EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSXCOG00000012535 (Gene tree)
Gene ID: -
Gene Symbol: -
Alias: -
Full Name: -
Gene Type: protein_coding
Species: Xiphophorus_couchianus
Status: putative
Strand: Minus strand
Length: 17756 bases
Position: chrKQ557204.1:32658812-32676567
Accession: -
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSXCOP00000016603	PARP	PF00644.20	1.4e-30	1	1
ENSXCOP00000016602	PARP	PF00644.20	3.6e-26	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSXCOT00000016818	-	819	-	ENSXCOP00000016603	272 (aa)	-	-
ENSXCOT00000016817	-	4671	-	ENSXCOP00000016602	1556 (aa)	-	-

Gene Model

Click here to download ENSXCOG00000012535's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSXCOG00000012535's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSXCOG00000012535	-	99	45.620	ENSXCOG00000014707	-	87	58.278
ENSXCOG00000012535	-	71	31.122	ENSXCOG00000013444	-	76	31.892
ENSXCOG00000012535	-	67	38.021	ENSXCOG00000003615	-	60	37.234
ENSXCOG00000012535	-	59	47.205	ENSXCOG00000014714	-	76	47.205
ENSXCOG00000012535	-	91	31.560	ENSXCOG00000013445	PARP11	89	31.560
ENSXCOG00000012535	-	52	47.552	ENSXCOG00000006581	-	90	47.552

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSXCOG00000012535	-	94	70.968	ENSAPOG00000002274	-	93	70.769	Acanthochromis_polyacanthus
ENSXCOG00000012535	-	64	60.571	ENSACIG00000008604	-	83	60.571	Amphilophus_citrinellus
ENSXCOG00000012535	-	71	58.911	ENSACIG00000001702	-	90	58.911	Amphilophus_citrinellus
ENSXCOG00000012535	-	56	78.146	ENSACIG00000014929	-	85	76.056	Amphilophus_citrinellus
ENSXCOG00000012535	-	100	61.538	ENSAOCG00000020608	-	88	74.342	Amphiprion_ocellaris
ENSXCOG00000012535	-	100	61.172	ENSAPEG00000022069	-	74	72.152	Amphiprion_percula
ENSXCOG00000012535	-	100	63.043	ENSATEG00000012173	-	57	73.684	Anabas_testudineus
ENSXCOG00000012535	-	100	66.058	ENSACLG00000005600	-	80	66.058	Astatotilapia_calliptera
ENSXCOG00000012535	-	98	64.179	ENSACLG00000005627	-	64	74.834	Astatotilapia_calliptera
ENSXCOG00000012535	-	93	36.466	ENSAMXG00000010209	-	82	47.458	Astyanax_mexicanus
ENSXCOG00000012535	-	99	56.044	ENSAMXG00000010091	-	88	54.589	Astyanax_mexicanus
ENSXCOG00000012535	-	99	53.650	ENSAMXG00000031328	-	69	51.961	Astyanax_mexicanus
ENSXCOG00000012535	-	98	59.551	ENSCSEG00000009834	-	81	59.551	Cynoglossus_semilaevis
ENSXCOG00000012535	-	90	74.899	ENSCVAG00000000686	-	99	74.899	Cyprinodon_variegatus
ENSXCOG00000012535	-	99	83.871	ENSCVAG00000009352	-	94	83.871	Cyprinodon_variegatus
ENSXCOG00000012535	-	93	66.000	ENSDARG00000112454	FO744833.2	86	64.667	Danio_rerio
ENSXCOG00000012535	-	93	32.576	ENSDARG00000098398	CABZ01079480.1	70	39.130	Danio_rerio
ENSXCOG00000012535	-	99	33.451	ENSELUG00000004826	-	65	39.869	Esox_lucius
ENSXCOG00000012535	-	99	68.212	ENSELUG00000013643	-	93	68.212	Esox_lucius
ENSXCOG00000012535	-	100	56.410	ENSFHEG00000011780	-	90	56.410	Fundulus_heteroclitus
ENSXCOG00000012535	-	99	33.099	ENSGMOG00000011217	-	55	33.099	Gadus_morhua
ENSXCOG00000012535	-	100	90.809	ENSGAFG00000015867	-	100	90.809	Gambusia_affinis
ENSXCOG00000012535	-	99	64.074	ENSHBUG00000015143	-	64	74.834	Haplochromis_burtoni
ENSXCOG00000012535	-	71	72.165	ENSHBUG00000013327	-	58	77.273	Haplochromis_burtoni
ENSXCOG00000012535	-	100	65.568	ENSHBUG00000015159	-	93	65.568	Haplochromis_burtoni
ENSXCOG00000012535	-	99	56.250	ENSIPUG00000019562	-	81	70.149	Ictalurus_punctatus
ENSXCOG00000012535	-	93	35.115	ENSIPUG00000001876	-	54	35.115	Ictalurus_punctatus
ENSXCOG00000012535	-	78	47.619	ENSIPUG00000019762	-	92	47.619	Ictalurus_punctatus
ENSXCOG00000012535	-	99	80.488	ENSKMAG00000010882	-	93	80.488	Kryptolebias_marmoratus
ENSXCOG00000012535	-	98	67.041	ENSLBEG00000026419	-	93	65.193	Labrus_bergylta
ENSXCOG00000012535	-	98	66.292	ENSMAMG00000018261	-	90	66.292	Mastacembelus_armatus
ENSXCOG00000012535	-	99	66.914	ENSMAMG00000018192	-	64	78.289	Mastacembelus_armatus
ENSXCOG00000012535	-	99	74.834	ENSMZEG00005002061	-	93	74.834	Maylandia_zebra
ENSXCOG00000012535	-	98	64.179	ENSMZEG00005027858	-	99	64.179	Maylandia_zebra
ENSXCOG00000012535	-	100	66.176	ENSMZEG00005027852	-	70	75.497	Maylandia_zebra
ENSXCOG00000012535	-	100	52.112	ENSMZEG00005027856	-	100	52.112	Maylandia_zebra
ENSXCOG00000012535	-	100	65.934	ENSMZEG00005002038	-	57	78.289	Maylandia_zebra
ENSXCOG00000012535	-	93	72.368	ENSMMOG00000010419	-	96	72.368	Mola_mola
ENSXCOG00000012535	-	99	64.706	ENSMALG00000004165	-	68	64.706	Monopterus_albus
ENSXCOG00000012535	-	100	61.172	ENSNBRG00000003116	-	90	61.172	Neolamprologus_brichardi
ENSXCOG00000012535	-	98	64.179	ENSNBRG00000002998	-	99	64.179	Neolamprologus_brichardi
ENSXCOG00000012535	-	100	66.176	ENSONIG00000000241	-	70	75.497	Oreochromis_niloticus
ENSXCOG00000012535	-	100	75.497	ENSONIG00000000234	-	93	75.497	Oreochromis_niloticus
ENSXCOG00000012535	-	99	77.483	ENSORLG00000017386	-	93	77.483	Oryzias_latipes
ENSXCOG00000012535	-	99	76.821	ENSORLG00000017404	-	93	76.821	Oryzias_latipes
ENSXCOG00000012535	-	100	65.441	ENSORLG00020014210	-	72	76.821	Oryzias_latipes_hni
ENSXCOG00000012535	-	100	64.338	ENSORLG00020014046	-	100	65.625	Oryzias_latipes_hni
ENSXCOG00000012535	-	99	74.834	ENSORLG00015004253	-	94	74.834	Oryzias_latipes_hsok
ENSXCOG00000012535	-	100	65.074	ENSORLG00015004157	-	100	66.406	Oryzias_latipes_hsok
ENSXCOG00000012535	-	98	67.399	ENSOMEG00000009413	-	99	67.399	Oryzias_melastigma
ENSXCOG00000012535	-	99	54.759	ENSOMEG00000009483	-	99	54.819	Oryzias_melastigma
ENSXCOG00000012535	-	85	44.444	ENSPKIG00000004064	-	84	50.000	Paramormyrops_kingsleyae
ENSXCOG00000012535	-	99	58.088	ENSPMGG00000011629	-	95	58.088	Periophthalmus_magnuspinnatus
ENSXCOG00000012535	-	100	93.750	ENSPFOG00000015738	-	90	93.631	Poecilia_formosa
ENSXCOG00000012535	-	73	93.467	ENSPLAG00000022742	-	58	96.970	Poecilia_latipinna
ENSXCOG00000012535	-	100	94.118	ENSPMEG00000003192	-	81	94.118	Poecilia_mexicana
ENSXCOG00000012535	-	100	90.809	ENSPREG00000017145	-	100	90.809	Poecilia_reticulata
ENSXCOG00000012535	-	100	66.912	ENSPNYG00000003575	-	81	66.912	Pundamilia_nyererei
ENSXCOG00000012535	-	96	64.504	ENSPNYG00000023890	-	87	64.504	Pundamilia_nyererei
ENSXCOG00000012535	-	97	77.124	ENSPNYG00000006865	-	93	77.124	Pundamilia_nyererei
ENSXCOG00000012535	-	100	65.568	ENSPNYG00000008208	-	93	65.568	Pundamilia_nyererei
ENSXCOG00000012535	-	99	56.934	ENSPNAG00000026750	-	91	56.934	Pygocentrus_nattereri
ENSXCOG00000012535	-	93	35.227	ENSPNAG00000006111	-	54	35.227	Pygocentrus_nattereri
ENSXCOG00000012535	-	93	33.585	ENSPNAG00000005968	-	80	40.523	Pygocentrus_nattereri
ENSXCOG00000012535	-	98	50.000	ENSPNAG00000005029	-	98	50.000	Pygocentrus_nattereri
ENSXCOG00000012535	-	99	57.143	ENSPNAG00000004111	-	92	57.143	Pygocentrus_nattereri
ENSXCOG00000012535	-	99	58.824	ENSSFOG00015006999	-	91	58.824	Scleropages_formosus
ENSXCOG00000012535	-	99	34.146	ENSSFOG00015019732	-	75	41.667	Scleropages_formosus
ENSXCOG00000012535	-	100	77.632	ENSSMAG00000016922	-	99	75.949	Scophthalmus_maximus
ENSXCOG00000012535	-	100	68.132	ENSSDUG00000013560	-	78	69.613	Seriola_dumerili
ENSXCOG00000012535	-	100	66.300	ENSSLDG00000011620	-	93	66.300	Seriola_lalandi_dorsalis
ENSXCOG00000012535	-	99	62.082	ENSSPAG00000014708	-	80	77.612	Stegastes_partitus
ENSXCOG00000012535	-	99	65.031	ENSTRUG00000003423	-	91	65.031	Takifugu_rubripes
ENSXCOG00000012535	-	99	54.380	ENSTRUG00000010891	-	100	54.380	Takifugu_rubripes
ENSXCOG00000012535	-	98	55.224	ENSTNIG00000018877	-	69	65.789	Tetraodon_nigroviridis
ENSXCOG00000012535	-	100	99.632	ENSXMAG00000015158	-	82	100.000	Xiphophorus_maculatus