EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSXCOG00000012938 (Gene tree)
Gene ID: -
Gene Symbol: lsm8
Alias: -
Full Name: LSM8 homolog%2C U6 small nuclear RNA associated
Gene Type: protein_coding
Species: Xiphophorus_couchianus
Status: putative
Strand: Plus strand
Length: 2234 bases
Position: chrKQ557209.1:2773312-2775545
Accession: ZDB-GENE-070629-3
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSXCOP00000017163	LSM	PF01423.22	1.1e-14	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSXCOT00000017383	-	285	-	ENSXCOP00000017163	94 (aa)	-	-

Gene Model

Click here to download ENSXCOG00000012938's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSXCOG00000012938's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSXCOG00000012938	lsm8	65	38.710	ENSXCOG00000017217	snrpb	78	38.710

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSXCOG00000012938	lsm8	100	89.583	ENSG00000128534	LSM8	100	94.667	Homo_sapiens
ENSXCOG00000012938	lsm8	100	96.875	ENSAPOG00000008649	lsm8	100	96.875	Acanthochromis_polyacanthus
ENSXCOG00000012938	lsm8	100	89.583	ENSAMEG00000001162	LSM8	100	89.583	Ailuropoda_melanoleuca
ENSXCOG00000012938	lsm8	79	97.333	ENSACIG00000014694	lsm8	100	97.333	Amphilophus_citrinellus
ENSXCOG00000012938	lsm8	100	96.875	ENSAOCG00000013926	lsm8	100	96.875	Amphiprion_ocellaris
ENSXCOG00000012938	lsm8	100	96.875	ENSAPEG00000023502	lsm8	100	96.875	Amphiprion_percula
ENSXCOG00000012938	lsm8	79	97.333	ENSATEG00000023432	lsm8	100	97.333	Anabas_testudineus
ENSXCOG00000012938	lsm8	100	83.838	ENSAPLG00000005115	LSM8	100	83.838	Anas_platyrhynchos
ENSXCOG00000012938	lsm8	100	89.583	ENSANAG00000027771	LSM8	100	91.892	Aotus_nancymaae
ENSXCOG00000012938	lsm8	100	96.875	ENSACLG00000011253	lsm8	100	96.875	Astatotilapia_calliptera
ENSXCOG00000012938	lsm8	100	94.792	ENSAMXG00000042902	lsm8	100	94.792	Astyanax_mexicanus
ENSXCOG00000012938	lsm8	100	89.583	ENSBTAG00000012649	LSM8	100	89.583	Bos_taurus
ENSXCOG00000012938	lsm8	98	55.319	WBGene00003082	lsm-8	96	55.319	Caenorhabditis_elegans
ENSXCOG00000012938	lsm8	100	89.583	ENSCJAG00000046406	LSM8	100	91.892	Callithrix_jacchus
ENSXCOG00000012938	lsm8	98	90.426	ENSCAFG00000016459	LSM8	95	90.426	Canis_familiaris
ENSXCOG00000012938	lsm8	100	89.583	ENSCAFG00020007643	-	100	89.583	Canis_lupus_dingo
ENSXCOG00000012938	lsm8	88	88.235	ENSCAFG00020012800	-	66	88.235	Canis_lupus_dingo
ENSXCOG00000012938	lsm8	89	92.941	ENSCHIG00000014201	LSM8	90	92.941	Capra_hircus
ENSXCOG00000012938	lsm8	100	89.583	ENSTSYG00000032434	LSM8	100	89.583	Carlito_syrichta
ENSXCOG00000012938	lsm8	78	93.243	ENSCAPG00000008253	LSM8	100	93.243	Cavia_aperea
ENSXCOG00000012938	lsm8	100	89.583	ENSCPOG00000035673	LSM8	100	89.583	Cavia_porcellus
ENSXCOG00000012938	lsm8	100	89.583	ENSCCAG00000021329	LSM8	100	91.892	Cebus_capucinus
ENSXCOG00000012938	lsm8	100	89.583	ENSCATG00000045302	LSM8	100	91.892	Cercocebus_atys
ENSXCOG00000012938	lsm8	100	89.583	ENSCLAG00000003726	LSM8	100	89.583	Chinchilla_lanigera
ENSXCOG00000012938	lsm8	100	87.500	ENSCSAG00000019007	-	100	87.500	Chlorocebus_sabaeus
ENSXCOG00000012938	lsm8	100	89.583	ENSCSAG00000010802	-	100	89.583	Chlorocebus_sabaeus
ENSXCOG00000012938	lsm8	100	84.211	ENSCPBG00000008154	LSM8	97	84.211	Chrysemys_picta_bellii
ENSXCOG00000012938	lsm8	100	71.875	ENSCING00000024877	-	100	71.875	Ciona_intestinalis
ENSXCOG00000012938	lsm8	100	89.583	ENSCANG00000040728	LSM8	100	91.892	Colobus_angolensis_palliatus
ENSXCOG00000012938	lsm8	100	89.583	ENSCGRG00001000450	Lsm8	100	89.583	Cricetulus_griseus_chok1gshd
ENSXCOG00000012938	lsm8	89	92.941	ENSCGRG00000005587	Lsm8	100	92.941	Cricetulus_griseus_crigri
ENSXCOG00000012938	lsm8	100	83.158	ENSCSEG00000004164	lsm8	100	83.158	Cynoglossus_semilaevis
ENSXCOG00000012938	lsm8	100	97.917	ENSCVAG00000020547	lsm8	100	97.917	Cyprinodon_variegatus
ENSXCOG00000012938	lsm8	100	93.750	ENSDARG00000091656	lsm8	100	93.750	Danio_rerio
ENSXCOG00000012938	lsm8	100	89.583	ENSDNOG00000034613	LSM8	100	89.583	Dasypus_novemcinctus
ENSXCOG00000012938	lsm8	100	89.583	ENSDORG00000027868	Lsm8	100	89.583	Dipodomys_ordii
ENSXCOG00000012938	lsm8	98	71.277	FBgn0035271	CG2021	99	71.277	Drosophila_melanogaster
ENSXCOG00000012938	lsm8	100	90.625	ENSETEG00000011594	LSM8	100	90.625	Echinops_telfairi
ENSXCOG00000012938	lsm8	78	90.541	ENSEBUG00000012017	lsm8	100	90.541	Eptatretus_burgeri
ENSXCOG00000012938	lsm8	100	89.583	ENSEASG00005008932	LSM8	62	89.583	Equus_asinus_asinus
ENSXCOG00000012938	lsm8	89	92.941	ENSECAG00000024025	LSM8	77	92.941	Equus_caballus
ENSXCOG00000012938	lsm8	100	92.708	ENSELUG00000010138	lsm8	100	92.708	Esox_lucius
ENSXCOG00000012938	lsm8	100	89.583	ENSFCAG00000036620	-	100	89.583	Felis_catus
ENSXCOG00000012938	lsm8	84	70.370	ENSFCAG00000044794	-	82	70.370	Felis_catus
ENSXCOG00000012938	lsm8	100	90.625	ENSFALG00000010023	LSM8	100	90.625	Ficedula_albicollis
ENSXCOG00000012938	lsm8	100	89.583	ENSFDAG00000019530	LSM8	100	89.583	Fukomys_damarensis
ENSXCOG00000012938	lsm8	100	96.875	ENSFHEG00000013729	lsm8	100	96.875	Fundulus_heteroclitus
ENSXCOG00000012938	lsm8	100	90.625	ENSGALG00000009110	LSM8	100	90.625	Gallus_gallus
ENSXCOG00000012938	lsm8	100	97.917	ENSGAFG00000001135	lsm8	100	97.917	Gambusia_affinis
ENSXCOG00000012938	lsm8	100	89.583	ENSGAGG00000017366	LSM8	100	89.583	Gopherus_agassizii
ENSXCOG00000012938	lsm8	100	89.583	ENSGGOG00000041883	LSM8	100	89.583	Gorilla_gorilla
ENSXCOG00000012938	lsm8	100	96.875	ENSHBUG00000003646	lsm8	100	96.875	Haplochromis_burtoni
ENSXCOG00000012938	lsm8	100	84.375	ENSHGLG00000019782	-	100	84.375	Heterocephalus_glaber_female
ENSXCOG00000012938	lsm8	69	89.394	ENSHGLG00000001988	-	96	89.394	Heterocephalus_glaber_female
ENSXCOG00000012938	lsm8	98	88.298	ENSHGLG00100003934	-	94	88.298	Heterocephalus_glaber_male
ENSXCOG00000012938	lsm8	100	85.417	ENSHGLG00100012166	-	100	85.417	Heterocephalus_glaber_male
ENSXCOG00000012938	lsm8	100	96.875	ENSHCOG00000005037	lsm8	100	96.875	Hippocampus_comes
ENSXCOG00000012938	lsm8	100	94.792	ENSIPUG00000019811	NAA38	100	94.792	Ictalurus_punctatus
ENSXCOG00000012938	lsm8	90	80.233	ENSSTOG00000034801	-	80	80.233	Ictidomys_tridecemlineatus
ENSXCOG00000012938	lsm8	100	89.583	ENSSTOG00000009039	LSM8	100	89.583	Ictidomys_tridecemlineatus
ENSXCOG00000012938	lsm8	100	89.583	ENSJJAG00000009031	Lsm8	99	89.583	Jaculus_jaculus
ENSXCOG00000012938	lsm8	100	96.875	ENSKMAG00000018983	lsm8	100	96.875	Kryptolebias_marmoratus
ENSXCOG00000012938	lsm8	100	92.708	ENSLACG00000010231	LSM8	100	92.708	Latimeria_chalumnae
ENSXCOG00000012938	lsm8	100	95.833	ENSLOCG00000015580	lsm8	100	95.833	Lepisosteus_oculatus
ENSXCOG00000012938	lsm8	100	88.660	ENSLAFG00000011242	LSM8	100	88.660	Loxodonta_africana
ENSXCOG00000012938	lsm8	100	86.458	ENSMFAG00000013044	-	100	86.458	Macaca_fascicularis
ENSXCOG00000012938	lsm8	100	89.583	ENSMFAG00000035798	LSM8	100	91.892	Macaca_fascicularis
ENSXCOG00000012938	lsm8	100	89.583	ENSMMUG00000046401	LSM8	100	91.892	Macaca_mulatta
ENSXCOG00000012938	lsm8	79	92.000	ENSMNEG00000011141	-	100	92.000	Macaca_nemestrina
ENSXCOG00000012938	lsm8	100	89.583	ENSMNEG00000036764	-	100	91.892	Macaca_nemestrina
ENSXCOG00000012938	lsm8	100	89.583	ENSMLEG00000035828	-	100	91.892	Mandrillus_leucophaeus
ENSXCOG00000012938	lsm8	100	76.042	ENSMLEG00000039324	-	100	76.042	Mandrillus_leucophaeus
ENSXCOG00000012938	lsm8	79	97.333	ENSMAMG00000018839	lsm8	100	97.333	Mastacembelus_armatus
ENSXCOG00000012938	lsm8	100	96.875	ENSMZEG00005019138	lsm8	100	96.875	Maylandia_zebra
ENSXCOG00000012938	lsm8	100	90.625	ENSMGAG00000008808	LSM8	100	90.625	Meleagris_gallopavo
ENSXCOG00000012938	lsm8	100	72.917	ENSMAUG00000015356	-	100	72.917	Mesocricetus_auratus
ENSXCOG00000012938	lsm8	76	87.500	ENSMAUG00000020287	-	100	85.135	Mesocricetus_auratus
ENSXCOG00000012938	lsm8	100	83.333	ENSMAUG00000015721	-	100	83.333	Mesocricetus_auratus
ENSXCOG00000012938	lsm8	100	89.583	ENSMICG00000042730	LSM8	100	89.583	Microcebus_murinus
ENSXCOG00000012938	lsm8	100	89.583	ENSMOCG00000001688	Lsm8	100	89.583	Microtus_ochrogaster
ENSXCOG00000012938	lsm8	79	97.333	ENSMMOG00000006046	lsm8	100	97.333	Mola_mola
ENSXCOG00000012938	lsm8	77	82.667	ENSMODG00000015729	LSM8	96	82.667	Monodelphis_domestica
ENSXCOG00000012938	lsm8	100	95.833	ENSMALG00000000405	lsm8	100	95.833	Monopterus_albus
ENSXCOG00000012938	lsm8	100	89.583	MGP_CAROLIEiJ_G0028125	-	100	89.583	Mus_caroli
ENSXCOG00000012938	lsm8	100	89.583	ENSMUSG00000044155	Lsm8	100	89.583	Mus_musculus
ENSXCOG00000012938	lsm8	100	89.583	MGP_PahariEiJ_G0021881	Lsm8	100	94.667	Mus_pahari
ENSXCOG00000012938	lsm8	100	89.583	MGP_SPRETEiJ_G0029125	-	100	89.583	Mus_spretus
ENSXCOG00000012938	lsm8	100	88.542	ENSMLUG00000027762	-	100	88.542	Myotis_lucifugus
ENSXCOG00000012938	lsm8	100	89.583	ENSMLUG00000006837	-	100	89.583	Myotis_lucifugus
ENSXCOG00000012938	lsm8	100	89.583	ENSNGAG00000016554	Lsm8	100	89.583	Nannospalax_galili
ENSXCOG00000012938	lsm8	100	96.875	ENSNBRG00000014441	lsm8	100	96.875	Neolamprologus_brichardi
ENSXCOG00000012938	lsm8	100	89.583	ENSNLEG00000011768	LSM8	100	89.583	Nomascus_leucogenys
ENSXCOG00000012938	lsm8	100	78.125	ENSMEUG00000007801	LSM8	100	78.125	Notamacropus_eugenii
ENSXCOG00000012938	lsm8	89	92.941	ENSOPRG00000014809	LSM8	100	92.941	Ochotona_princeps
ENSXCOG00000012938	lsm8	89	75.581	ENSODEG00000020290	-	100	75.581	Octodon_degus
ENSXCOG00000012938	lsm8	100	89.583	ENSODEG00000000418	-	100	89.583	Octodon_degus
ENSXCOG00000012938	lsm8	100	88.542	ENSOANG00000014536	LSM8	100	88.542	Ornithorhynchus_anatinus
ENSXCOG00000012938	lsm8	100	88.660	ENSOCUG00000017359	LSM8	100	88.660	Oryctolagus_cuniculus
ENSXCOG00000012938	lsm8	100	85.417	ENSORLG00000017432	lsm8	100	85.417	Oryzias_latipes
ENSXCOG00000012938	lsm8	100	85.417	ENSORLG00020004376	lsm8	100	85.417	Oryzias_latipes_hni
ENSXCOG00000012938	lsm8	100	96.875	ENSORLG00015003757	lsm8	100	96.875	Oryzias_latipes_hsok
ENSXCOG00000012938	lsm8	100	84.211	ENSOMEG00000022509	lsm8	100	84.211	Oryzias_melastigma
ENSXCOG00000012938	lsm8	100	89.583	ENSOGAG00000013377	LSM8	100	89.583	Otolemur_garnettii
ENSXCOG00000012938	lsm8	100	89.583	ENSOARG00000017974	LSM8	100	89.583	Ovis_aries
ENSXCOG00000012938	lsm8	79	94.667	ENSPPAG00000043228	-	100	94.667	Pan_paniscus
ENSXCOG00000012938	lsm8	100	89.583	ENSPPRG00000006444	LSM8	100	89.583	Panthera_pardus
ENSXCOG00000012938	lsm8	100	89.583	ENSPTIG00000004722	LSM8	100	89.583	Panthera_tigris_altaica
ENSXCOG00000012938	lsm8	79	94.667	ENSPTRG00000046596	-	100	94.667	Pan_troglodytes
ENSXCOG00000012938	lsm8	100	89.583	ENSPANG00000035470	-	100	91.892	Papio_anubis
ENSXCOG00000012938	lsm8	100	84.375	ENSPANG00000019395	-	100	84.375	Papio_anubis
ENSXCOG00000012938	lsm8	89	95.294	ENSPKIG00000006092	lsm8	86	95.294	Paramormyrops_kingsleyae
ENSXCOG00000012938	lsm8	79	94.667	ENSPSIG00000017054	LSM8	100	94.667	Pelodiscus_sinensis
ENSXCOG00000012938	lsm8	79	97.333	ENSPMGG00000016442	lsm8	100	97.333	Periophthalmus_magnuspinnatus
ENSXCOG00000012938	lsm8	78	91.892	ENSPEMG00000009153	Lsm8	100	91.892	Peromyscus_maniculatus_bairdii
ENSXCOG00000012938	lsm8	97	90.323	ENSPCIG00000021467	LSM8	98	90.323	Phascolarctos_cinereus
ENSXCOG00000012938	lsm8	100	97.917	ENSPFOG00000012340	lsm8	100	97.917	Poecilia_formosa
ENSXCOG00000012938	lsm8	89	98.824	ENSPLAG00000000516	lsm8	89	98.824	Poecilia_latipinna
ENSXCOG00000012938	lsm8	100	97.917	ENSPMEG00000022567	lsm8	100	97.917	Poecilia_mexicana
ENSXCOG00000012938	lsm8	77	88.750	ENSPREG00000005527	lsm8	72	88.750	Poecilia_reticulata
ENSXCOG00000012938	lsm8	100	89.583	ENSPPYG00000017942	LSM8	100	89.583	Pongo_abelii
ENSXCOG00000012938	lsm8	97	72.826	ENSPCOG00000017982	-	97	72.826	Propithecus_coquereli
ENSXCOG00000012938	lsm8	100	89.583	ENSPCOG00000003309	-	100	89.583	Propithecus_coquereli
ENSXCOG00000012938	lsm8	89	91.765	ENSPVAG00000000990	LSM8	100	91.765	Pteropus_vampyrus
ENSXCOG00000012938	lsm8	100	96.875	ENSPNYG00000011448	lsm8	100	96.875	Pundamilia_nyererei
ENSXCOG00000012938	lsm8	100	94.792	ENSPNAG00000010252	lsm8	100	94.792	Pygocentrus_nattereri
ENSXCOG00000012938	lsm8	100	89.583	ENSRNOG00000058677	Lsm8	100	89.583	Rattus_norvegicus
ENSXCOG00000012938	lsm8	100	89.583	ENSRBIG00000032851	LSM8	100	91.892	Rhinopithecus_bieti
ENSXCOG00000012938	lsm8	100	89.583	ENSRROG00000039618	LSM8	100	91.892	Rhinopithecus_roxellana
ENSXCOG00000012938	lsm8	100	89.583	ENSSBOG00000023223	LSM8	100	91.892	Saimiri_boliviensis_boliviensis
ENSXCOG00000012938	lsm8	100	89.583	ENSSHAG00000018435	-	100	89.583	Sarcophilus_harrisii
ENSXCOG00000012938	lsm8	100	95.833	ENSSFOG00015004412	lsm8	100	95.833	Scleropages_formosus
ENSXCOG00000012938	lsm8	79	94.667	ENSSMAG00000009458	lsm8	100	94.667	Scophthalmus_maximus
ENSXCOG00000012938	lsm8	100	96.875	ENSSDUG00000014702	lsm8	100	96.875	Seriola_dumerili
ENSXCOG00000012938	lsm8	79	97.333	ENSSLDG00000016870	lsm8	100	97.333	Seriola_lalandi_dorsalis
ENSXCOG00000012938	lsm8	76	94.444	ENSSARG00000009628	-	100	94.444	Sorex_araneus
ENSXCOG00000012938	lsm8	100	89.583	ENSSPUG00000017419	LSM8	100	89.583	Sphenodon_punctatus
ENSXCOG00000012938	lsm8	100	96.875	ENSSPAG00000021422	lsm8	100	96.875	Stegastes_partitus
ENSXCOG00000012938	lsm8	100	89.583	ENSSSCG00000021652	LSM8	100	89.583	Sus_scrofa
ENSXCOG00000012938	lsm8	100	89.583	ENSTGUG00000016823	-	100	89.583	Taeniopygia_guttata
ENSXCOG00000012938	lsm8	100	90.625	ENSTGUG00000004730	-	100	90.625	Taeniopygia_guttata
ENSXCOG00000012938	lsm8	100	96.875	ENSTRUG00000025192	lsm8	100	96.875	Takifugu_rubripes
ENSXCOG00000012938	lsm8	100	96.875	ENSTNIG00000002864	lsm8	100	96.875	Tetraodon_nigroviridis
ENSXCOG00000012938	lsm8	100	89.583	ENSTTRG00000001023	LSM8	100	89.583	Tursiops_truncatus
ENSXCOG00000012938	lsm8	89	92.941	ENSUAMG00000006943	-	89	92.941	Ursus_americanus
ENSXCOG00000012938	lsm8	89	92.941	ENSUMAG00000003073	LSM8	90	92.941	Ursus_maritimus
ENSXCOG00000012938	lsm8	100	89.583	ENSVPAG00000001530	LSM8	100	89.583	Vicugna_pacos
ENSXCOG00000012938	lsm8	79	92.000	ENSVVUG00000013248	-	82	92.000	Vulpes_vulpes
ENSXCOG00000012938	lsm8	96	87.912	ENSXETG00000021829	lsm8	94	87.912	Xenopus_tropicalis
ENSXCOG00000012938	lsm8	100	97.917	ENSXMAG00000025919	lsm8	100	97.917	Xiphophorus_maculatus