EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: ENSXCOG00000012590 (Gene tree)
Gene ID: -
Gene Symbol: gfm1
Alias: fc96f12|wu:fc96f12|zgc:154041
Full Name: G elongation factor%2C mitochondrial 1
Gene Type: protein_coding
Species: Xiphophorus_couchianus
Status: putative
Strand: Minus strand
Length: 8139 bases
Position: chrKQ557210.1:9931140-9939278
Accession: ZDB-GENE-061013-79
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSXCOP00000016692	GTP_EFTU	PF00009.27	1.2e-63	1	1
ENSXCOP00000016693	GTP_EFTU	PF00009.27	1.8e-57	1	1
ENSXCOP00000016692	GTP_EFTU_D2	PF03144.25	3.4e-09	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSXCOT00000016907	-	1305	-	ENSXCOP00000016692	434 (aa)	-	-
ENSXCOT00000016908	-	726	-	ENSXCOP00000016693	241 (aa)	-	-

Gene Model

Click here to download ENSXCOG00000012590's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSXCOG00000012590's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSXCOG00000012590	gfm1	95	77.053	ENSG00000168827	GFM1	100	93.333	Homo_sapiens
ENSXCOG00000012590	gfm1	93	87.841	ENSAPOG00000016489	gfm1	57	87.841	Acanthochromis_polyacanthus
ENSXCOG00000012590	gfm1	89	81.654	ENSAMEG00000013542	GFM1	51	81.654	Ailuropoda_melanoleuca
ENSXCOG00000012590	gfm1	93	88.089	ENSAOCG00000006023	gfm1	54	88.089	Amphiprion_ocellaris
ENSXCOG00000012590	gfm1	93	87.841	ENSAPEG00000024499	gfm1	53	89.147	Amphiprion_percula
ENSXCOG00000012590	gfm1	93	86.849	ENSATEG00000013789	gfm1	54	86.849	Anabas_testudineus
ENSXCOG00000012590	gfm1	89	78.553	ENSAPLG00000005022	GFM1	53	78.553	Anas_platyrhynchos
ENSXCOG00000012590	gfm1	89	79.124	ENSACAG00000006829	GFM1	53	79.124	Anolis_carolinensis
ENSXCOG00000012590	gfm1	90	78.061	ENSANAG00000035983	GFM1	52	78.061	Aotus_nancymaae
ENSXCOG00000012590	gfm1	93	89.136	ENSACLG00000016586	gfm1	54	89.136	Astatotilapia_calliptera
ENSXCOG00000012590	gfm1	92	84.236	ENSAMXG00000013435	gfm1	54	84.236	Astyanax_mexicanus
ENSXCOG00000012590	gfm1	89	80.879	ENSBTAG00000027795	GFM1	51	80.879	Bos_taurus
ENSXCOG00000012590	gfm1	94	74.940	ENSCJAG00000000363	GFM1	55	74.940	Callithrix_jacchus
ENSXCOG00000012590	gfm1	91	79.798	ENSCAFG00000009006	GFM1	53	79.798	Canis_familiaris
ENSXCOG00000012590	gfm1	88	87.736	ENSCAFG00020005878	GFM1	85	87.736	Canis_lupus_dingo
ENSXCOG00000012590	gfm1	89	80.879	ENSCHIG00000015220	GFM1	52	80.879	Capra_hircus
ENSXCOG00000012590	gfm1	90	80.102	ENSTSYG00000002013	GFM1	52	80.102	Carlito_syrichta
ENSXCOG00000012590	gfm1	91	67.910	ENSCAPG00000005699	GFM1	52	67.910	Cavia_aperea
ENSXCOG00000012590	gfm1	90	78.894	ENSCPOG00000001194	GFM1	53	78.894	Cavia_porcellus
ENSXCOG00000012590	gfm1	90	78.061	ENSCCAG00000025561	GFM1	52	78.061	Cebus_capucinus
ENSXCOG00000012590	gfm1	97	78.008	ENSCATG00000037622	GFM1	56	75.904	Cercocebus_atys
ENSXCOG00000012590	gfm1	90	78.316	ENSCLAG00000002503	GFM1	52	78.316	Chinchilla_lanigera
ENSXCOG00000012590	gfm1	94	75.904	ENSCSAG00000012162	GFM1	55	75.904	Chlorocebus_sabaeus
ENSXCOG00000012590	gfm1	90	78.316	ENSCHOG00000004867	GFM1	53	78.316	Choloepus_hoffmanni
ENSXCOG00000012590	gfm1	89	79.587	ENSCPBG00000018367	GFM1	52	79.587	Chrysemys_picta_bellii
ENSXCOG00000012590	gfm1	87	58.505	ENSCING00000011960	-	51	58.505	Ciona_intestinalis
ENSXCOG00000012590	gfm1	90	58.883	ENSCSAVG00000008514	-	53	60.743	Ciona_savignyi
ENSXCOG00000012590	gfm1	87	87.081	ENSCANG00000031714	GFM1	96	79.237	Colobus_angolensis_palliatus
ENSXCOG00000012590	gfm1	89	80.311	ENSCGRG00001022095	GFM1	51	80.311	Cricetulus_griseus_chok1gshd
ENSXCOG00000012590	gfm1	89	80.311	ENSCGRG00000012043	GFM1	51	80.311	Cricetulus_griseus_crigri
ENSXCOG00000012590	gfm1	89	85.973	ENSCSEG00000017088	gfm1	51	80.670	Cynoglossus_semilaevis
ENSXCOG00000012590	gfm1	93	90.819	ENSCVAG00000004126	gfm1	54	93.506	Cyprinodon_variegatus
ENSXCOG00000012590	gfm1	89	83.247	ENSDARG00000063624	gfm1	50	85.333	Danio_rerio
ENSXCOG00000012590	gfm1	91	78.283	ENSDORG00000014165	Gfm1	53	78.283	Dipodomys_ordii
ENSXCOG00000012590	gfm1	70	87.574	ENSETEG00000019197	GFM1	50	70.000	Echinops_telfairi
ENSXCOG00000012590	gfm1	86	60.428	ENSEEUG00000000429	GFM1	52	60.428	Erinaceus_europaeus
ENSXCOG00000012590	gfm1	92	83.208	ENSELUG00000014728	gfm1	53	83.208	Esox_lucius
ENSXCOG00000012590	gfm1	89	80.670	ENSFCAG00000013291	GFM1	51	80.670	Felis_catus
ENSXCOG00000012590	gfm1	79	77.616	ENSFALG00000007619	GFM1	51	77.616	Ficedula_albicollis
ENSXCOG00000012590	gfm1	90	77.889	ENSFDAG00000016559	GFM1	53	77.889	Fukomys_damarensis
ENSXCOG00000012590	gfm1	93	90.819	ENSFHEG00000006091	gfm1	54	90.819	Fundulus_heteroclitus
ENSXCOG00000012590	gfm1	86	87.566	ENSGMOG00000010161	gfm1	52	87.566	Gadus_morhua
ENSXCOG00000012590	gfm1	86	81.283	ENSGALG00000009634	GFM1	51	81.283	Gallus_gallus
ENSXCOG00000012590	gfm1	93	93.797	ENSGAFG00000012527	gfm1	54	93.797	Gambusia_affinis
ENSXCOG00000012590	gfm1	93	86.634	ENSGACG00000009864	gfm1	54	86.634	Gasterosteus_aculeatus
ENSXCOG00000012590	gfm1	89	83.796	ENSGAGG00000002769	-	94	83.495	Gopherus_agassizii
ENSXCOG00000012590	gfm1	88	86.730	ENSGGOG00000003085	GFM1	85	86.730	Gorilla_gorilla
ENSXCOG00000012590	gfm1	93	89.136	ENSHBUG00000002120	gfm1	54	89.136	Haplochromis_burtoni
ENSXCOG00000012590	gfm1	90	78.061	ENSHGLG00000016855	GFM1	52	78.061	Heterocephalus_glaber_female
ENSXCOG00000012590	gfm1	90	78.061	ENSHGLG00100013049	GFM1	52	78.061	Heterocephalus_glaber_male
ENSXCOG00000012590	gfm1	97	81.967	ENSHCOG00000007638	gfm1	71	85.468	Hippocampus_comes
ENSXCOG00000012590	gfm1	89	86.047	ENSIPUG00000005873	gfm1	52	86.047	Ictalurus_punctatus
ENSXCOG00000012590	gfm1	87	80.211	ENSSTOG00000010150	GFM1	51	80.211	Ictidomys_tridecemlineatus
ENSXCOG00000012590	gfm1	87	80.423	ENSJJAG00000016447	Gfm1	50	80.423	Jaculus_jaculus
ENSXCOG00000012590	gfm1	92	88.586	ENSKMAG00000020768	gfm1	54	88.586	Kryptolebias_marmoratus
ENSXCOG00000012590	gfm1	93	88.337	ENSLBEG00000021315	gfm1	59	88.337	Labrus_bergylta
ENSXCOG00000012590	gfm1	86	81.600	ENSLACG00000012295	GFM1	51	81.600	Latimeria_chalumnae
ENSXCOG00000012590	gfm1	92	72.927	ENSLOCG00000003778	gfm1	56	72.927	Lepisosteus_oculatus
ENSXCOG00000012590	gfm1	90	78.316	ENSLAFG00000010945	GFM1	54	78.316	Loxodonta_africana
ENSXCOG00000012590	gfm1	95	79.661	ENSMFAG00000035731	GFM1	96	79.661	Macaca_fascicularis
ENSXCOG00000012590	gfm1	95	79.661	ENSMMUG00000004961	GFM1	96	79.661	Macaca_mulatta
ENSXCOG00000012590	gfm1	95	79.661	ENSMNEG00000033245	GFM1	96	79.661	Macaca_nemestrina
ENSXCOG00000012590	gfm1	90	78.827	ENSMLEG00000030908	GFM1	53	78.827	Mandrillus_leucophaeus
ENSXCOG00000012590	gfm1	93	88.337	ENSMAMG00000011760	gfm1	54	88.337	Mastacembelus_armatus
ENSXCOG00000012590	gfm1	93	89.136	ENSMZEG00005016639	gfm1	54	89.136	Maylandia_zebra
ENSXCOG00000012590	gfm1	86	80.481	ENSMGAG00000010641	GFM1	50	80.481	Meleagris_gallopavo
ENSXCOG00000012590	gfm1	90	79.795	ENSMAUG00000000611	Gfm1	52	79.795	Mesocricetus_auratus
ENSXCOG00000012590	gfm1	90	80.102	ENSMICG00000049086	GFM1	52	80.102	Microcebus_murinus
ENSXCOG00000012590	gfm1	90	79.795	ENSMOCG00000000465	Gfm1	52	79.795	Microtus_ochrogaster
ENSXCOG00000012590	gfm1	86	90.400	ENSMMOG00000012538	gfm1	50	90.400	Mola_mola
ENSXCOG00000012590	gfm1	87	81.217	ENSMODG00000015673	GFM1	51	81.217	Monodelphis_domestica
ENSXCOG00000012590	gfm1	89	86.528	ENSMALG00000012508	gfm1	51	86.528	Monopterus_albus
ENSXCOG00000012590	gfm1	89	82.124	MGP_CAROLIEiJ_G0025052	Gfm1	72	82.124	Mus_caroli
ENSXCOG00000012590	gfm1	89	81.606	ENSMUSG00000027774	Gfm1	51	81.606	Mus_musculus
ENSXCOG00000012590	gfm1	89	81.865	MGP_PahariEiJ_G0026495	Gfm1	72	81.865	Mus_pahari
ENSXCOG00000012590	gfm1	89	81.606	MGP_SPRETEiJ_G0025994	Gfm1	72	81.606	Mus_spretus
ENSXCOG00000012590	gfm1	90	80.402	ENSMPUG00000002859	GFM1	53	80.402	Mustela_putorius_furo
ENSXCOG00000012590	gfm1	89	80.155	ENSMLUG00000000452	GFM1	51	80.155	Myotis_lucifugus
ENSXCOG00000012590	gfm1	93	77.228	ENSNGAG00000012375	Gfm1	54	77.228	Nannospalax_galili
ENSXCOG00000012590	gfm1	89	91.237	ENSNBRG00000004631	gfm1	53	91.237	Neolamprologus_brichardi
ENSXCOG00000012590	gfm1	88	87.204	ENSNLEG00000004176	GFM1	85	87.204	Nomascus_leucogenys
ENSXCOG00000012590	gfm1	87	82.011	ENSMEUG00000007784	GFM1	55	82.011	Notamacropus_eugenii
ENSXCOG00000012590	gfm1	89	78.553	ENSOPRG00000009860	GFM1	52	78.553	Ochotona_princeps
ENSXCOG00000012590	gfm1	90	80.102	ENSODEG00000004316	GFM1	52	80.102	Octodon_degus
ENSXCOG00000012590	gfm1	93	89.630	ENSONIG00000003772	gfm1	54	89.630	Oreochromis_niloticus
ENSXCOG00000012590	gfm1	51	72.973	ENSOANG00000021192	-	80	72.973	Ornithorhynchus_anatinus
ENSXCOG00000012590	gfm1	68	87.805	ENSOANG00000013873	-	91	87.879	Ornithorhynchus_anatinus
ENSXCOG00000012590	gfm1	90	80.612	ENSOCUG00000013561	GFM1	52	80.612	Oryctolagus_cuniculus
ENSXCOG00000012590	gfm1	87	89.920	ENSORLG00000006487	gfm1	53	89.920	Oryzias_latipes
ENSXCOG00000012590	gfm1	92	87.811	ENSORLG00020003362	gfm1	54	87.811	Oryzias_latipes_hni
ENSXCOG00000012590	gfm1	92	87.562	ENSORLG00015005829	gfm1	54	87.562	Oryzias_latipes_hsok
ENSXCOG00000012590	gfm1	92	88.806	ENSOMEG00000012894	gfm1	54	88.806	Oryzias_melastigma
ENSXCOG00000012590	gfm1	90	79.592	ENSOGAG00000008298	GFM1	52	79.592	Otolemur_garnettii
ENSXCOG00000012590	gfm1	91	79.949	ENSOARG00000002409	GFM1	54	79.949	Ovis_aries
ENSXCOG00000012590	gfm1	88	86.730	ENSPPAG00000033881	GFM1	85	86.730	Pan_paniscus
ENSXCOG00000012590	gfm1	89	80.670	ENSPPRG00000009281	GFM1	51	80.670	Panthera_pardus
ENSXCOG00000012590	gfm1	89	80.670	ENSPTIG00000012416	GFM1	51	80.670	Panthera_tigris_altaica
ENSXCOG00000012590	gfm1	88	86.730	ENSPTRG00000015570	GFM1	85	86.730	Pan_troglodytes
ENSXCOG00000012590	gfm1	95	79.661	ENSPANG00000016512	GFM1	96	79.661	Papio_anubis
ENSXCOG00000012590	gfm1	86	85.791	ENSPKIG00000004876	gfm1	50	85.791	Paramormyrops_kingsleyae
ENSXCOG00000012590	gfm1	92	77.750	ENSPSIG00000012567	GFM1	53	77.750	Pelodiscus_sinensis
ENSXCOG00000012590	gfm1	90	83.796	ENSPMGG00000014068	gfm1	73	89.000	Periophthalmus_magnuspinnatus
ENSXCOG00000012590	gfm1	89	80.052	ENSPEMG00000008942	Gfm1	51	80.052	Peromyscus_maniculatus_bairdii
ENSXCOG00000012590	gfm1	89	80.311	ENSPCIG00000020195	GFM1	59	81.481	Phascolarctos_cinereus
ENSXCOG00000012590	gfm1	93	93.052	ENSPFOG00000011022	gfm1	54	93.052	Poecilia_formosa
ENSXCOG00000012590	gfm1	93	93.300	ENSPLAG00000019585	gfm1	57	93.300	Poecilia_latipinna
ENSXCOG00000012590	gfm1	93	92.804	ENSPMEG00000012376	gfm1	54	92.804	Poecilia_mexicana
ENSXCOG00000012590	gfm1	93	92.556	ENSPREG00000001332	gfm1	51	92.556	Poecilia_reticulata
ENSXCOG00000012590	gfm1	90	79.337	ENSPPYG00000014244	GFM1	52	79.337	Pongo_abelii
ENSXCOG00000012590	gfm1	85	76.613	ENSPCAG00000008934	GFM1	53	76.613	Procavia_capensis
ENSXCOG00000012590	gfm1	90	80.102	ENSPCOG00000022259	GFM1	52	80.102	Propithecus_coquereli
ENSXCOG00000012590	gfm1	89	79.381	ENSPVAG00000013605	GFM1	50	81.333	Pteropus_vampyrus
ENSXCOG00000012590	gfm1	93	89.136	ENSPNYG00000006037	gfm1	54	89.136	Pundamilia_nyererei
ENSXCOG00000012590	gfm1	89	84.794	ENSPNAG00000001237	gfm1	52	84.794	Pygocentrus_nattereri
ENSXCOG00000012590	gfm1	90	80.051	ENSRNOG00000012873	Gfm1	52	80.051	Rattus_norvegicus
ENSXCOG00000012590	gfm1	87	87.081	ENSRBIG00000031363	GFM1	96	79.237	Rhinopithecus_bieti
ENSXCOG00000012590	gfm1	87	87.081	ENSRROG00000031081	GFM1	96	79.237	Rhinopithecus_roxellana
ENSXCOG00000012590	gfm1	88	85.308	ENSSBOG00000023252	GFM1	85	85.308	Saimiri_boliviensis_boliviensis
ENSXCOG00000012590	gfm1	90	79.397	ENSSHAG00000017772	GFM1	53	79.798	Sarcophilus_harrisii
ENSXCOG00000012590	gfm1	89	83.805	ENSSFOG00015003117	gfm1	52	85.224	Scleropages_formosus
ENSXCOG00000012590	gfm1	93	85.608	ENSSMAG00000013221	gfm1	52	87.629	Scophthalmus_maximus
ENSXCOG00000012590	gfm1	94	86.732	ENSSDUG00000018665	gfm1	54	86.732	Seriola_dumerili
ENSXCOG00000012590	gfm1	94	86.486	ENSSLDG00000020606	gfm1	54	86.486	Seriola_lalandi_dorsalis
ENSXCOG00000012590	gfm1	90	77.121	ENSSPUG00000018686	GFM1	56	77.121	Sphenodon_punctatus
ENSXCOG00000012590	gfm1	93	88.089	ENSSPAG00000008800	gfm1	54	88.089	Stegastes_partitus
ENSXCOG00000012590	gfm1	89	79.587	ENSSSCG00000025651	GFM1	53	79.587	Sus_scrofa
ENSXCOG00000012590	gfm1	94	85.012	ENSTRUG00000009244	gfm1	54	85.012	Takifugu_rubripes
ENSXCOG00000012590	gfm1	93	86.849	ENSTNIG00000007729	gfm1	54	86.849	Tetraodon_nigroviridis
ENSXCOG00000012590	gfm1	89	80.879	ENSTTRG00000001735	GFM1	51	80.879	Tursiops_truncatus
ENSXCOG00000012590	gfm1	89	81.443	ENSUAMG00000026381	GFM1	51	81.443	Ursus_americanus
ENSXCOG00000012590	gfm1	89	81.443	ENSUMAG00000011268	GFM1	51	81.443	Ursus_maritimus
ENSXCOG00000012590	gfm1	89	76.227	ENSVPAG00000009444	GFM1	51	76.227	Vicugna_pacos
ENSXCOG00000012590	gfm1	92	78.947	ENSVVUG00000020091	GFM1	53	80.620	Vulpes_vulpes
ENSXCOG00000012590	gfm1	89	80.362	ENSXETG00000032551	GFM1	51	80.362	Xenopus_tropicalis
ENSXCOG00000012590	gfm1	93	94.293	ENSXMAG00000000261	gfm1	54	94.293	Xiphophorus_maculatus