EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: ENSXCOG00000012775 (Gene tree)
Gene ID: -
Gene Symbol: prpf8
Alias: id:ibd1257|ik:tdsubc_2a9|im:7141966|tdsubc_2a9|wu:fb37c02|wu:fb73e06|xx:tdsubc_2a9|zgc:56504
Full Name: pre-mRNA processing factor 8
Gene Type: protein_coding
Species: Xiphophorus_couchianus
Status: putative
Strand: Plus strand
Length: 14899 bases
Position: chrKQ557210.1:13619630-13634528
Accession: ZDB-GENE-030131-577
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSXCOP00000016944	RRM_4	PF10598.9	2.6e-48	1	1
ENSXCOP00000016944	U5_2-snRNA_bdg	PF10597.9	6.2e-74	1	1
ENSXCOP00000016944	PRO8NT	PF08082.11	1.9e-87	1	1
ENSXCOP00000016944	U6-snRNA_bdg	PF10596.9	1.5e-89	1	1
ENSXCOP00000016944	PROCN	PF08083.11	2.6e-234	1	1
ENSXCOP00000016944	PRP8_domainIV	PF12134.8	3.6e-130	1	1
ENSXCOP00000016944	PROCT	PF08084.11	2.4e-53	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSXCOT00000017163	-	7026	-	ENSXCOP00000016944	2341 (aa)	-	-

Gene Model

Click here to download ENSXCOG00000012775's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSXCOG00000012775's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSXCOG00000012775	prpf8	100	97.566	ENSG00000174231	PRPF8	100	97.566	Homo_sapiens
ENSXCOG00000012775	prpf8	100	98.975	ENSAPOG00000010079	prpf8	100	98.975	Acanthochromis_polyacanthus
ENSXCOG00000012775	prpf8	100	97.566	ENSAMEG00000007940	PRPF8	100	97.566	Ailuropoda_melanoleuca
ENSXCOG00000012775	prpf8	100	97.197	ENSACIG00000018280	prpf8	100	97.197	Amphilophus_citrinellus
ENSXCOG00000012775	prpf8	100	98.975	ENSAOCG00000010725	prpf8	100	98.975	Amphiprion_ocellaris
ENSXCOG00000012775	prpf8	100	98.975	ENSAPEG00000014397	prpf8	100	98.975	Amphiprion_percula
ENSXCOG00000012775	prpf8	100	98.377	ENSATEG00000010062	prpf8	100	98.377	Anabas_testudineus
ENSXCOG00000012775	prpf8	96	97.998	ENSAPLG00000010357	PRPF8	100	97.998	Anas_platyrhynchos
ENSXCOG00000012775	prpf8	83	96.039	ENSACAG00000014784	PRPF8	99	96.039	Anolis_carolinensis
ENSXCOG00000012775	prpf8	100	97.566	ENSANAG00000032629	PRPF8	100	97.566	Aotus_nancymaae
ENSXCOG00000012775	prpf8	100	98.468	ENSACLG00000020858	prpf8	100	98.468	Astatotilapia_calliptera
ENSXCOG00000012775	prpf8	100	98.462	ENSAMXG00000020291	prpf8	100	98.462	Astyanax_mexicanus
ENSXCOG00000012775	prpf8	100	97.566	ENSBTAG00000011488	PRPF8	100	97.566	Bos_taurus
ENSXCOG00000012775	prpf8	99	86.377	WBGene00004187	prp-8	99	86.894	Caenorhabditis_elegans
ENSXCOG00000012775	prpf8	100	97.566	ENSCJAG00000001911	PRPF8	100	97.566	Callithrix_jacchus
ENSXCOG00000012775	prpf8	100	97.566	ENSCAFG00000019221	PRPF8	100	97.566	Canis_familiaris
ENSXCOG00000012775	prpf8	96	98.081	ENSCAFG00020009943	PRPF8	100	98.081	Canis_lupus_dingo
ENSXCOG00000012775	prpf8	100	97.566	ENSCHIG00000017499	PRPF8	100	97.566	Capra_hircus
ENSXCOG00000012775	prpf8	100	97.566	ENSTSYG00000014120	PRPF8	100	97.566	Carlito_syrichta
ENSXCOG00000012775	prpf8	96	95.857	ENSCAPG00000009459	PRPF8	99	95.857	Cavia_aperea
ENSXCOG00000012775	prpf8	100	97.566	ENSCPOG00000010379	PRPF8	100	97.566	Cavia_porcellus
ENSXCOG00000012775	prpf8	100	97.566	ENSCCAG00000031983	-	100	97.566	Cebus_capucinus
ENSXCOG00000012775	prpf8	100	97.566	ENSCATG00000038595	PRPF8	100	97.566	Cercocebus_atys
ENSXCOG00000012775	prpf8	100	97.566	ENSCLAG00000004388	PRPF8	100	97.566	Chinchilla_lanigera
ENSXCOG00000012775	prpf8	100	97.566	ENSCSAG00000013929	PRPF8	100	97.566	Chlorocebus_sabaeus
ENSXCOG00000012775	prpf8	81	97.333	ENSCHOG00000008590	PRPF8	88	97.333	Choloepus_hoffmanni
ENSXCOG00000012775	prpf8	100	97.438	ENSCPBG00000020409	PRPF8	100	97.438	Chrysemys_picta_bellii
ENSXCOG00000012775	prpf8	98	92.832	ENSCSAVG00000007825	-	100	91.280	Ciona_savignyi
ENSXCOG00000012775	prpf8	100	97.566	ENSCANG00000043088	PRPF8	100	97.566	Colobus_angolensis_palliatus
ENSXCOG00000012775	prpf8	73	99.409	ENSCGRG00000005129	Prpf8	100	99.409	Cricetulus_griseus_crigri
ENSXCOG00000012775	prpf8	100	98.804	ENSCSEG00000007905	prpf8	100	98.804	Cynoglossus_semilaevis
ENSXCOG00000012775	prpf8	100	98.463	ENSDARG00000026180	prpf8	100	98.463	Danio_rerio
ENSXCOG00000012775	prpf8	93	97.797	ENSDNOG00000018471	PRPF8	99	97.797	Dasypus_novemcinctus
ENSXCOG00000012775	prpf8	84	96.328	ENSDORG00000006185	Prpf8	96	96.328	Dipodomys_ordii
ENSXCOG00000012775	prpf8	99	91.150	FBgn0033688	Prp8	97	91.793	Drosophila_melanogaster
ENSXCOG00000012775	prpf8	100	92.186	ENSETEG00000017592	PRPF8	100	92.186	Echinops_telfairi
ENSXCOG00000012775	prpf8	99	93.188	ENSEBUG00000006548	prpf8	99	93.188	Eptatretus_burgeri
ENSXCOG00000012775	prpf8	100	97.566	ENSEASG00005009514	PRPF8	100	97.566	Equus_asinus_asinus
ENSXCOG00000012775	prpf8	97	98.110	ENSECAG00000021318	PRPF8	100	98.110	Equus_caballus
ENSXCOG00000012775	prpf8	67	98.519	ENSEEUG00000012120	-	67	98.519	Erinaceus_europaeus
ENSXCOG00000012775	prpf8	98	97.294	ENSELUG00000007120	prpf8	99	97.294	Esox_lucius
ENSXCOG00000012775	prpf8	100	97.566	ENSFCAG00000006297	PRPF8	100	97.566	Felis_catus
ENSXCOG00000012775	prpf8	100	97.523	ENSFALG00000006628	PRPF8	100	97.523	Ficedula_albicollis
ENSXCOG00000012775	prpf8	100	97.566	ENSFDAG00000004711	PRPF8	100	97.566	Fukomys_damarensis
ENSXCOG00000012775	prpf8	100	99.061	ENSFHEG00000021084	prpf8	100	99.061	Fundulus_heteroclitus
ENSXCOG00000012775	prpf8	100	96.409	ENSGMOG00000002028	prpf8	99	96.409	Gadus_morhua
ENSXCOG00000012775	prpf8	100	97.523	ENSGALG00000002943	PRPF8	100	97.523	Gallus_gallus
ENSXCOG00000012775	prpf8	99	99.360	ENSGAFG00000010337	prpf8	99	99.360	Gambusia_affinis
ENSXCOG00000012775	prpf8	100	98.890	ENSGACG00000008504	prpf8	100	98.676	Gasterosteus_aculeatus
ENSXCOG00000012775	prpf8	100	97.481	ENSGAGG00000008350	PRPF8	100	97.481	Gopherus_agassizii
ENSXCOG00000012775	prpf8	100	97.566	ENSGGOG00000005516	PRPF8	100	97.566	Gorilla_gorilla
ENSXCOG00000012775	prpf8	100	98.548	ENSHBUG00000016192	prpf8	100	98.548	Haplochromis_burtoni
ENSXCOG00000012775	prpf8	100	97.566	ENSHGLG00000012029	PRPF8	100	97.566	Heterocephalus_glaber_female
ENSXCOG00000012775	prpf8	100	97.566	ENSHGLG00100016494	PRPF8	100	97.566	Heterocephalus_glaber_male
ENSXCOG00000012775	prpf8	100	98.719	ENSHCOG00000016414	prpf8	100	98.719	Hippocampus_comes
ENSXCOG00000012775	prpf8	100	98.419	ENSIPUG00000023230	prpf8	100	98.419	Ictalurus_punctatus
ENSXCOG00000012775	prpf8	100	97.566	ENSSTOG00000005128	PRPF8	100	97.566	Ictidomys_tridecemlineatus
ENSXCOG00000012775	prpf8	100	95.431	ENSJJAG00000021159	Prpf8	100	95.431	Jaculus_jaculus
ENSXCOG00000012775	prpf8	99	98.760	ENSKMAG00000016118	prpf8	99	98.760	Kryptolebias_marmoratus
ENSXCOG00000012775	prpf8	100	98.761	ENSLBEG00000026903	prpf8	100	98.761	Labrus_bergylta
ENSXCOG00000012775	prpf8	95	95.452	ENSLACG00000010479	PRPF8	99	98.261	Latimeria_chalumnae
ENSXCOG00000012775	prpf8	99	98.164	ENSLOCG00000005409	prpf8	99	98.164	Lepisosteus_oculatus
ENSXCOG00000012775	prpf8	100	97.566	ENSLAFG00000015445	PRPF8	100	97.566	Loxodonta_africana
ENSXCOG00000012775	prpf8	100	97.566	ENSMFAG00000039995	PRPF8	100	97.566	Macaca_fascicularis
ENSXCOG00000012775	prpf8	100	97.566	ENSMMUG00000004820	PRPF8	100	97.566	Macaca_mulatta
ENSXCOG00000012775	prpf8	100	97.566	ENSMNEG00000035713	PRPF8	100	97.566	Macaca_nemestrina
ENSXCOG00000012775	prpf8	100	97.566	ENSMLEG00000037937	PRPF8	100	97.566	Mandrillus_leucophaeus
ENSXCOG00000012775	prpf8	100	98.975	ENSMAMG00000008919	prpf8	100	98.975	Mastacembelus_armatus
ENSXCOG00000012775	prpf8	100	98.468	ENSMZEG00005015073	prpf8	100	98.468	Maylandia_zebra
ENSXCOG00000012775	prpf8	100	97.523	ENSMGAG00000004769	PRPF8	100	97.523	Meleagris_gallopavo
ENSXCOG00000012775	prpf8	100	97.566	ENSMICG00000010320	PRPF8	100	97.566	Microcebus_murinus
ENSXCOG00000012775	prpf8	100	97.566	ENSMOCG00000016838	Prpf8	100	97.566	Microtus_ochrogaster
ENSXCOG00000012775	prpf8	100	98.377	ENSMMOG00000011887	prpf8	100	98.377	Mola_mola
ENSXCOG00000012775	prpf8	100	97.481	ENSMODG00000010480	PRPF8	100	97.481	Monodelphis_domestica
ENSXCOG00000012775	prpf8	97	98.536	ENSMALG00000003558	prpf8	100	98.536	Monopterus_albus
ENSXCOG00000012775	prpf8	100	97.523	MGP_CAROLIEiJ_G0016740	Prpf8	100	97.523	Mus_caroli
ENSXCOG00000012775	prpf8	100	97.523	ENSMUSG00000020850	Prpf8	100	97.523	Mus_musculus
ENSXCOG00000012775	prpf8	100	97.481	MGP_PahariEiJ_G0017877	Prpf8	100	97.481	Mus_pahari
ENSXCOG00000012775	prpf8	100	97.523	MGP_SPRETEiJ_G0017583	Prpf8	100	97.523	Mus_spretus
ENSXCOG00000012775	prpf8	100	97.566	ENSMPUG00000013227	PRPF8	100	97.566	Mustela_putorius_furo
ENSXCOG00000012775	prpf8	100	97.441	ENSMLUG00000002666	PRPF8	100	97.441	Myotis_lucifugus
ENSXCOG00000012775	prpf8	100	95.816	ENSNGAG00000005305	Prpf8	100	95.816	Nannospalax_galili
ENSXCOG00000012775	prpf8	100	98.511	ENSNBRG00000013127	prpf8	100	98.511	Neolamprologus_brichardi
ENSXCOG00000012775	prpf8	97	96.756	ENSNLEG00000000897	PRPF8	98	96.756	Nomascus_leucogenys
ENSXCOG00000012775	prpf8	98	96.219	ENSMEUG00000015999	PRPF8	100	96.219	Notamacropus_eugenii
ENSXCOG00000012775	prpf8	100	96.072	ENSOPRG00000003102	PRPF8	100	95.985	Ochotona_princeps
ENSXCOG00000012775	prpf8	100	97.566	ENSODEG00000008468	PRPF8	100	97.566	Octodon_degus
ENSXCOG00000012775	prpf8	100	98.511	ENSONIG00000008153	prpf8	100	98.511	Oreochromis_niloticus
ENSXCOG00000012775	prpf8	82	99.065	ENSOANG00000004250	PRPF8	97	99.065	Ornithorhynchus_anatinus
ENSXCOG00000012775	prpf8	100	97.566	ENSOCUG00000000081	PRPF8	100	97.566	Oryctolagus_cuniculus
ENSXCOG00000012775	prpf8	100	98.471	ENSORLG00000008036	prpf8	100	98.513	Oryzias_latipes
ENSXCOG00000012775	prpf8	100	98.429	ENSORLG00020021070	prpf8	100	98.471	Oryzias_latipes_hni
ENSXCOG00000012775	prpf8	100	98.513	ENSORLG00015002340	prpf8	100	98.513	Oryzias_latipes_hsok
ENSXCOG00000012775	prpf8	100	96.941	ENSOMEG00000016866	prpf8	100	96.941	Oryzias_melastigma
ENSXCOG00000012775	prpf8	100	97.441	ENSOARG00000013312	PRPF8	100	97.441	Ovis_aries
ENSXCOG00000012775	prpf8	100	97.566	ENSPPAG00000042753	PRPF8	100	97.566	Pan_paniscus
ENSXCOG00000012775	prpf8	100	97.566	ENSPPRG00000008746	PRPF8	100	97.566	Panthera_pardus
ENSXCOG00000012775	prpf8	100	97.481	ENSPTIG00000019200	PRPF8	100	97.481	Panthera_tigris_altaica
ENSXCOG00000012775	prpf8	100	97.566	ENSPTRG00000039576	PRPF8	100	97.566	Pan_troglodytes
ENSXCOG00000012775	prpf8	98	98.132	ENSPANG00000024607	PRPF8	98	98.132	Papio_anubis
ENSXCOG00000012775	prpf8	100	98.380	ENSPKIG00000011201	prpf8	100	98.380	Paramormyrops_kingsleyae
ENSXCOG00000012775	prpf8	100	97.395	ENSPSIG00000013393	PRPF8	100	97.395	Pelodiscus_sinensis
ENSXCOG00000012775	prpf8	100	97.566	ENSPEMG00000021699	Prpf8	100	97.566	Peromyscus_maniculatus_bairdii
ENSXCOG00000012775	prpf8	96	93.808	ENSPMAG00000005438	prpf8	100	93.853	Petromyzon_marinus
ENSXCOG00000012775	prpf8	100	97.481	ENSPCIG00000022603	PRPF8	100	97.992	Phascolarctos_cinereus
ENSXCOG00000012775	prpf8	100	99.152	ENSPFOG00000007005	prpf8	100	99.109	Poecilia_formosa
ENSXCOG00000012775	prpf8	100	97.992	ENSPLAG00000020777	prpf8	100	97.992	Poecilia_latipinna
ENSXCOG00000012775	prpf8	100	99.152	ENSPMEG00000004051	prpf8	100	99.109	Poecilia_mexicana
ENSXCOG00000012775	prpf8	100	99.402	ENSPREG00000021902	prpf8	100	99.402	Poecilia_reticulata
ENSXCOG00000012775	prpf8	100	97.566	ENSPPYG00000007777	PRPF8	100	97.566	Pongo_abelii
ENSXCOG00000012775	prpf8	90	96.287	ENSPCAG00000008938	PRPF8	90	96.287	Procavia_capensis
ENSXCOG00000012775	prpf8	100	97.566	ENSPCOG00000015182	PRPF8	100	97.566	Propithecus_coquereli
ENSXCOG00000012775	prpf8	93	98.614	ENSPVAG00000002134	PRPF8	93	98.614	Pteropus_vampyrus
ENSXCOG00000012775	prpf8	100	98.548	ENSPNYG00000016356	prpf8	100	98.548	Pundamilia_nyererei
ENSXCOG00000012775	prpf8	100	98.590	ENSPNAG00000009247	prpf8	100	98.590	Pygocentrus_nattereri
ENSXCOG00000012775	prpf8	100	97.523	ENSRNOG00000003495	Prpf8	100	97.523	Rattus_norvegicus
ENSXCOG00000012775	prpf8	100	97.566	ENSRBIG00000031219	PRPF8	100	97.635	Rhinopithecus_bieti
ENSXCOG00000012775	prpf8	100	97.566	ENSRROG00000038014	PRPF8	100	97.635	Rhinopithecus_roxellana
ENSXCOG00000012775	prpf8	98	62.473	YHR165C	PRP8	95	62.516	Saccharomyces_cerevisiae
ENSXCOG00000012775	prpf8	100	97.566	ENSSBOG00000029717	PRPF8	100	97.566	Saimiri_boliviensis_boliviensis
ENSXCOG00000012775	prpf8	100	97.438	ENSSHAG00000006167	PRPF8	100	97.438	Sarcophilus_harrisii
ENSXCOG00000012775	prpf8	100	98.506	ENSSFOG00015013905	prpf8	100	98.506	Scleropages_formosus
ENSXCOG00000012775	prpf8	100	98.676	ENSSMAG00000017736	prpf8	100	98.676	Scophthalmus_maximus
ENSXCOG00000012775	prpf8	100	99.060	ENSSDUG00000003029	prpf8	100	99.060	Seriola_dumerili
ENSXCOG00000012775	prpf8	68	99.687	ENSSLDG00000017096	prpf8	100	99.687	Seriola_lalandi_dorsalis
ENSXCOG00000012775	prpf8	87	94.336	ENSSARG00000002892	PRPF8	87	94.336	Sorex_araneus
ENSXCOG00000012775	prpf8	100	97.565	ENSSPUG00000007463	PRPF8	100	97.565	Sphenodon_punctatus
ENSXCOG00000012775	prpf8	100	98.377	ENSSPAG00000015639	prpf8	100	98.377	Stegastes_partitus
ENSXCOG00000012775	prpf8	100	97.566	ENSSSCG00000017817	PRPF8	100	97.566	Sus_scrofa
ENSXCOG00000012775	prpf8	100	97.523	ENSTGUG00000005648	-	100	97.523	Taeniopygia_guttata
ENSXCOG00000012775	prpf8	52	98.604	ENSTGUG00000015597	-	95	98.604	Taeniopygia_guttata
ENSXCOG00000012775	prpf8	100	98.334	ENSTRUG00000015906	prpf8	100	98.334	Takifugu_rubripes
ENSXCOG00000012775	prpf8	95	99.343	ENSTNIG00000003460	prpf8	99	99.343	Tetraodon_nigroviridis
ENSXCOG00000012775	prpf8	93	98.979	ENSTBEG00000006431	PRPF8	93	98.979	Tupaia_belangeri
ENSXCOG00000012775	prpf8	100	96.968	ENSTTRG00000006869	PRPF8	100	96.968	Tursiops_truncatus
ENSXCOG00000012775	prpf8	54	96.445	ENSUAMG00000015644	-	96	96.445	Ursus_americanus
ENSXCOG00000012775	prpf8	100	97.310	ENSUMAG00000009385	PRPF8	100	97.310	Ursus_maritimus
ENSXCOG00000012775	prpf8	71	97.931	ENSVPAG00000006063	-	71	97.931	Vicugna_pacos
ENSXCOG00000012775	prpf8	100	97.566	ENSVVUG00000021695	PRPF8	99	97.566	Vulpes_vulpes
ENSXCOG00000012775	prpf8	100	97.310	ENSXETG00000022259	prpf8	100	97.310	Xenopus_tropicalis
ENSXCOG00000012775	prpf8	100	99.957	ENSXMAG00000008505	prpf8	100	99.957	Xiphophorus_maculatus