EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: ENSXCOG00000011828 (Gene tree)
Gene ID: -
Gene Symbol: srrm1
Alias: wu:fb34f04|wu:fb38b06|zgc:63802
Full Name: serine/arginine repetitive matrix 1
Gene Type: protein_coding
Species: Xiphophorus_couchianus
Status: putative
Strand: Minus strand
Length: 11539 bases
Position: chrKQ557211.1:13467377-13478915
Accession: ZDB-GENE-040426-2789
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSXCOP00000015704	PWI	PF01480.17	1.8e-31	1	1
ENSXCOP00000015701	PWI	PF01480.17	1.4e-30	1	1
ENSXCOP00000015705	PWI	PF01480.17	2.6e-14	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSXCOT00000015895	-	2577	-	ENSXCOP00000015701	858 (aa)	-	-
ENSXCOT00000015899	-	306	-	ENSXCOP00000015705	101 (aa)	-	-
ENSXCOT00000015898	-	720	-	ENSXCOP00000015704	239 (aa)	-	-

Gene Model

Click here to download ENSXCOG00000011828's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSXCOG00000011828's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSXCOG00000011828	srrm1	98	82.716	ENSAPOG00000001170	srrm1	99	100.000	Acanthochromis_polyacanthus
ENSXCOG00000011828	srrm1	99	78.059	ENSDARG00000001244	srrm1	99	96.154	Danio_rerio
ENSXCOG00000011828	srrm1	77	97.436	ENSELUG00000003385	srrm1	99	97.436	Esox_lucius
ENSXCOG00000011828	srrm1	77	100.000	ENSGACG00000007266	srrm1	88	73.750	Gasterosteus_aculeatus
ENSXCOG00000011828	srrm1	99	84.016	ENSOMEG00000014110	srrm1	74	100.000	Oryzias_melastigma
ENSXCOG00000011828	srrm1	98	99.153	ENSPLAG00000006807	srrm1	99	100.000	Poecilia_latipinna
ENSXCOG00000011828	srrm1	98	99.153	ENSPLAG00000002058	srrm1	100	97.030	Poecilia_latipinna
ENSXCOG00000011828	srrm1	99	98.739	ENSPREG00000002652	srrm1	100	88.269	Poecilia_reticulata