EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSXCOG00000012296 (Gene tree)
Gene ID: -
Gene Symbol: si:dkey-37o8.1
Alias: fi12b10|wu:fi12b10
Full Name: si:dkey-37o8.1
Gene Type: protein_coding
Species: Xiphophorus_couchianus
Status: putative
Strand: Plus strand
Length: 2723 bases
Position: chrKQ557214.1:15293203-15295925
Accession: ZDB-GENE-030131-5667
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSXCOP00000016271	GTP_EFTU	PF00009.27	9.1e-54	1	1
ENSXCOP00000016267	GTP_EFTU	PF00009.27	1.1e-21	1	1
ENSXCOP00000016271	MMR_HSR1	PF01926.23	5.3e-08	1	1
ENSXCOP00000016271	GTP_EFTU_D2	PF03144.25	9.5e-13	1	1
ENSXCOP00000016271	GTP_EFTU_D3	PF03143.17	8.8e-35	1	1
ENSXCOP00000016267	GTP_EFTU_D3	PF03143.17	5.3e-23	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSXCOT00000016477	-	1359	-	ENSXCOP00000016271	452 (aa)	-	-
ENSXCOT00000016473	-	525	-	ENSXCOP00000016267	174 (aa)	-	-

Gene Model

Click here to download ENSXCOG00000012296's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSXCOG00000012296's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSXCOG00000012296	si:dkey-37o8.1	100	76.923	ENSXCOG00000011374	EEF1A1	99	68.410
ENSXCOG00000012296	si:dkey-37o8.1	93	35.849	ENSXCOG00000016099	gspt1l	83	35.849
ENSXCOG00000012296	si:dkey-37o8.1	96	39.052	ENSXCOG00000005323	hbs1l	63	39.052
ENSXCOG00000012296	si:dkey-37o8.1	90	67.633	ENSXCOG00000013465	eef1a1b	100	67.633
ENSXCOG00000012296	si:dkey-37o8.1	99	67.411	ENSXCOG00000001542	-	98	76.829
ENSXCOG00000012296	si:dkey-37o8.1	98	75.824	ENSXCOG00000013395	-	99	68.410
ENSXCOG00000012296	si:dkey-37o8.1	97	36.878	ENSXCOG00000003084	-	86	36.961

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSXCOG00000012296	si:dkey-37o8.1	98	90.337	ENSAPOG00000016459	si:dkey-37o8.1	98	90.337	Acanthochromis_polyacanthus
ENSXCOG00000012296	si:dkey-37o8.1	98	87.082	ENSACIG00000020985	si:dkey-37o8.1	84	87.082	Amphilophus_citrinellus
ENSXCOG00000012296	si:dkey-37o8.1	100	91.209	ENSAOCG00000002663	si:dkey-37o8.1	99	89.868	Amphiprion_ocellaris
ENSXCOG00000012296	si:dkey-37o8.1	100	91.209	ENSAPEG00000012670	si:dkey-37o8.1	99	89.868	Amphiprion_percula
ENSXCOG00000012296	si:dkey-37o8.1	92	91.148	ENSATEG00000002217	si:dkey-37o8.1	98	91.148	Anabas_testudineus
ENSXCOG00000012296	si:dkey-37o8.1	98	89.888	ENSACLG00000003519	si:dkey-37o8.1	98	89.888	Astatotilapia_calliptera
ENSXCOG00000012296	si:dkey-37o8.1	100	84.615	ENSAMXG00000002728	si:dkey-37o8.1	99	83.736	Astyanax_mexicanus
ENSXCOG00000012296	si:dkey-37o8.1	99	71.397	ENSCPBG00000020570	-	89	71.556	Chrysemys_picta_bellii
ENSXCOG00000012296	si:dkey-37o8.1	98	84.855	ENSCSEG00000019807	si:dkey-37o8.1	98	84.141	Cynoglossus_semilaevis
ENSXCOG00000012296	si:dkey-37o8.1	99	96.703	ENSCVAG00000009828	si:dkey-37o8.1	99	93.363	Cyprinodon_variegatus
ENSXCOG00000012296	si:dkey-37o8.1	100	81.319	ENSDARG00000071727	si:dkey-37o8.1	94	80.879	Danio_rerio
ENSXCOG00000012296	si:dkey-37o8.1	100	86.813	ENSELUG00000007495	si:dkey-37o8.1	99	83.516	Esox_lucius
ENSXCOG00000012296	si:dkey-37o8.1	100	98.901	ENSFHEG00000017452	si:dkey-37o8.1	99	93.612	Fundulus_heteroclitus
ENSXCOG00000012296	si:dkey-37o8.1	98	86.813	ENSGMOG00000006122	si:dkey-37o8.1	99	79.823	Gadus_morhua
ENSXCOG00000012296	si:dkey-37o8.1	95	100.000	ENSGAFG00000000367	si:dkey-37o8.1	99	90.112	Gambusia_affinis
ENSXCOG00000012296	si:dkey-37o8.1	100	91.209	ENSGACG00000004505	si:dkey-37o8.1	99	86.784	Gasterosteus_aculeatus
ENSXCOG00000012296	si:dkey-37o8.1	97	73.409	ENSGAGG00000007724	-	93	77.885	Gopherus_agassizii
ENSXCOG00000012296	si:dkey-37o8.1	98	89.663	ENSHBUG00000015515	si:dkey-37o8.1	98	89.663	Haplochromis_burtoni
ENSXCOG00000012296	si:dkey-37o8.1	97	84.615	ENSHCOG00000001215	si:dkey-37o8.1	99	80.134	Hippocampus_comes
ENSXCOG00000012296	si:dkey-37o8.1	98	85.714	ENSIPUG00000004067	si:dkey-37o8.1	99	82.198	Ictalurus_punctatus
ENSXCOG00000012296	si:dkey-37o8.1	100	94.505	ENSKMAG00000015910	si:dkey-37o8.1	99	92.070	Kryptolebias_marmoratus
ENSXCOG00000012296	si:dkey-37o8.1	97	92.308	ENSLBEG00000021334	si:dkey-37o8.1	89	89.732	Labrus_bergylta
ENSXCOG00000012296	si:dkey-37o8.1	98	80.220	ENSLACG00000003948	si:dkey-37o8.1	98	74.723	Latimeria_chalumnae
ENSXCOG00000012296	si:dkey-37o8.1	100	80.044	ENSLOCG00000011245	si:dkey-37o8.1	99	80.044	Lepisosteus_oculatus
ENSXCOG00000012296	si:dkey-37o8.1	99	74.554	ENSMAMG00000009907	si:dkey-37o8.1	94	74.554	Mastacembelus_armatus
ENSXCOG00000012296	si:dkey-37o8.1	98	89.888	ENSMZEG00005018358	si:dkey-37o8.1	98	89.888	Maylandia_zebra
ENSXCOG00000012296	si:dkey-37o8.1	98	88.539	ENSMMOG00000004111	si:dkey-37o8.1	97	88.539	Mola_mola
ENSXCOG00000012296	si:dkey-37o8.1	96	80.734	ENSMALG00000017152	si:dkey-37o8.1	99	80.734	Monopterus_albus
ENSXCOG00000012296	si:dkey-37o8.1	98	89.438	ENSNBRG00000013552	si:dkey-37o8.1	98	89.438	Neolamprologus_brichardi
ENSXCOG00000012296	si:dkey-37o8.1	98	89.663	ENSONIG00000006165	si:dkey-37o8.1	98	89.663	Oreochromis_niloticus
ENSXCOG00000012296	si:dkey-37o8.1	100	90.110	ENSORLG00000019066	si:dkey-37o8.1	99	90.088	Oryzias_latipes
ENSXCOG00000012296	si:dkey-37o8.1	100	90.110	ENSORLG00020008094	si:dkey-37o8.1	99	90.088	Oryzias_latipes_hni
ENSXCOG00000012296	si:dkey-37o8.1	100	90.308	ENSORLG00015008410	si:dkey-37o8.1	99	90.308	Oryzias_latipes_hsok
ENSXCOG00000012296	si:dkey-37o8.1	100	90.749	ENSOMEG00000001868	si:dkey-37o8.1	99	90.749	Oryzias_melastigma
ENSXCOG00000012296	si:dkey-37o8.1	100	86.813	ENSPKIG00000017246	si:dkey-37o8.1	99	82.237	Paramormyrops_kingsleyae
ENSXCOG00000012296	si:dkey-37o8.1	59	66.058	ENSPSIG00000008080	-	96	66.058	Pelodiscus_sinensis
ENSXCOG00000012296	si:dkey-37o8.1	93	88.199	ENSPMGG00000013752	si:dkey-37o8.1	89	90.698	Periophthalmus_magnuspinnatus
ENSXCOG00000012296	si:dkey-37o8.1	100	96.916	ENSPFOG00000013173	si:dkey-37o8.1	99	96.916	Poecilia_formosa
ENSXCOG00000012296	si:dkey-37o8.1	100	95.374	ENSPLAG00000010405	si:dkey-37o8.1	99	95.374	Poecilia_latipinna
ENSXCOG00000012296	si:dkey-37o8.1	100	96.916	ENSPMEG00000015233	si:dkey-37o8.1	99	96.916	Poecilia_mexicana
ENSXCOG00000012296	si:dkey-37o8.1	100	97.124	ENSPREG00000006280	si:dkey-37o8.1	100	97.124	Poecilia_reticulata
ENSXCOG00000012296	si:dkey-37o8.1	98	89.213	ENSPNYG00000002059	si:dkey-37o8.1	98	89.213	Pundamilia_nyererei
ENSXCOG00000012296	si:dkey-37o8.1	100	83.516	ENSPNAG00000009990	si:dkey-37o8.1	99	83.516	Pygocentrus_nattereri
ENSXCOG00000012296	si:dkey-37o8.1	98	82.103	ENSSFOG00015019070	si:dkey-37o8.1	98	82.103	Scleropages_formosus
ENSXCOG00000012296	si:dkey-37o8.1	99	90.625	ENSSMAG00000016143	si:dkey-37o8.1	98	90.625	Scophthalmus_maximus
ENSXCOG00000012296	si:dkey-37o8.1	100	93.407	ENSSDUG00000009163	si:dkey-37o8.1	99	90.749	Seriola_dumerili
ENSXCOG00000012296	si:dkey-37o8.1	100	93.407	ENSSLDG00000023761	si:dkey-37o8.1	99	90.529	Seriola_lalandi_dorsalis
ENSXCOG00000012296	si:dkey-37o8.1	99	70.667	ENSSPUG00000007467	-	98	70.667	Sphenodon_punctatus
ENSXCOG00000012296	si:dkey-37o8.1	99	90.646	ENSSPAG00000013856	si:dkey-37o8.1	98	90.646	Stegastes_partitus
ENSXCOG00000012296	si:dkey-37o8.1	98	90.293	ENSTRUG00000009006	si:dkey-37o8.1	99	90.293	Takifugu_rubripes
ENSXCOG00000012296	si:dkey-37o8.1	98	89.663	ENSTNIG00000017138	si:dkey-37o8.1	96	89.663	Tetraodon_nigroviridis
ENSXCOG00000012296	si:dkey-37o8.1	97	75.171	ENSXETG00000017744	42Sp50	97	73.836	Xenopus_tropicalis
ENSXCOG00000012296	si:dkey-37o8.1	100	100.000	ENSXMAG00000001998	si:dkey-37o8.1	99	99.119	Xiphophorus_maculatus