EuRBPDB

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  • Description
  • RBDs
  • Transcripts
  • Gene Model
  • PPI
  • Paralogs
  • Orthologs
Description
Ensembl ID
ENSXCOG00000012882 (Gene tree)
Gene ID
-
Gene Symbol
-
Alias
-
Full Name
-
Gene Type
protein_coding
Species
Xiphophorus_couchianus
Status
putative
Strand
Minus strand
Length
12348 bases
Position
chrKQ557210.1:16712560-16724907
Accession
-
RBP type
canonical RBP
Summary
-
RNA binding domains(RBDs)
Protein IDDomain Pfam IDE-value Domain number Total number
ENSXCOP00000017176MMR_HSR1PF01926.234.4e-0711
ENSXCOP00000017086MMR_HSR1PF01926.234.4e-0711
ENSXCOP00000017178MMR_HSR1PF01926.234.4e-0711
ENSXCOP00000017084MMR_HSR1PF01926.234.5e-0711
ENSXCOP00000017130MMR_HSR1PF01926.234.6e-0711
ENSXCOP00000017177MMR_HSR1PF01926.234.6e-0711
ENSXCOP00000017174MMR_HSR1PF01926.234.7e-0711
Transcripts
Transcript IDNameLengthRefSeq ID Protein IDLengthRefSeq IDUniportKB ID
ENSXCOT00000017306-1611-ENSXCOP00000017086536 (aa)--
ENSXCOT00000017304-1623-ENSXCOP00000017084540 (aa)--
ENSXCOT00000017350-1665-ENSXCOP00000017130554 (aa)--
ENSXCOT00000017398-1614-ENSXCOP00000017178537 (aa)--
ENSXCOT00000017394-1644-ENSXCOP00000017174547 (aa)--
ENSXCOT00000017396-1623-ENSXCOP00000017176540 (aa)--
ENSXCOT00000017397-1650-ENSXCOP00000017177549 (aa)--
Gene Model
Click here to download ENSXCOG00000012882's gene model file
Protein-Protein Interaction (PPI)

Clik here to download ENSXCOG00000012882's network
Paralogs
Ensembl IDGene SymbolCoverageIdentiy ParalogGene SymbolCoverageIdentiy
ENSXCOG00000012882-9960.300ENSXCOG00000001781ehd1a9860.300
ENSXCOG00000012882-9969.850ENSXCOG00000008602ehd2b9970.225
ENSXCOG00000012882-7131.313ENSXCOG00000010424srl9032.152
ENSXCOG00000012882-6432.961ENSXCOG00000014584SRL8631.362
Orthologs
Ensembl IDGene SymbolCoverageIdentiy OrthologGene SymbolCoverageIdentiy Species
ENSXCOG00000012882-9865.209ENSG00000024422EHD29964.532Homo_sapiens
ENSXCOG00000012882-9970.130ENSAPOG00000012705ehd2b9970.185Acanthochromis_polyacanthus
ENSXCOG00000012882-9989.720ENSAPOG00000021608-9890.262Acanthochromis_polyacanthus
ENSXCOG00000012882-9865.399ENSAMEG00000015263EHD29865.103Ailuropoda_melanoleuca
ENSXCOG00000012882-9989.225ENSACIG00000011074-9988.972Amphilophus_citrinellus
ENSXCOG00000012882-9990.244ENSAOCG00000002163-9990.244Amphiprion_ocellaris
ENSXCOG00000012882-9969.944ENSAOCG00000006422EHD29970.185Amphiprion_ocellaris
ENSXCOG00000012882-9989.533ENSAPEG00000019382-9890.075Amphiprion_percula
ENSXCOG00000012882-9969.944ENSAPEG00000013956ehd2b9970.185Amphiprion_percula
ENSXCOG00000012882-9986.957ENSATEG00000004166-9986.506Anabas_testudineus
ENSXCOG00000012882-9865.209ENSANAG00000031077EHD29864.916Aotus_nancymaae
ENSXCOG00000012882-9986.629ENSACLG00000005241-9886.891Astatotilapia_calliptera
ENSXCOG00000012882-9969.663ENSACLG00000021088ehd2b9969.794Astatotilapia_calliptera
ENSXCOG00000012882-9966.290ENSAMXG00000013748ehd2a9666.604Astyanax_mexicanus
ENSXCOG00000012882-9865.589ENSBTAG00000021191EHD29865.291Bos_taurus
ENSXCOG00000012882-9865.209ENSCJAG00000011415EHD29864.916Callithrix_jacchus
ENSXCOG00000012882-9865.341ENSCAFG00000004095EHD29865.047Canis_familiaris
ENSXCOG00000012882-9865.589ENSCAFG00020000226EHD29865.291Canis_lupus_dingo
ENSXCOG00000012882-9865.779ENSCHIG00000011896EHD29865.478Capra_hircus
ENSXCOG00000012882-9865.399ENSCAPG00000007033EHD29865.103Cavia_aperea
ENSXCOG00000012882-9865.399ENSCPOG00000026417EHD29865.103Cavia_porcellus
ENSXCOG00000012882-9865.209ENSCCAG00000035777EHD29864.916Cebus_capucinus
ENSXCOG00000012882-9865.399ENSCLAG00000001756EHD29865.103Chinchilla_lanigera
ENSXCOG00000012882-9865.209ENSCSAG00000002930EHD29864.916Chlorocebus_sabaeus
ENSXCOG00000012882-9966.855ENSCPBG00000009041EHD29966.418Chrysemys_picta_bellii
ENSXCOG00000012882-9865.209ENSCANG00000040566EHD29864.916Colobus_angolensis_palliatus
ENSXCOG00000012882-9865.589ENSCGRG00001018635Ehd29865.291Cricetulus_griseus_chok1gshd
ENSXCOG00000012882-9985.607ENSCSEG00000001675-9885.981Cynoglossus_semilaevis
ENSXCOG00000012882-9969.202ENSCSEG00000007149ehd2b9969.259Cynoglossus_semilaevis
ENSXCOG00000012882-9970.315ENSCVAG00000002381ehd2b9970.556Cyprinodon_variegatus
ENSXCOG00000012882-9992.710ENSCVAG00000018998-9893.084Cyprinodon_variegatus
ENSXCOG00000012882-9966.353ENSDARG00000035137ehd2a9866.234Danio_rerio
ENSXCOG00000012882-9970.185ENSDARG00000040362ehd2b9970.240Danio_rerio
ENSXCOG00000012882-9865.019ENSDORG00000011700Ehd29864.728Dipodomys_ordii
ENSXCOG00000012882-9865.209ENSECAG00000028265EHD29864.916Equus_caballus
ENSXCOG00000012882-5472.125ENSEEUG00000000956EHD29671.429Erinaceus_europaeus
ENSXCOG00000012882-9969.388ENSELUG00000021876ehd2b9969.630Esox_lucius
ENSXCOG00000012882-9874.335ENSELUG00000019299ehd2a9874.340Esox_lucius
ENSXCOG00000012882-9865.399ENSFCAG00000029117EHD29865.103Felis_catus
ENSXCOG00000012882-9964.972ENSFDAG00000015675EHD29965.209Fukomys_damarensis
ENSXCOG00000012882-9970.501ENSFHEG00000020637ehd2b9970.741Fundulus_heteroclitus
ENSXCOG00000012882-9993.645ENSFHEG00000002126-9894.007Fundulus_heteroclitus
ENSXCOG00000012882-9978.067ENSGMOG00000000211-9878.399Gadus_morhua
ENSXCOG00000012882-9969.145ENSGMOG00000013367ehd2b9969.944Gadus_morhua
ENSXCOG00000012882-9962.384ENSGALG00000036498EHD29862.664Gallus_gallus
ENSXCOG00000012882-9998.696ENSGAFG00000004457ehd2a9998.696Gambusia_affinis
ENSXCOG00000012882-9969.043ENSGACG00000013023ehd2b9968.889Gasterosteus_aculeatus
ENSXCOG00000012882-9984.053ENSGACG00000007320-9884.428Gasterosteus_aculeatus
ENSXCOG00000012882-9967.043ENSGAGG00000022066EHD29966.604Gopherus_agassizii
ENSXCOG00000012882-9865.209ENSGGOG00000002346EHD29864.916Gorilla_gorilla
ENSXCOG00000012882-9986.629ENSHBUG00000008791-9887.079Haplochromis_burtoni
ENSXCOG00000012882-9969.388ENSHBUG00000009900ehd2b9969.573Haplochromis_burtoni
ENSXCOG00000012882-9865.399ENSHGLG00000017825EHD29865.103Heterocephalus_glaber_female
ENSXCOG00000012882-9865.399ENSHGLG00100017344EHD29865.103Heterocephalus_glaber_male
ENSXCOG00000012882-9970.000ENSHCOG00000017683ehd2b9970.055Hippocampus_comes
ENSXCOG00000012882-9784.733ENSHCOG00000012768-9784.630Hippocampus_comes
ENSXCOG00000012882-9966.102ENSIPUG00000024057ehd2a9865.321Ictalurus_punctatus
ENSXCOG00000012882-9969.388ENSIPUG00000000204Ehd29969.444Ictalurus_punctatus
ENSXCOG00000012882-9865.019ENSJJAG00000008621Ehd29864.728Jaculus_jaculus
ENSXCOG00000012882-9969.017ENSKMAG00000012447ehd2b9969.259Kryptolebias_marmoratus
ENSXCOG00000012882-9988.785ENSKMAG00000003332-9889.326Kryptolebias_marmoratus
ENSXCOG00000012882-9989.513ENSLBEG00000004961-9889.700Labrus_bergylta
ENSXCOG00000012882-9968.058ENSLBEG00000018343ehd2b9968.297Labrus_bergylta
ENSXCOG00000012882-8177.108ENSLACG00000018332ehd2a9277.108Latimeria_chalumnae
ENSXCOG00000012882-9865.209ENSMMUG00000040121EHD29864.916Macaca_mulatta
ENSXCOG00000012882-9988.411ENSMAMG00000004890-9888.785Mastacembelus_armatus
ENSXCOG00000012882-9969.388ENSMZEG00005024162ehd2b9969.573Maylandia_zebra
ENSXCOG00000012882-9986.441ENSMZEG00005005247-9886.704Maylandia_zebra
ENSXCOG00000012882-9865.399ENSMAUG00000010317Ehd29865.103Mesocricetus_auratus
ENSXCOG00000012882-9864.449ENSMICG00000005571EHD29864.165Microcebus_murinus
ENSXCOG00000012882-9865.399ENSMOCG00000007010Ehd29765.779Microtus_ochrogaster
ENSXCOG00000012882-9985.283ENSMMOG00000009001-9985.086Mola_mola
ENSXCOG00000012882-9969.017ENSMALG00000008756ehd2b9969.074Monopterus_albus
ENSXCOG00000012882-9865.589MGP_CAROLIEiJ_G0029219Ehd29978.846Mus_caroli
ENSXCOG00000012882-9865.589ENSMUSG00000074364Ehd29978.846Mus_musculus
ENSXCOG00000012882-9865.399MGP_PahariEiJ_G0021075Ehd29978.846Mus_pahari
ENSXCOG00000012882-9865.399MGP_SPRETEiJ_G0030299Ehd29978.846Mus_spretus
ENSXCOG00000012882-9865.589ENSMPUG00000004466EHD29865.291Mustela_putorius_furo
ENSXCOG00000012882-9865.399ENSNGAG00000018699Ehd29865.103Nannospalax_galili
ENSXCOG00000012882-9987.030ENSNBRG00000002925ehd2a9787.406Neolamprologus_brichardi
ENSXCOG00000012882-9861.977ENSMEUG00000000445EHD29860.517Notamacropus_eugenii
ENSXCOG00000012882-9865.209ENSODEG00000006641EHD29864.916Octodon_degus
ENSXCOG00000012882-9986.064ENSONIG00000005597-9886.517Oreochromis_niloticus
ENSXCOG00000012882-9969.573ENSONIG00000004051ehd2b9969.759Oreochromis_niloticus
ENSXCOG00000012882-9985.634ENSORLG00000012013-9886.168Oryzias_latipes
ENSXCOG00000012882-9969.759ENSORLG00000002244ehd2b9970.000Oryzias_latipes
ENSXCOG00000012882-9969.573ENSORLG00020017051ehd2b9969.815Oryzias_latipes_hni
ENSXCOG00000012882-9985.634ENSORLG00020013250-9886.168Oryzias_latipes_hni
ENSXCOG00000012882-9969.759ENSORLG00015005729ehd29970.000Oryzias_latipes_hsok
ENSXCOG00000012882-9986.007ENSORLG00015021510-9886.542Oryzias_latipes_hsok
ENSXCOG00000012882-9987.127ENSOMEG00000003975-9887.664Oryzias_melastigma
ENSXCOG00000012882-9969.388ENSOMEG00000001261ehd2b9969.815Oryzias_melastigma
ENSXCOG00000012882-9865.399ENSOGAG00000033142EHD29865.103Otolemur_garnettii
ENSXCOG00000012882-9863.619ENSOARG00000011391EHD29263.352Ovis_aries
ENSXCOG00000012882-9863.308ENSPPAG00000039669EHD29863.039Pan_paniscus
ENSXCOG00000012882-9865.399ENSPPRG00000008148EHD29865.103Panthera_pardus
ENSXCOG00000012882-9865.399ENSPTIG00000018608EHD29865.103Panthera_tigris_altaica
ENSXCOG00000012882-9865.458ENSPTRG00000011214EHD29865.160Pan_troglodytes
ENSXCOG00000012882-9865.458ENSPTRG00000046930EHD29865.160Pan_troglodytes
ENSXCOG00000012882-9865.209ENSPANG00000026345EHD29864.916Papio_anubis
ENSXCOG00000012882-9969.231ENSPKIG00000016765ehd2a9968.889Paramormyrops_kingsleyae
ENSXCOG00000012882-9969.981ENSPKIG00000013262EHD29970.205Paramormyrops_kingsleyae
ENSXCOG00000012882-9969.963ENSPMGG00000015379ehd2b9970.412Periophthalmus_magnuspinnatus
ENSXCOG00000012882-9983.051ENSPMGG00000013285-9883.302Periophthalmus_magnuspinnatus
ENSXCOG00000012882-9864.259ENSPCIG00000016714EHD29664.218Phascolarctos_cinereus
ENSXCOG00000012882-9969.759ENSPFOG00000011756ehd2b9969.815Poecilia_formosa
ENSXCOG00000012882-9997.579ENSPFOG00000012774-9897.948Poecilia_formosa
ENSXCOG00000012882-9969.944ENSPLAG00000020534ehd2b9970.000Poecilia_latipinna
ENSXCOG00000012882-9997.952ENSPLAG00000000301-9997.952Poecilia_latipinna
ENSXCOG00000012882-9997.579ENSPMEG00000024037-9997.579Poecilia_mexicana
ENSXCOG00000012882-9969.759ENSPMEG00000008030ehd2b9969.815Poecilia_mexicana
ENSXCOG00000012882-9969.759ENSPREG00000016332ehd2b9969.815Poecilia_reticulata
ENSXCOG00000012882-9997.393ENSPREG00000017608ehd2a9997.393Poecilia_reticulata
ENSXCOG00000012882-9865.209ENSPPYG00000010180EHD28864.916Pongo_abelii
ENSXCOG00000012882-5472.125ENSPCAG00000007707EHD29770.667Procavia_capensis
ENSXCOG00000012882-9865.019ENSPCOG00000010027EHD29864.728Propithecus_coquereli
ENSXCOG00000012882-9863.118ENSPVAG00000014670EHD29862.852Pteropus_vampyrus
ENSXCOG00000012882-9969.388ENSPNYG00000007864ehd2b9969.573Pundamilia_nyererei
ENSXCOG00000012882-9986.817ENSPNYG00000009593-9887.079Pundamilia_nyererei
ENSXCOG00000012882-9967.669ENSPNAG00000016978ehd2a9767.598Pygocentrus_nattereri
ENSXCOG00000012882-9969.202ENSPNAG00000026764ehd2b9969.048Pygocentrus_nattereri
ENSXCOG00000012882-9969.981ENSPNAG00000026560ehd2b9969.815Pygocentrus_nattereri
ENSXCOG00000012882-9865.589ENSRNOG00000011346Ehd29765.970Rattus_norvegicus
ENSXCOG00000012882-9865.209ENSRBIG00000035965EHD29864.916Rhinopithecus_bieti
ENSXCOG00000012882-9865.209ENSRROG00000043148EHD29864.916Rhinopithecus_roxellana
ENSXCOG00000012882-9865.019ENSSBOG00000025594EHD29864.728Saimiri_boliviensis_boliviensis
ENSXCOG00000012882-9969.030ENSSFOG00015023056ehd29969.088Scleropages_formosus
ENSXCOG00000012882-8967.008ENSSFOG00015006753ehd2a9673.521Scleropages_formosus
ENSXCOG00000012882-9969.944ENSSMAG00000020558ehd2b9970.000Scophthalmus_maximus
ENSXCOG00000012882-9988.202ENSSMAG00000020341-9888.368Scophthalmus_maximus
ENSXCOG00000012882-9969.573ENSSDUG00000000141ehd2b9969.815Seriola_dumerili
ENSXCOG00000012882-9990.548ENSSDUG00000020042-9890.548Seriola_dumerili
ENSXCOG00000012882-9990.075ENSSLDG00000008515-9890.449Seriola_lalandi_dorsalis
ENSXCOG00000012882-9969.573ENSSLDG00000005368ehd2b9969.815Seriola_lalandi_dorsalis
ENSXCOG00000012882-9966.294ENSSPUG00000004401EHD29965.858Sphenodon_punctatus
ENSXCOG00000012882-9969.759ENSSPAG00000018164ehd2b9970.000Stegastes_partitus
ENSXCOG00000012882-9989.533ENSSPAG00000006737-9890.075Stegastes_partitus
ENSXCOG00000012882-9865.779ENSSSCG00000023371EHD29865.478Sus_scrofa
ENSXCOG00000012882-9869.508ENSTRUG00000010128ehd2b9869.418Takifugu_rubripes
ENSXCOG00000012882-9869.508ENSTNIG00000016284ehd2b9967.963Tetraodon_nigroviridis
ENSXCOG00000012882-9865.209ENSTTRG00000011850EHD29864.916Tursiops_truncatus
ENSXCOG00000012882-9865.779ENSUAMG00000028253EHD29865.478Ursus_americanus
ENSXCOG00000012882-9865.589ENSVVUG00000023369EHD28863.736Vulpes_vulpes
ENSXCOG00000012882-9965.607ENSXETG00000002783ehd29965.306Xenopus_tropicalis
ENSXCOG00000012882-9969.944ENSXMAG00000029134ehd2b9970.000Xiphophorus_maculatus
ENSXCOG00000012882-9999.069ENSXMAG00000010771ehd2a9999.069Xiphophorus_maculatus

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