EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSXCOG00000011607 (Gene tree)
Gene ID: -
Gene Symbol: sbno1
Alias: -
Full Name: strawberry notch homolog 1 (Drosophila)
Gene Type: protein_coding
Species: Xiphophorus_couchianus
Status: putative
Strand: Plus strand
Length: 16563 bases
Position: chrKQ557225.1:25428079-25444641
Accession: ZDB-GENE-080522-2
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSXCOP00000015326	ResIII	PF04851.15	1.2e-07	1	1
ENSXCOP00000015324	ResIII	PF04851.15	2.5e-07	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSXCOT00000015515	-	3834	-	ENSXCOP00000015324	1277 (aa)	-	-
ENSXCOT00000015517	-	2526	-	ENSXCOP00000015326	841 (aa)	-	-

Gene Model

Click here to download ENSXCOG00000011607's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSXCOG00000011607's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSXCOG00000011607	sbno1	67	62.651	ENSXCOG00000009209	si:ch73-63e15.2	78	64.626

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSXCOG00000011607	sbno1	95	74.840	ENSG00000139697	SBNO1	89	74.183	Homo_sapiens
ENSXCOG00000011607	sbno1	77	94.076	ENSAPOG00000003196	sbno1	85	93.327	Acanthochromis_polyacanthus
ENSXCOG00000011607	sbno1	95	75.080	ENSAMEG00000015151	SBNO1	89	74.324	Ailuropoda_melanoleuca
ENSXCOG00000011607	sbno1	99	83.452	ENSACIG00000008088	sbno1	87	86.364	Amphilophus_citrinellus
ENSXCOG00000011607	sbno1	99	85.064	ENSAOCG00000014859	sbno1	86	89.448	Amphiprion_ocellaris
ENSXCOG00000011607	sbno1	99	85.064	ENSAPEG00000006069	sbno1	86	89.367	Amphiprion_percula
ENSXCOG00000011607	sbno1	99	87.309	ENSATEG00000006667	sbno1	89	88.711	Anabas_testudineus
ENSXCOG00000011607	sbno1	95	75.525	ENSAPLG00000015674	SBNO1	87	75.748	Anas_platyrhynchos
ENSXCOG00000011607	sbno1	99	71.074	ENSACAG00000015441	SBNO1	78	74.381	Anolis_carolinensis
ENSXCOG00000011607	sbno1	90	85.263	ENSANAG00000029958	-	98	74.899	Aotus_nancymaae
ENSXCOG00000011607	sbno1	95	83.483	ENSACLG00000024913	sbno1	87	83.715	Astatotilapia_calliptera
ENSXCOG00000011607	sbno1	99	78.225	ENSAMXG00000019473	sbno1	88	82.386	Astyanax_mexicanus
ENSXCOG00000011607	sbno1	95	75.160	ENSBTAG00000020505	SBNO1	89	74.502	Bos_taurus
ENSXCOG00000011607	sbno1	95	75.201	ENSCJAG00000016599	SBNO1	97	71.782	Callithrix_jacchus
ENSXCOG00000011607	sbno1	95	75.240	ENSCAFG00000007503	SBNO1	85	85.450	Canis_familiaris
ENSXCOG00000011607	sbno1	90	82.199	ENSCAFG00020015363	SBNO1	86	82.415	Canis_lupus_dingo
ENSXCOG00000011607	sbno1	90	85.602	ENSCHIG00000008382	SBNO1	86	85.827	Capra_hircus
ENSXCOG00000011607	sbno1	95	74.820	ENSTSYG00000012749	SBNO1	93	76.136	Carlito_syrichta
ENSXCOG00000011607	sbno1	85	85.864	ENSCAPG00000000384	SBNO1	86	86.089	Cavia_aperea
ENSXCOG00000011607	sbno1	90	85.864	ENSCPOG00000008109	SBNO1	86	86.089	Cavia_porcellus
ENSXCOG00000011607	sbno1	99	71.077	ENSCCAG00000035316	SBNO1	87	70.209	Cebus_capucinus
ENSXCOG00000011607	sbno1	86	85.602	ENSCATG00000008239	SBNO1	85	85.827	Cercocebus_atys
ENSXCOG00000011607	sbno1	90	85.864	ENSCLAG00000008995	SBNO1	86	86.089	Chinchilla_lanigera
ENSXCOG00000011607	sbno1	77	82.064	ENSCSAG00000002064	SBNO1	86	81.275	Chlorocebus_sabaeus
ENSXCOG00000011607	sbno1	91	78.512	ENSCHOG00000008814	SBNO1	84	73.175	Choloepus_hoffmanni
ENSXCOG00000011607	sbno1	95	75.612	ENSCPBG00000025968	SBNO1	91	75.223	Chrysemys_picta_bellii
ENSXCOG00000011607	sbno1	99	68.452	ENSCANG00000042688	-	87	70.968	Colobus_angolensis_palliatus
ENSXCOG00000011607	sbno1	91	82.025	ENSCGRG00001017470	Sbno1	87	82.025	Cricetulus_griseus_chok1gshd
ENSXCOG00000011607	sbno1	91	82.025	ENSCGRG00000004756	Sbno1	87	82.025	Cricetulus_griseus_crigri
ENSXCOG00000011607	sbno1	99	84.086	ENSCSEG00000011919	sbno1	88	86.656	Cynoglossus_semilaevis
ENSXCOG00000011607	sbno1	99	90.877	ENSCVAG00000007038	sbno1	89	91.033	Cyprinodon_variegatus
ENSXCOG00000011607	sbno1	99	79.575	ENSDARG00000099080	sbno1	88	82.941	Danio_rerio
ENSXCOG00000011607	sbno1	95	77.465	ENSDNOG00000017147	SBNO1	98	75.428	Dasypus_novemcinctus
ENSXCOG00000011607	sbno1	95	69.663	ENSDORG00000015261	Sbno1	87	81.044	Dipodomys_ordii
ENSXCOG00000011607	sbno1	99	64.858	ENSETEG00000005620	SBNO1	82	67.875	Echinops_telfairi
ENSXCOG00000011607	sbno1	98	59.298	ENSEBUG00000013823	sbno1	93	62.652	Eptatretus_burgeri
ENSXCOG00000011607	sbno1	85	72.576	ENSEASG00005012595	-	92	73.980	Equus_asinus_asinus
ENSXCOG00000011607	sbno1	95	75.180	ENSECAG00000006127	SBNO1	89	74.582	Equus_caballus
ENSXCOG00000011607	sbno1	83	73.385	ENSEEUG00000003793	SBNO1	69	76.425	Erinaceus_europaeus
ENSXCOG00000011607	sbno1	99	78.154	ENSELUG00000002886	sbno1	88	81.401	Esox_lucius
ENSXCOG00000011607	sbno1	95	75.180	ENSFCAG00000015331	SBNO1	89	74.422	Felis_catus
ENSXCOG00000011607	sbno1	95	75.767	ENSFALG00000009273	SBNO1	88	75.220	Ficedula_albicollis
ENSXCOG00000011607	sbno1	90	81.316	ENSFDAG00000014232	SBNO1	86	79.795	Fukomys_damarensis
ENSXCOG00000011607	sbno1	99	90.330	ENSFHEG00000007360	sbno1	88	92.370	Fundulus_heteroclitus
ENSXCOG00000011607	sbno1	91	84.094	ENSGMOG00000018229	sbno1	86	86.201	Gadus_morhua
ENSXCOG00000011607	sbno1	96	75.561	ENSGALG00000003392	SBNO1	99	75.401	Gallus_gallus
ENSXCOG00000011607	sbno1	99	93.075	ENSGAFG00000003960	sbno1	88	95.377	Gambusia_affinis
ENSXCOG00000011607	sbno1	89	89.170	ENSGACG00000015633	sbno1	86	88.996	Gasterosteus_aculeatus
ENSXCOG00000011607	sbno1	92	86.458	ENSGAGG00000001065	SBNO1	99	74.413	Gopherus_agassizii
ENSXCOG00000011607	sbno1	90	85.602	ENSGGOG00000015000	SBNO1	86	85.827	Gorilla_gorilla
ENSXCOG00000011607	sbno1	99	79.450	ENSHBUG00000011910	sbno1	86	76.735	Haplochromis_burtoni
ENSXCOG00000011607	sbno1	90	86.053	ENSHGLG00000014165	-	89	74.521	Heterocephalus_glaber_female
ENSXCOG00000011607	sbno1	90	90.765	ENSHCOG00000003246	sbno1	85	91.005	Hippocampus_comes
ENSXCOG00000011607	sbno1	96	80.096	ENSIPUG00000015830	Sbno1	99	81.585	Ictalurus_punctatus
ENSXCOG00000011607	sbno1	90	85.602	ENSSTOG00000023221	SBNO1	86	85.827	Ictidomys_tridecemlineatus
ENSXCOG00000011607	sbno1	90	80.577	ENSJJAG00000001741	Sbno1	86	80.577	Jaculus_jaculus
ENSXCOG00000011607	sbno1	99	89.480	ENSKMAG00000009696	sbno1	88	91.079	Kryptolebias_marmoratus
ENSXCOG00000011607	sbno1	99	85.181	ENSLBEG00000007623	sbno1	89	86.422	Labrus_bergylta
ENSXCOG00000011607	sbno1	95	74.595	ENSLACG00000017227	SBNO1	99	74.478	Latimeria_chalumnae
ENSXCOG00000011607	sbno1	99	78.023	ENSLOCG00000005725	sbno1	85	80.819	Lepisosteus_oculatus
ENSXCOG00000011607	sbno1	95	74.521	ENSLAFG00000002135	SBNO1	89	74.024	Loxodonta_africana
ENSXCOG00000011607	sbno1	90	85.602	ENSMFAG00000031429	SBNO1	98	75.285	Macaca_fascicularis
ENSXCOG00000011607	sbno1	90	85.602	ENSMMUG00000011496	SBNO1	86	85.827	Macaca_mulatta
ENSXCOG00000011607	sbno1	90	85.602	ENSMLEG00000033260	SBNO1	98	74.409	Mandrillus_leucophaeus
ENSXCOG00000011607	sbno1	99	86.509	ENSMAMG00000005473	sbno1	89	88.061	Mastacembelus_armatus
ENSXCOG00000011607	sbno1	96	75.321	ENSMGAG00000003274	SBNO1	99	75.401	Meleagris_gallopavo
ENSXCOG00000011607	sbno1	83	73.571	ENSMAUG00000004834	-	98	75.181	Mesocricetus_auratus
ENSXCOG00000011607	sbno1	90	81.316	ENSMICG00000006573	-	98	72.158	Microcebus_murinus
ENSXCOG00000011607	sbno1	91	82.785	ENSMOCG00000009390	Sbno1	87	82.785	Microtus_ochrogaster
ENSXCOG00000011607	sbno1	95	82.733	ENSMMOG00000008691	sbno1	87	82.553	Mola_mola
ENSXCOG00000011607	sbno1	95	74.859	ENSMODG00000012470	SBNO1	87	74.281	Monodelphis_domestica
ENSXCOG00000011607	sbno1	99	85.899	ENSMALG00000001056	sbno1	88	88.421	Monopterus_albus
ENSXCOG00000011607	sbno1	96	74.265	MGP_CAROLIEiJ_G0027749	Sbno1	95	91.667	Mus_caroli
ENSXCOG00000011607	sbno1	96	74.247	ENSMUSG00000038095	Sbno1	94	91.667	Mus_musculus
ENSXCOG00000011607	sbno1	96	75.140	MGP_PahariEiJ_G0024329	Sbno1	95	91.667	Mus_pahari
ENSXCOG00000011607	sbno1	96	74.168	MGP_SPRETEiJ_G0028747	Sbno1	95	91.667	Mus_spretus
ENSXCOG00000011607	sbno1	95	75.160	ENSMPUG00000001658	SBNO1	89	74.402	Mustela_putorius_furo
ENSXCOG00000011607	sbno1	99	71.043	ENSMLUG00000017159	SBNO1	89	74.183	Myotis_lucifugus
ENSXCOG00000011607	sbno1	90	85.602	ENSNGAG00000012620	Sbno1	87	85.827	Nannospalax_galili
ENSXCOG00000011607	sbno1	99	82.067	ENSNBRG00000019189	sbno1	88	83.952	Neolamprologus_brichardi
ENSXCOG00000011607	sbno1	90	80.315	ENSNLEG00000001502	SBNO1	88	80.315	Nomascus_leucogenys
ENSXCOG00000011607	sbno1	91	70.213	ENSMEUG00000008768	-	93	73.125	Notamacropus_eugenii
ENSXCOG00000011607	sbno1	99	70.892	ENSOPRG00000011054	SBNO1	89	73.634	Ochotona_princeps
ENSXCOG00000011607	sbno1	90	85.864	ENSODEG00000009997	SBNO1	86	86.089	Octodon_degus
ENSXCOG00000011607	sbno1	99	84.831	ENSONIG00000015348	sbno1	89	87.370	Oreochromis_niloticus
ENSXCOG00000011607	sbno1	95	75.100	ENSOCUG00000002441	SBNO1	85	74.281	Oryctolagus_cuniculus
ENSXCOG00000011607	sbno1	99	83.705	ENSORLG00000001593	sbno1	90	86.478	Oryzias_latipes
ENSXCOG00000011607	sbno1	99	84.272	ENSORLG00020015216	sbno1	88	86.953	Oryzias_latipes_hni
ENSXCOG00000011607	sbno1	99	84.038	ENSORLG00015002726	sbno1	88	86.791	Oryzias_latipes_hsok
ENSXCOG00000011607	sbno1	99	83.628	ENSOMEG00000019313	sbno1	88	86.699	Oryzias_melastigma
ENSXCOG00000011607	sbno1	83	72.453	ENSOGAG00000010781	-	98	73.508	Otolemur_garnettii
ENSXCOG00000011607	sbno1	95	74.760	ENSOARG00000004404	SBNO1	89	74.163	Ovis_aries
ENSXCOG00000011607	sbno1	90	85.602	ENSPPAG00000024635	SBNO1	86	85.827	Pan_paniscus
ENSXCOG00000011607	sbno1	95	75.180	ENSPPRG00000022092	SBNO1	89	74.422	Panthera_pardus
ENSXCOG00000011607	sbno1	95	75.201	ENSPTIG00000017803	SBNO1	88	74.681	Panthera_tigris_altaica
ENSXCOG00000011607	sbno1	90	85.602	ENSPTRG00000005597	SBNO1	86	85.827	Pan_troglodytes
ENSXCOG00000011607	sbno1	90	85.602	ENSPANG00000011640	SBNO1	98	75.143	Papio_anubis
ENSXCOG00000011607	sbno1	99	78.369	ENSPKIG00000001441	sbno1	89	79.968	Paramormyrops_kingsleyae
ENSXCOG00000011607	sbno1	95	73.570	ENSPSIG00000009256	-	96	73.046	Pelodiscus_sinensis
ENSXCOG00000011607	sbno1	95	75.693	ENSPSIG00000009572	-	89	74.541	Pelodiscus_sinensis
ENSXCOG00000011607	sbno1	56	88.613	ENSPMGG00000017196	sbno1	94	88.613	Periophthalmus_magnuspinnatus
ENSXCOG00000011607	sbno1	91	82.785	ENSPEMG00000016087	Sbno1	87	82.785	Peromyscus_maniculatus_bairdii
ENSXCOG00000011607	sbno1	56	56.768	ENSPMAG00000007246	-	99	57.201	Petromyzon_marinus
ENSXCOG00000011607	sbno1	95	75.303	ENSPCIG00000010985	SBNO1	89	74.461	Phascolarctos_cinereus
ENSXCOG00000011607	sbno1	99	93.333	ENSPFOG00000005069	sbno1	89	94.471	Poecilia_formosa
ENSXCOG00000011607	sbno1	99	93.333	ENSPLAG00000015015	sbno1	89	94.551	Poecilia_latipinna
ENSXCOG00000011607	sbno1	99	93.875	ENSPMEG00000021212	sbno1	89	94.476	Poecilia_mexicana
ENSXCOG00000011607	sbno1	99	92.407	ENSPREG00000017746	sbno1	89	93.515	Poecilia_reticulata
ENSXCOG00000011607	sbno1	95	74.678	ENSPPYG00000005084	SBNO1	88	74.101	Pongo_abelii
ENSXCOG00000011607	sbno1	88	67.900	ENSPCAG00000008634	SBNO1	76	68.464	Procavia_capensis
ENSXCOG00000011607	sbno1	90	85.714	ENSPCOG00000024277	SBNO1	86	85.942	Propithecus_coquereli
ENSXCOG00000011607	sbno1	81	85.843	ENSPVAG00000015304	SBNO1	74	86.103	Pteropus_vampyrus
ENSXCOG00000011607	sbno1	99	85.076	ENSPNYG00000004291	sbno1	89	87.110	Pundamilia_nyererei
ENSXCOG00000011607	sbno1	95	81.767	ENSPNAG00000015622	sbno1	89	80.720	Pygocentrus_nattereri
ENSXCOG00000011607	sbno1	91	83.038	ENSRNOG00000001064	Sbno1	97	75.386	Rattus_norvegicus
ENSXCOG00000011607	sbno1	90	85.602	ENSRROG00000034230	SBNO1	86	85.827	Rhinopithecus_roxellana
ENSXCOG00000011607	sbno1	95	70.698	ENSSBOG00000015422	SBNO1	88	72.130	Saimiri_boliviensis_boliviensis
ENSXCOG00000011607	sbno1	99	78.824	ENSSFOG00015019025	sbno1	89	80.239	Scleropages_formosus
ENSXCOG00000011607	sbno1	99	87.219	ENSSMAG00000013640	sbno1	88	88.627	Scophthalmus_maximus
ENSXCOG00000011607	sbno1	99	87.822	ENSSDUG00000023480	sbno1	89	89.111	Seriola_dumerili
ENSXCOG00000011607	sbno1	99	87.705	ENSSLDG00000007928	sbno1	88	90.024	Seriola_lalandi_dorsalis
ENSXCOG00000011607	sbno1	83	81.069	ENSSARG00000002594	SBNO1	77	81.027	Sorex_araneus
ENSXCOG00000011607	sbno1	95	75.632	ENSSPUG00000012640	SBNO1	87	75.612	Sphenodon_punctatus
ENSXCOG00000011607	sbno1	99	86.885	ENSSPAG00000016244	sbno1	89	88.489	Stegastes_partitus
ENSXCOG00000011607	sbno1	95	75.142	ENSSSCG00000009776	SBNO1	89	74.402	Sus_scrofa
ENSXCOG00000011607	sbno1	95	75.606	ENSTGUG00000005380	SBNO1	88	75.060	Taeniopygia_guttata
ENSXCOG00000011607	sbno1	99	81.008	ENSTRUG00000018490	sbno1	89	83.293	Takifugu_rubripes
ENSXCOG00000011607	sbno1	94	80.888	ENSTNIG00000013506	sbno1	99	82.642	Tetraodon_nigroviridis
ENSXCOG00000011607	sbno1	95	75.180	ENSUAMG00000019671	SBNO1	89	74.422	Ursus_americanus
ENSXCOG00000011607	sbno1	95	75.180	ENSUMAG00000004002	SBNO1	89	74.422	Ursus_maritimus
ENSXCOG00000011607	sbno1	99	67.095	ENSVPAG00000007024	SBNO1	88	69.489	Vicugna_pacos
ENSXCOG00000011607	sbno1	95	75.180	ENSVVUG00000027807	SBNO1	89	74.422	Vulpes_vulpes
ENSXCOG00000011607	sbno1	95	72.472	ENSXETG00000031930	SBNO1	98	66.960	Xenopus_tropicalis
ENSXCOG00000011607	sbno1	99	95.390	ENSXMAG00000002140	sbno1	89	95.516	Xiphophorus_maculatus