACG00000001080	UPF2	100	90.584	Gasterosteus_aculeatus
ENSXCOG00000011604	UPF2	100	81.719	ENSGAGG00000002700	UPF2	92	84.786	Gopherus_agassizii
ENSXCOG00000011604	UPF2	100	81.577	ENSGGOG00000001479	UPF2	92	84.543	Gorilla_gorilla
ENSXCOG00000011604	UPF2	100	93.260	ENSHBUG00000004249	UPF2	100	93.652	Haplochromis_burtoni
ENSXCOG00000011604	UPF2	100	80.766	ENSHGLG00000015176	-	92	84.044	Heterocephalus_glaber_female
ENSXCOG00000011604	UPF2	100	71.987	ENSHGLG00000003822	-	99	71.831	Heterocephalus_glaber_female
ENSXCOG00000011604	UPF2	100	78.655	ENSHGLG00100010036	UPF2	95	80.404	Heterocephalus_glaber_male
ENSXCOG00000011604	UPF2	100	89.601	ENSHCOG00000004025	UPF2	99	89.601	Hippocampus_comes
ENSXCOG00000011604	UPF2	100	87.099	ENSIPUG00000015524	UPF2	99	86.787	Ictalurus_punctatus
ENSXCOG00000011604	UPF2	100	81.797	ENSSTOG00000013075	UPF2	91	84.215	Ictidomys_tridecemlineatus
ENSXCOG00000011604	UPF2	100	78.421	ENSJJAG00000004913	Upf2	99	78.298	Jaculus_jaculus
ENSXCOG00000011604	UPF2	99	93.286	ENSKMAG00000001071	UPF2	99	93.365	Kryptolebias_marmoratus
ENSXCOG00000011604	UPF2	80	89.128	ENSLBEG00000000728	-	94	89.561	Labrus_bergylta
ENSXCOG00000011604	UPF2	100	91.928	ENSLBEG00000016394	-	99	92.712	Labrus_bergylta
ENSXCOG00000011604	UPF2	91	77.654	ENSLACG00000015945	UPF2	99	75.604	Latimeria_chalumnae
ENSXCOG00000011604	UPF2	99	87.461	ENSLOCG00000015698	UPF2	99	87.066	Lepisosteus_oculatus
ENSXCOG00000011604	UPF2	100	81.577	ENSMFAG00000043865	UPF2	92	84.458	Macaca_fascicularis
ENSXCOG00000011604	UPF2	100	81.577	ENSMMUG00000008241	UPF2	92	84.458	Macaca_mulatta
ENSXCOG00000011604	UPF2	80	82.066	ENSMNEG00000008062	UPF2	89	85.262	Macaca_nemestrina
ENSXCOG00000011604	UPF2	100	79.563	ENSMLEG00000036120	UPF2	92	82.097	Mandrillus_leucophaeus
ENSXCOG00000011604	UPF2	100	91.301	ENSMAMG00000018276	UPF2	99	93.495	Mastacembelus_armatus
ENSXCOG00000011604	UPF2	100	93.260	ENSMZEG00005021595	UPF2	99	93.652	Maylandia_zebra
ENSXCOG00000011604	UPF2	99	82.431	ENSMGAG00000004573	UPF2	99	81.911	Meleagris_gallopavo
ENSXCOG00000011604	UPF2	100	79.281	ENSMAUG00000016512	Upf2	99	77.091	Mesocricetus_auratus
ENSXCOG00000011604	UPF2	100	79.375	ENSMICG00000001716	UPF2	91	81.229	Microcebus_murinus
ENSXCOG00000011604	UPF2	100	80.595	ENSMOCG00000008263	Upf2	99	79.499	Microtus_ochrogaster
ENSXCOG00000011604	UPF2	100	88.854	ENSMMOG00000006528	UPF2	100	88.697	Mola_mola
ENSXCOG00000011604	UPF2	100	80.000	ENSMODG00000016794	UPF2	92	84.872	Monodelphis_domestica
ENSXCOG00000011604	UPF2	100	92.151	ENSMALG00000002663	UPF2	100	92.229	Monopterus_albus
ENSXCOG00000011604	UPF2	100	81.079	MGP_CAROLIEiJ_G0023157	Upf2	99	84.059	Mus_caroli
ENSXCOG00000011604	UPF2	100	81.235	ENSMUSG00000043241	Upf2	99	83.144	Mus_musculus
ENSXCOG00000011604	UPF2	100	81.470	MGP_PahariEiJ_G0019217	Upf2	99	82.955	Mus_pahari
ENSXCOG00000011604	UPF2	100	81.470	MGP_SPRETEiJ_G0024075	Upf2	99	83.144	Mus_spretus
ENSXCOG00000011604	UPF2	100	81.953	ENSMPUG00000001064	UPF2	92	84.701	Mustela_putorius_furo
ENSXCOG00000011604	UPF2	100	80.967	ENSMLUG00000000228	UPF2	92	83.560	Myotis_lucifugus
ENSXCOG00000011604	UPF2	100	93.260	ENSNBRG00000013629	UPF2	99	93.652	Neolamprologus_brichardi
ENSXCOG00000011604	UPF2	100	81.499	ENSNLEG00000012058	UPF2	92	84.372	Nomascus_leucogenys
ENSXCOG00000011604	UPF2	72	92.254	ENSOPRG00000006801	-	73	92.254	Ochotona_princeps
ENSXCOG00000011604	UPF2	100	80.655	ENSODEG00000001290	UPF2	99	79.407	Octodon_degus
ENSXCOG00000011604	UPF2	100	92.868	ENSONIG00000017991	UPF2	99	93.260	Oreochromis_niloticus
ENSXCOG00000011604	UPF2	100	79.533	ENSOCUG00000006230	UPF2	92	84.478	Oryctolagus_cuniculus
ENSXCOG00000011604	UPF2	100	91.451	ENSORLG00000017189	UPF2	99	91.686	Oryzias_latipes
ENSXCOG00000011604	UPF2	100	91.529	ENSORLG00020005969	UPF2	99	91.765	Oryzias_latipes_hni
ENSXCOG00000011604	UPF2	100	91.529	ENSORLG00015005713	UPF2	99	91.765	Oryzias_latipes_hsok
ENSXCOG00000011604	UPF2	100	88.305	ENSOMEG00000023420	UPF2	98	88.226	Oryzias_melastigma
ENSXCOG00000011604	UPF2	100	81.719	ENSOGAG00000005796	UPF2	92	84.274	Otolemur_garnettii
ENSXCOG00000011604	UPF2	100	81.903	ENSOARG00000014587	UPF2	99	79.517	Ovis_aries
ENSXCOG00000011604	UPF2	100	79.095	ENSPPAG00000037953	UPF2	92	81.671	Pan_paniscus
ENSXCOG00000011604	UPF2	100	82.109	ENSPPRG00000000690	UPF2	92	84.701	Panthera_pardus
ENSXCOG00000011604	UPF2	100	82.109	ENSPTIG00000008867	UPF2	92	84.701	Panthera_tigris_altaica
ENSXCOG00000011604	UPF2	100	81.577	ENSPTRG00000002291	UPF2	92	84.543	Pan_troglodytes
ENSXCOG00000011604	UPF2	100	81.577	ENSPANG00000023399	UPF2	92	84.372	Papio_anubis
ENSXCOG00000011604	UPF2	100	87.480	ENSPKIG00000025502	UPF2	99	86.072	Paramormyrops_kingsleyae
ENSXCOG00000011604	UPF2	59	81.028	ENSPSIG00000015158	UPF2	95	80.369	Pelodiscus_sinensis
ENSXCOG00000011604	UPF2	100	88.610	ENSPMGG00000005259	UPF2	100	88.217	Periophthalmus_magnuspinnatus
ENSXCOG00000011604	UPF2	93	73.487	ENSPEMG00000015731	Upf2	90	83.122	Peromyscus_maniculatus_bairdii
ENSXCOG00000011604	UPF2	100	81.761	ENSPCIG00000006656	UPF2	91	84.872	Phascolarctos_cinereus
ENSXCOG00000011604	UPF2	100	98.822	ENSPFOG00000017118	UPF2	99	98.822	Poecilia_formosa
ENSXCOG00000011604	UPF2	100	98.900	ENSPLAG00000005094	UPF2	99	98.900	Poecilia_latipinna
ENSXCOG00000011604	UPF2	100	98.822	ENSPMEG00000017009	UPF2	99	98.822	Poecilia_mexicana
ENSXCOG00000011604	UPF2	100	97.486	ENSPREG00000021880	UPF2	100	97.486	Poecilia_reticulata
ENSXCOG00000011604	UPF2	66	84.423	ENSPPYG00000002089	-	99	84.542	Pongo_abelii
ENSXCOG00000011604	UPF2	86	74.954	ENSPCAG00000000684	UPF2	85	74.954	Procavia_capensis
ENSXCOG00000011604	UPF2	100	78.828	ENSPCOG00000021656	UPF2	100	77.031	Propithecus_coquereli
ENSXCOG00000011604	UPF2	100	75.488	ENSPVAG00000017286	UPF2	99	73.380	Pteropus_vampyrus
ENSXCOG00000011604	UPF2	100	90.674	ENSPNYG00000017096	UPF2	100	91.066	Pundamilia_nyererei
ENSXCOG00000011604	UPF2	100	88.663	ENSPNAG00000009357	UPF2	99	88.507	Pygocentrus_nattereri
ENSXCOG00000011604	UPF2	100	77.108	ENSRNOG00000023593	Upf2	98	93.182	Rattus_norvegicus
ENSXCOG00000011604	UPF2	100	80.391	ENSRBIG00000037780	UPF2	92	82.991	Rhinopithecus_bieti
ENSXCOG00000011604	UPF2	100	81.343	ENSRROG00000043547	UPF2	92	84.116	Rhinopithecus_roxellana
ENSXCOG00000011604	UPF2	100	81.328	ENSSBOG00000020012	UPF2	99	79.219	Saimiri_boliviensis_boliviensis
ENSXCOG00000011604	UPF2	100	86.083	ENSSFOG00015023788	upf2	100	85.435	Scleropages_formosus
ENSXCOG00000011604	UPF2	90	91.667	ENSSMAG00000007637	UPF2	100	90.303	Scophthalmus_maximus
ENSXCOG00000011604	UPF2	100	94.505	ENSSDUG00000017244	UPF2	99	94.505	Seriola_dumerili
ENSXCOG00000011604	UPF2	100	90.895	ENSSLDG00000016866	UPF2	100	90.659	Seriola_lalandi_dorsalis
ENSXCOG00000011604	UPF2	100	78.906	ENSSARG00000008615	UPF2	99	81.094	Sorex_araneus
ENSXCOG00000011604	UPF2	100	79.813	ENSSPUG00000014544	UPF2	99	79.891	Sphenodon_punctatus
ENSXCOG00000011604	UPF2	68	84.307	ENSSSCG00000011117	-	99	84.078	Sus_scrofa
ENSXCOG00000011604	UPF2	99	82.955	ENSTGUG00000002163	-	92	85.714	Taeniopygia_guttata
ENSXCOG00000011604	UPF2	100	90.987	ENSTRUG00000007519	UPF2	99	91.301	Takifugu_rubripes
ENSXCOG00000011604	UPF2	100	88.185	ENSTNIG00000004453	UPF2	99	88.419	Tetraodon_nigroviridis
ENSXCOG00000011604	UPF2	93	72.292	ENSTBEG00000012679	UPF2	93	72.124	Tupaia_belangeri
ENSXCOG00000011604	UPF2	100	81.235	ENSTTRG00000016388	UPF2	99	79.984	Tursiops_truncatus
ENSXCOG00000011604	UPF2	87	93.258	ENSUAMG00000023560	UPF2	89	93.258	Ursus_americanus
ENSXCOG00000011604	UPF2	100	82.031	ENSUMAG00000012953	UPF2	87	84.556	Ursus_maritimus
ENSXCOG00000011604	UPF2	83	96.774	ENSVPAG00000006763	UPF2	77	96.774	Vicugna_pacos
ENSXCOG00000011604	UPF2	100	82.031	ENSVVUG00000006166	UPF2	92	84.530	Vulpes_vulpes
ENSXCOG00000011604	UPF2	100	79.407	ENSXETG00000033103	UPF2	91	83.247	Xenopus_tropicalis
ENSXCOG00000011604	UPF2	100	99.764	ENSXMAG00000017209	UPF2	99	99.764	Xiphophorus_maculatus