EuRBPDB

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  • Description
  • RBDs
  • Transcripts
  • Gene Model
  • PPI
  • Paralogs
  • Orthologs
Description
Ensembl ID
ENSXCOG00000013190 (Gene tree)
Gene ID
-
Gene Symbol
pabpc4
Alias
cb12|sb:cb12
Full Name
poly(A) binding protein%2C cytoplasmic 4 (inducible form)
Gene Type
protein_coding
Species
Xiphophorus_couchianus
Status
putative
Strand
Plus strand
Length
17484 bases
Position
chrKQ557211.1:13531223-13548706
Accession
ZDB-GENE-030131-9663
RBP type
canonical RBP
Summary
-
RNA binding domains(RBDs)
Protein IDDomain Pfam IDE-value Domain number Total number
ENSXCOP00000017503PABPPF00658.183.4e-3111
ENSXCOP00000017501PABPPF00658.184.3e-3111
ENSXCOP00000017502PABPPF00658.184.5e-3111
ENSXCOP00000017500PABPPF00658.184.5e-3111
ENSXCOP00000017499PABPPF00658.185.4e-3111
ENSXCOP00000017503RRM_5PF13893.61.2e-0611
ENSXCOP00000017501RRM_5PF13893.61.8e-0611
ENSXCOP00000017502RRM_5PF13893.62.2e-0611
ENSXCOP00000017500RRM_5PF13893.62.4e-0611
ENSXCOP00000017503RRM_1PF00076.222.1e-6713
ENSXCOP00000017503RRM_1PF00076.222.1e-6723
ENSXCOP00000017503RRM_1PF00076.222.1e-6733
ENSXCOP00000017501RRM_1PF00076.223.5e-6713
ENSXCOP00000017501RRM_1PF00076.223.5e-6723
ENSXCOP00000017501RRM_1PF00076.223.5e-6733
ENSXCOP00000017502RRM_1PF00076.224.1e-6713
ENSXCOP00000017502RRM_1PF00076.224.1e-6723
ENSXCOP00000017502RRM_1PF00076.224.1e-6733
ENSXCOP00000017499RRM_1PF00076.227.7e-6713
ENSXCOP00000017499RRM_1PF00076.227.7e-6723
ENSXCOP00000017499RRM_1PF00076.227.7e-6733
ENSXCOP00000017500RRM_1PF00076.228.9e-6713
ENSXCOP00000017500RRM_1PF00076.228.9e-6723
ENSXCOP00000017500RRM_1PF00076.228.9e-6733
ENSXCOP00000017504RRM_1PF00076.224.6e-4512
ENSXCOP00000017504RRM_1PF00076.224.6e-4522
ENSXCOP00000017510RRM_1PF00076.227.7e-2111
Transcripts
Transcript IDNameLengthRefSeq ID Protein IDLengthRefSeq IDUniportKB ID
ENSXCOT00000017725-1554-ENSXCOP00000017503517 (aa)--
ENSXCOT00000017724-1770-ENSXCOP00000017502589 (aa)--
ENSXCOT00000017727-741-ENSXCOP00000017505246 (aa)--
ENSXCOT00000017726-663-ENSXCOP00000017504220 (aa)--
ENSXCOT00000017721-1872-ENSXCOP00000017499623 (aa)--
ENSXCOT00000017733-588-ENSXCOP00000017511195 (aa)--
ENSXCOT00000017723-1710-ENSXCOP00000017501569 (aa)--
ENSXCOT00000017722-1743-ENSXCOP00000017500580 (aa)--
ENSXCOT00000017728-564-ENSXCOP00000017506187 (aa)--
ENSXCOT00000017732-906-ENSXCOP00000017510301 (aa)--
Gene Model
Click here to download ENSXCOG00000013190's gene model file
Protein-Protein Interaction (PPI)

Clik here to download ENSXCOG00000013190's network
Paralogs
Ensembl IDGene SymbolCoverageIdentiy ParalogGene SymbolCoverageIdentiy
ENSXCOG00000013190pabpc49682.075ENSXCOG00000017066pabpc1a9875.551
ENSXCOG00000013190pabpc49732.911ENSXCOG00000002464ELAVL29532.911
ENSXCOG00000013190pabpc48337.333ENSXCOG00000007974trnau1apb5237.333
ENSXCOG00000013190pabpc47734.940ENSXCOG00000019224HNRNPA1P486234.940
ENSXCOG00000013190pabpc48339.506ENSXCOG00000019737celf3a6636.364
ENSXCOG00000013190pabpc48132.000ENSXCOG00000016995rbm195232.000
ENSXCOG00000013190pabpc48430.952ENSXCOG00000014236elavl1a9230.952
ENSXCOG00000013190pabpc49677.830ENSXCOG00000005459pabpc1l9580.000
ENSXCOG00000013190pabpc48234.409ENSXCOG00000009001-7934.444
ENSXCOG00000013190pabpc46444.444ENSXCOG00000008262cirbpa8547.170
ENSXCOG00000013190pabpc48234.177ENSXCOG00000008068-8734.177
ENSXCOG00000013190pabpc49683.491ENSXCOG00000019901pabpc1b9974.094
Orthologs
Ensembl IDGene SymbolCoverageIdentiy OrthologGene SymbolCoverageIdentiy Species
ENSXCOG00000013190pabpc49689.623ENSG00000090621PABPC49898.462Homo_sapiens
ENSXCOG00000013190pabpc49695.755ENSAPOG00000001161pabpc49997.098Acanthochromis_polyacanthus
ENSXCOG00000013190pabpc49690.094ENSAMEG00000011535-9978.073Ailuropoda_melanoleuca
ENSXCOG00000013190pabpc49652.582ENSAMEG00000015083-9447.449Ailuropoda_melanoleuca
ENSXCOG00000013190pabpc49696.698ENSACIG00000023343pabpc49997.625Amphilophus_citrinellus
ENSXCOG00000013190pabpc49695.755ENSAOCG00000021529pabpc49997.098Amphiprion_ocellaris
ENSXCOG00000013190pabpc49695.755ENSAPEG00000019196pabpc49997.098Amphiprion_percula
ENSXCOG00000013190pabpc49695.283ENSATEG00000007402pabpc49992.349Anabas_testudineus
ENSXCOG00000013190pabpc49693.396ENSAPLG00000009729-10092.208Anas_platyrhynchos
ENSXCOG00000013190pabpc49692.925ENSACAG00000002544PABPC410091.270Anolis_carolinensis
ENSXCOG00000013190pabpc49689.623ENSANAG00000025079PABPC49989.091Aotus_nancymaae
ENSXCOG00000013190pabpc49696.698ENSACLG00000019558pabpc49997.361Astatotilapia_calliptera
ENSXCOG00000013190pabpc49294.118ENSAMXG00000018779pabpc49983.245Astyanax_mexicanus
ENSXCOG00000013190pabpc45889.423ENSBTAG00000048536-8689.423Bos_taurus
ENSXCOG00000013190pabpc49690.094ENSBTAG00000017125PABPC49979.898Bos_taurus
ENSXCOG00000013190pabpc49689.076ENSCJAG00000045953-9075.833Callithrix_jacchus
ENSXCOG00000013190pabpc49689.623ENSCJAG00000002512-9989.091Callithrix_jacchus
ENSXCOG00000013190pabpc49690.094ENSCAFG00000003081PABPC49981.282Canis_familiaris
ENSXCOG00000013190pabpc49690.094ENSCAFG00020004161PABPC49978.073Canis_lupus_dingo
ENSXCOG00000013190pabpc49673.113ENSCHIG00000023385-9866.114Capra_hircus
ENSXCOG00000013190pabpc49690.094ENSCHIG00000019398-9977.907Capra_hircus
ENSXCOG00000013190pabpc49690.094ENSTSYG00000006532PABPC49989.351Carlito_syrichta
ENSXCOG00000013190pabpc49690.094ENSCAPG00000015984PABPC49989.351Cavia_aperea
ENSXCOG00000013190pabpc49690.566ENSCPOG00000009552PABPC49989.610Cavia_porcellus
ENSXCOG00000013190pabpc49689.623ENSCCAG00000037306PABPC49989.091Cebus_capucinus
ENSXCOG00000013190pabpc49690.094ENSCATG00000042164PABPC49989.351Cercocebus_atys
ENSXCOG00000013190pabpc49690.094ENSCLAG00000011899PABPC49989.351Chinchilla_lanigera
ENSXCOG00000013190pabpc49690.094ENSCSAG00000001135PABPC49978.073Chlorocebus_sabaeus
ENSXCOG00000013190pabpc49689.623ENSCHOG00000005327PABPC48088.949Choloepus_hoffmanni
ENSXCOG00000013190pabpc49693.396ENSCPBG00000001038PABPC49991.948Chrysemys_picta_bellii
ENSXCOG00000013190pabpc49690.094ENSCANG00000034177PABPC410089.351Colobus_angolensis_palliatus
ENSXCOG00000013190pabpc49690.094ENSCGRG00001018166Pabpc49989.091Cricetulus_griseus_chok1gshd
ENSXCOG00000013190pabpc49690.094ENSCGRG00000009777Pabpc410089.091Cricetulus_griseus_crigri
ENSXCOG00000013190pabpc49693.868ENSCSEG00000000130pabpc49996.042Cynoglossus_semilaevis
ENSXCOG00000013190pabpc49698.585ENSCVAG00000019246pabpc410095.423Cyprinodon_variegatus
ENSXCOG00000013190pabpc49695.755ENSDARG00000059259pabpc49996.306Danio_rerio
ENSXCOG00000013190pabpc49690.094ENSDNOG00000018444-10089.153Dasypus_novemcinctus
ENSXCOG00000013190pabpc49690.094ENSDORG00000011581Pabpc49989.351Dipodomys_ordii
ENSXCOG00000013190pabpc410063.182ENSETEG00000009172-9954.144Echinops_telfairi
ENSXCOG00000013190pabpc49689.055ENSETEG00000018453-7575.202Echinops_telfairi
ENSXCOG00000013190pabpc49682.547ENSEBUG00000000992pabpc49978.750Eptatretus_burgeri
ENSXCOG00000013190pabpc49683.491ENSEBUG00000013782pabpc49975.088Eptatretus_burgeri
ENSXCOG00000013190pabpc49690.094ENSEASG00005014119PABPC49978.073Equus_asinus_asinus
ENSXCOG00000013190pabpc49690.094ENSECAG00000009396PABPC49978.073Equus_caballus
ENSXCOG00000013190pabpc49690.566ENSEEUG00000002962PABPC48789.037Erinaceus_europaeus
ENSXCOG00000013190pabpc49692.925ENSELUG00000003195pabpc49994.723Esox_lucius
ENSXCOG00000013190pabpc49690.094ENSFCAG00000015254-9981.282Felis_catus
ENSXCOG00000013190pabpc49691.509ENSFALG00000000543PABPC49990.909Ficedula_albicollis
ENSXCOG00000013190pabpc49658.163ENSFDAG00000010581-9951.664Fukomys_damarensis
ENSXCOG00000013190pabpc49690.094ENSFDAG00000020016-9978.073Fukomys_damarensis
ENSXCOG00000013190pabpc49698.113ENSFHEG00000007548pabpc49995.431Fundulus_heteroclitus
ENSXCOG00000013190pabpc49691.038ENSGMOG00000019025pabpc49987.544Gadus_morhua
ENSXCOG00000013190pabpc49692.925ENSGALG00000003800PABPC49984.119Gallus_gallus
ENSXCOG00000013190pabpc49996.313ENSGAFG00000018195pabpc49999.168Gambusia_affinis
ENSXCOG00000013190pabpc49694.811ENSGACG00000007179pabpc49995.778Gasterosteus_aculeatus
ENSXCOG00000013190pabpc49693.396ENSGAGG00000001888PABPC49992.208Gopherus_agassizii
ENSXCOG00000013190pabpc49689.623ENSGGOG00000004002PABPC49989.091Gorilla_gorilla
ENSXCOG00000013190pabpc49696.698ENSHBUG00000020206pabpc49997.361Haplochromis_burtoni
ENSXCOG00000013190pabpc49690.094ENSHGLG00000011162PABPC49989.351Heterocephalus_glaber_female
ENSXCOG00000013190pabpc49690.094ENSHGLG00100001580PABPC49989.351Heterocephalus_glaber_male
ENSXCOG00000013190pabpc49694.340ENSHCOG00000012694pabpc49991.637Hippocampus_comes
ENSXCOG00000013190pabpc49694.811ENSIPUG00000016620pabpc49995.778Ictalurus_punctatus
ENSXCOG00000013190pabpc49690.094ENSSTOG00000010416PABPC49989.351Ictidomys_tridecemlineatus
ENSXCOG00000013190pabpc49686.792ENSJJAG00000007781Pabpc49981.039Jaculus_jaculus
ENSXCOG00000013190pabpc49696.226ENSKMAG00000013597pabpc49992.185Kryptolebias_marmoratus
ENSXCOG00000013190pabpc49692.925ENSLBEG00000013654pabpc49991.844Labrus_bergylta
ENSXCOG00000013190pabpc49692.453ENSLACG00000011907PABPC49991.948Latimeria_chalumnae
ENSXCOG00000013190pabpc49694.811ENSLOCG00000001877pabpc49995.503Lepisosteus_oculatus
ENSXCOG00000013190pabpc49690.094ENSLAFG00000000151PABPC49983.303Loxodonta_africana
ENSXCOG00000013190pabpc49690.094ENSMFAG00000041481PABPC49989.351Macaca_fascicularis
ENSXCOG00000013190pabpc49690.094ENSMMUG00000007497PABPC49978.073Macaca_mulatta
ENSXCOG00000013190pabpc49690.094ENSMNEG00000043054PABPC49989.351Macaca_nemestrina
ENSXCOG00000013190pabpc49690.094ENSMLEG00000040716PABPC49989.351Mandrillus_leucophaeus
ENSXCOG00000013190pabpc49695.283ENSMAMG00000010025pabpc49992.527Mastacembelus_armatus
ENSXCOG00000013190pabpc49696.226ENSMZEG00005006141pabpc49997.098Maylandia_zebra
ENSXCOG00000013190pabpc49692.925ENSMGAG00000005408PABPC410092.208Meleagris_gallopavo
ENSXCOG00000013190pabpc49687.209ENSMAUG00000019763-8288.384Mesocricetus_auratus
ENSXCOG00000013190pabpc48077.419ENSMAUG00000004089-9078.226Mesocricetus_auratus
ENSXCOG00000013190pabpc49684.874ENSMAUG00000001295-9780.288Mesocricetus_auratus
ENSXCOG00000013190pabpc49694.118ENSMICG00000036729-10076.154Microcebus_murinus
ENSXCOG00000013190pabpc49694.118ENSMICG00000016633-9982.887Microcebus_murinus
ENSXCOG00000013190pabpc49690.566ENSMOCG00000006763Pabpc49989.610Microtus_ochrogaster
ENSXCOG00000013190pabpc49695.283ENSMMOG00000002363pabpc49990.778Mola_mola
ENSXCOG00000013190pabpc49693.427ENSMODG00000017657-9980.634Monodelphis_domestica
ENSXCOG00000013190pabpc49869.811ENSMODG00000018051-8973.270Monodelphis_domestica
ENSXCOG00000013190pabpc49695.283ENSMALG00000011017pabpc49996.834Monopterus_albus
ENSXCOG00000013190pabpc49686.385MGP_CAROLIEiJ_G0024864-10086.550Mus_caroli
ENSXCOG00000013190pabpc49691.038MGP_CAROLIEiJ_G0026435-10096.154Mus_caroli
ENSXCOG00000013190pabpc49690.566ENSMUSG00000011257Pabpc49896.154Mus_musculus
ENSXCOG00000013190pabpc49691.038MGP_PahariEiJ_G0028765Pabpc410096.154Mus_pahari
ENSXCOG00000013190pabpc49690.547MGP_SPRETEiJ_G0027415Pabpc410096.154Mus_spretus
ENSXCOG00000013190pabpc49549.524ENSMPUG00000006836-9247.320Mustela_putorius_furo
ENSXCOG00000013190pabpc49690.094ENSMPUG00000014414-9978.073Mustela_putorius_furo
ENSXCOG00000013190pabpc49689.623ENSMLUG00000012068PABPC49983.094Myotis_lucifugus
ENSXCOG00000013190pabpc49690.094ENSNGAG00000018292Pabpc49983.303Nannospalax_galili
ENSXCOG00000013190pabpc49693.333ENSNBRG00000009708pabpc49896.732Neolamprologus_brichardi
ENSXCOG00000013190pabpc49699.160ENSNBRG00000010047-7298.795Neolamprologus_brichardi
ENSXCOG00000013190pabpc49690.094ENSNLEG00000011928PABPC49989.351Nomascus_leucogenys
ENSXCOG00000013190pabpc49689.151ENSOPRG00000011984PABPC48593.651Ochotona_princeps
ENSXCOG00000013190pabpc49693.277ENSODEG00000017434-10073.585Octodon_degus
ENSXCOG00000013190pabpc45879.817ENSODEG00000013457-9979.817Octodon_degus
ENSXCOG00000013190pabpc49689.623ENSODEG00000006592-9989.974Octodon_degus
ENSXCOG00000013190pabpc49696.698ENSONIG00000008176pabpc49997.625Oreochromis_niloticus
ENSXCOG00000013190pabpc49693.396ENSOANG00000010001PABPC49989.447Ornithorhynchus_anatinus
ENSXCOG00000013190pabpc49689.623ENSOCUG00000000562PABPC47295.833Oryctolagus_cuniculus
ENSXCOG00000013190pabpc49695.283ENSORLG00000017479pabpc49895.785Oryzias_latipes
ENSXCOG00000013190pabpc49695.283ENSORLG00020018644pabpc49895.785Oryzias_latipes_hni
ENSXCOG00000013190pabpc49695.283ENSORLG00015015042pabpc49895.785Oryzias_latipes_hsok
ENSXCOG00000013190pabpc49696.226ENSOMEG00000014410pabpc49997.361Oryzias_melastigma
ENSXCOG00000013190pabpc49690.094ENSOGAG00000004067PABPC49989.351Otolemur_garnettii
ENSXCOG00000013190pabpc49690.094ENSOARG00000020060PABPC49977.907Ovis_aries
ENSXCOG00000013190pabpc49689.623ENSPPAG00000043625PABPC49989.091Pan_paniscus
ENSXCOG00000013190pabpc49690.094ENSPPRG00000024727PABPC49981.282Panthera_pardus
ENSXCOG00000013190pabpc49690.094ENSPTIG00000005829PABPC49981.282Panthera_tigris_altaica
ENSXCOG00000013190pabpc49689.623ENSPTRG00000000573PABPC49989.091Pan_troglodytes
ENSXCOG00000013190pabpc49690.094ENSPANG00000009484PABPC49981.109Papio_anubis
ENSXCOG00000013190pabpc49694.340ENSPKIG00000025356pabpc49896.042Paramormyrops_kingsleyae
ENSXCOG00000013190pabpc49693.396ENSPSIG00000016892PABPC49992.208Pelodiscus_sinensis
ENSXCOG00000013190pabpc49695.755ENSPMGG00000009073pabpc49988.649Periophthalmus_magnuspinnatus
ENSXCOG00000013190pabpc49684.434ENSPEMG00000024193-9985.714Peromyscus_maniculatus_bairdii
ENSXCOG00000013190pabpc49690.094ENSPEMG00000023569-9989.091Peromyscus_maniculatus_bairdii
ENSXCOG00000013190pabpc49684.038ENSPMAG00000007885pabpc410076.000Petromyzon_marinus
ENSXCOG00000013190pabpc49683.256ENSPMAG00000002836pabpc49972.888Petromyzon_marinus
ENSXCOG00000013190pabpc49693.868ENSPCIG00000020674PABPC49994.102Phascolarctos_cinereus
ENSXCOG00000013190pabpc49698.585ENSPFOG00000002682pabpc49995.782Poecilia_formosa
ENSXCOG00000013190pabpc49698.585ENSPLAG00000010112pabpc49995.958Poecilia_latipinna
ENSXCOG00000013190pabpc49698.585ENSPMEG00000019739pabpc49995.782Poecilia_mexicana
ENSXCOG00000013190pabpc49698.585ENSPREG00000001589pabpc49996.134Poecilia_reticulata
ENSXCOG00000013190pabpc49689.623ENSPPYG00000001506PABPC49977.907Pongo_abelii
ENSXCOG00000013190pabpc49381.897ENSPCAG00000003341PABPC49972.757Procavia_capensis
ENSXCOG00000013190pabpc49690.094ENSPCOG00000023725-9989.351Propithecus_coquereli
ENSXCOG00000013190pabpc49690.756ENSPCOG00000025882-10073.810Propithecus_coquereli
ENSXCOG00000013190pabpc49690.094ENSPVAG00000002187PABPC410078.261Pteropus_vampyrus
ENSXCOG00000013190pabpc49696.698ENSPNYG00000006134pabpc49997.361Pundamilia_nyererei
ENSXCOG00000013190pabpc49695.283ENSPNAG00000024355pabpc49990.300Pygocentrus_nattereri
ENSXCOG00000013190pabpc49686.792ENSRNOG00000028592AABR07035074.19986.234Rattus_norvegicus
ENSXCOG00000013190pabpc49689.623ENSRNOG00000015642Pabpc49988.831Rattus_norvegicus
ENSXCOG00000013190pabpc49690.094ENSRBIG00000039761PABPC49989.351Rhinopithecus_bieti
ENSXCOG00000013190pabpc49690.094ENSRROG00000033355PABPC49989.351Rhinopithecus_roxellana
ENSXCOG00000013190pabpc49689.623ENSSBOG00000026193PABPC49980.903Saimiri_boliviensis_boliviensis
ENSXCOG00000013190pabpc49693.868ENSSHAG00000018139PABPC49992.987Sarcophilus_harrisii
ENSXCOG00000013190pabpc49695.283ENSSFOG00015023514pabpc49296.834Scleropages_formosus
ENSXCOG00000013190pabpc49694.340ENSSMAG00000009007pabpc49991.652Scophthalmus_maximus
ENSXCOG00000013190pabpc49695.283ENSSDUG00000012683pabpc49996.834Seriola_dumerili
ENSXCOG00000013190pabpc49695.283ENSSLDG00000013025pabpc49996.834Seriola_lalandi_dorsalis
ENSXCOG00000013190pabpc49688.208ENSSARG00000000310PABPC49577.076Sorex_araneus
ENSXCOG00000013190pabpc49692.925ENSSPUG00000003204PABPC49991.688Sphenodon_punctatus
ENSXCOG00000013190pabpc49695.283ENSSPAG00000009252pabpc49996.834Stegastes_partitus
ENSXCOG00000013190pabpc49544.704ENSSSCG00000036170-9645.063Sus_scrofa
ENSXCOG00000013190pabpc49694.118ENSSSCG00000003660-9981.109Sus_scrofa
ENSXCOG00000013190pabpc49691.509ENSTGUG00000001266PABPC49991.169Taeniopygia_guttata
ENSXCOG00000013190pabpc49694.811ENSTRUG00000005907pabpc49996.306Takifugu_rubripes
ENSXCOG00000013190pabpc49694.340ENSTNIG00000016902pabpc49995.467Tetraodon_nigroviridis
ENSXCOG00000013190pabpc49381.897ENSTBEG00000009035PABPC410068.729Tupaia_belangeri
ENSXCOG00000013190pabpc49381.897ENSTTRG00000014340PABPC410067.893Tursiops_truncatus
ENSXCOG00000013190pabpc49690.094ENSUAMG00000000303PABPC49981.282Ursus_americanus
ENSXCOG00000013190pabpc49690.094ENSUMAG00000019585PABPC410089.153Ursus_maritimus
ENSXCOG00000013190pabpc49685.714ENSVPAG00000010041PABPC45481.193Vicugna_pacos
ENSXCOG00000013190pabpc49690.094ENSVVUG00000005215PABPC49981.282Vulpes_vulpes
ENSXCOG00000013190pabpc46398.077ENSXETG00000027221-9898.077Xenopus_tropicalis
ENSXCOG00000013190pabpc49690.566ENSXETG00000010946pabpc49981.975Xenopus_tropicalis
ENSXCOG00000013190pabpc49699.057ENSXMAG00000019007pabpc49996.485Xiphophorus_maculatus

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