EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSXCOG00000013213 (Gene tree)
Gene ID: -
Gene Symbol: -
Alias: -
Full Name: -
Gene Type: protein_coding
Species: Xiphophorus_couchianus
Status: putative
Strand: Minus strand
Length: 3425 bases
Position: chrKQ557220.1:8535315-8538739
Accession: -
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSXCOP00000017526	zf-C2H2	PF00096.26	3.5e-18	1	3
ENSXCOP00000017526	zf-C2H2	PF00096.26	3.5e-18	2	3
ENSXCOP00000017526	zf-C2H2	PF00096.26	3.5e-18	3	3
ENSXCOP00000017526	zf-met	PF12874.7	0.00023	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSXCOT00000017748	-	717	-	ENSXCOP00000017526	238 (aa)	-	-

Gene Model

Click here to download ENSXCOG00000013213's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSXCOG00000013213's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSXCOG00000013213	-	50	40.000	ENSXCOG00000019377	-	92	40.000
ENSXCOG00000013213	-	81	44.545	ENSXCOG00000008116	-	97	44.545
ENSXCOG00000013213	-	50	46.364	ENSXCOG00000016307	-	83	46.364
ENSXCOG00000013213	-	50	44.545	ENSXCOG00000007945	-	72	44.545
ENSXCOG00000013213	-	58	44.545	ENSXCOG00000007994	-	88	42.727
ENSXCOG00000013213	-	54	39.623	ENSXCOG00000010259	-	58	39.623
ENSXCOG00000013213	-	50	45.000	ENSXCOG00000000528	-	78	45.000
ENSXCOG00000013213	-	52	37.963	ENSXCOG00000007499	zbtb41	56	37.963
ENSXCOG00000013213	-	52	44.545	ENSXCOG00000015441	-	87	44.545
ENSXCOG00000013213	-	55	47.761	ENSXCOG00000007139	-	71	47.761
ENSXCOG00000013213	-	59	39.604	ENSXCOG00000010567	-	94	39.604
ENSXCOG00000013213	-	50	42.202	ENSXCOG00000007981	-	84	42.202
ENSXCOG00000013213	-	53	40.909	ENSXCOG00000008567	prdm5	67	40.909
ENSXCOG00000013213	-	50	41.818	ENSXCOG00000006614	-	88	40.000
ENSXCOG00000013213	-	55	42.727	ENSXCOG00000003530	-	76	42.727
ENSXCOG00000013213	-	56	49.057	ENSXCOG00000003431	-	79	49.057
ENSXCOG00000013213	-	52	40.566	ENSXCOG00000012921	-	95	38.318
ENSXCOG00000013213	-	62	40.909	ENSXCOG00000014363	-	64	40.909
ENSXCOG00000013213	-	53	42.718	ENSXCOG00000003532	-	80	42.718
ENSXCOG00000013213	-	50	41.071	ENSXCOG00000002869	-	57	43.363
ENSXCOG00000013213	-	58	43.902	ENSXCOG00000002714	-	82	43.902
ENSXCOG00000013213	-	94	36.036	ENSXCOG00000003441	-	75	36.036
ENSXCOG00000013213	-	93	64.865	ENSXCOG00000000354	-	72	64.865
ENSXCOG00000013213	-	77	40.000	ENSXCOG00000007529	-	98	41.860
ENSXCOG00000013213	-	54	42.593	ENSXCOG00000010576	-	70	42.202
ENSXCOG00000013213	-	94	42.727	ENSXCOG00000007957	-	94	42.727
ENSXCOG00000013213	-	61	38.655	ENSXCOG00000010948	-	59	38.655
ENSXCOG00000013213	-	53	39.394	ENSXCOG00000020768	-	68	39.394
ENSXCOG00000013213	-	51	42.667	ENSXCOG00000019457	-	83	41.463
ENSXCOG00000013213	-	50	43.636	ENSXCOG00000002857	-	92	43.636
ENSXCOG00000013213	-	61	44.545	ENSXCOG00000013004	-	74	44.545
ENSXCOG00000013213	-	52	46.512	ENSXCOG00000016567	-	76	46.512
ENSXCOG00000013213	-	55	45.455	ENSXCOG00000009003	-	90	45.455
ENSXCOG00000013213	-	56	37.864	ENSXCOG00000012924	-	95	37.864
ENSXCOG00000013213	-	50	36.364	ENSXCOG00000007987	-	76	36.364
ENSXCOG00000013213	-	56	44.660	ENSXCOG00000003896	-	66	44.660
ENSXCOG00000013213	-	51	50.000	ENSXCOG00000019443	-	96	50.000
ENSXCOG00000013213	-	68	45.455	ENSXCOG00000001200	-	97	45.455
ENSXCOG00000013213	-	52	42.718	ENSXCOG00000009794	-	82	42.718
ENSXCOG00000013213	-	52	44.144	ENSXCOG00000019481	-	90	44.144
ENSXCOG00000013213	-	57	44.792	ENSXCOG00000019484	-	88	41.228
ENSXCOG00000013213	-	66	41.818	ENSXCOG00000008083	-	95	41.818
ENSXCOG00000013213	-	54	43.820	ENSXCOG00000006553	-	82	43.820
ENSXCOG00000013213	-	50	44.545	ENSXCOG00000002473	-	77	44.545
ENSXCOG00000013213	-	54	44.554	ENSXCOG00000019401	-	86	44.554
ENSXCOG00000013213	-	77	40.909	ENSXCOG00000011725	-	95	42.105
ENSXCOG00000013213	-	52	41.441	ENSXCOG00000009798	-	69	41.441
ENSXCOG00000013213	-	50	46.364	ENSXCOG00000007368	-	93	46.364
ENSXCOG00000013213	-	50	42.453	ENSXCOG00000003538	-	97	42.453
ENSXCOG00000013213	-	55	43.373	ENSXCOG00000007941	-	82	43.373
ENSXCOG00000013213	-	68	46.341	ENSXCOG00000019149	znf526	52	42.202
ENSXCOG00000013213	-	97	42.373	ENSXCOG00000001116	-	93	39.091
ENSXCOG00000013213	-	91	48.276	ENSXCOG00000012458	-	84	48.276
ENSXCOG00000013213	-	50	40.000	ENSXCOG00000003438	-	57	40.000
ENSXCOG00000013213	-	50	37.931	ENSXCOG00000003435	-	83	37.931
ENSXCOG00000013213	-	100	37.736	ENSXCOG00000014367	scrt2	95	37.736
ENSXCOG00000013213	-	55	44.545	ENSXCOG00000007937	-	81	44.545
ENSXCOG00000013213	-	54	36.735	ENSXCOG00000013870	-	69	36.735
ENSXCOG00000013213	-	50	48.182	ENSXCOG00000001226	-	85	48.182
ENSXCOG00000013213	-	75	48.101	ENSXCOG00000007406	-	99	48.101
ENSXCOG00000013213	-	51	40.000	ENSXCOG00000009772	-	84	40.000
ENSXCOG00000013213	-	51	43.689	ENSXCOG00000016860	-	97	43.299
ENSXCOG00000013213	-	79	38.554	ENSXCOG00000005697	-	69	38.554
ENSXCOG00000013213	-	89	43.636	ENSXCOG00000017328	-	89	43.636
ENSXCOG00000013213	-	61	42.222	ENSXCOG00000019492	-	93	43.478
ENSXCOG00000013213	-	50	46.575	ENSXCOG00000003451	-	86	44.660
ENSXCOG00000013213	-	51	48.148	ENSXCOG00000009597	ZNF319	85	48.148
ENSXCOG00000013213	-	100	33.929	ENSXCOG00000019861	-	95	33.929
ENSXCOG00000013213	-	51	42.727	ENSXCOG00000007414	-	95	42.727
ENSXCOG00000013213	-	57	42.857	ENSXCOG00000002898	-	79	46.988

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSXCOG00000013213	-	92	80.734	ENSATEG00000009167	gfi1ab	68	80.734	Anabas_testudineus
ENSXCOG00000013213	-	92	77.064	ENSAMXG00000006669	GFI1	54	77.064	Astyanax_mexicanus
ENSXCOG00000013213	-	80	80.734	ENSCLAG00000005915	GFI1	55	80.734	Chinchilla_lanigera
ENSXCOG00000013213	-	63	80.734	ENSCGRG00001015432	Gfi1	52	80.734	Cricetulus_griseus_chok1gshd
ENSXCOG00000013213	-	97	78.899	ENSEBUG00000008075	gfi1ab	98	78.899	Eptatretus_burgeri
ENSXCOG00000013213	-	89	80.734	ENSHGLG00000008020	GFI1	63	80.734	Heterocephalus_glaber_female
ENSXCOG00000013213	-	89	80.734	ENSHGLG00100000610	GFI1	63	80.734	Heterocephalus_glaber_male
ENSXCOG00000013213	-	56	79.817	ENSIPUG00000013414	GFI1	56	79.817	Ictalurus_punctatus
ENSXCOG00000013213	-	63	80.734	ENSSTOG00000014583	GFI1	60	80.734	Ictidomys_tridecemlineatus
ENSXCOG00000013213	-	54	80.734	ENSLACG00000013362	GFI1	74	80.734	Latimeria_chalumnae
ENSXCOG00000013213	-	63	80.734	MGP_CAROLIEiJ_G0027508	Gfi1	81	80.734	Mus_caroli
ENSXCOG00000013213	-	63	80.734	ENSMUSG00000029275	Gfi1	52	80.734	Mus_musculus
ENSXCOG00000013213	-	63	80.734	MGP_PahariEiJ_G0017280	Gfi1	81	80.734	Mus_pahari
ENSXCOG00000013213	-	63	80.734	MGP_SPRETEiJ_G0028507	Gfi1	52	80.734	Mus_spretus
ENSXCOG00000013213	-	50	75.610	ENSNBRG00000010351	-	95	75.610	Neolamprologus_brichardi
ENSXCOG00000013213	-	53	85.714	ENSNBRG00000001834	-	99	85.714	Neolamprologus_brichardi
ENSXCOG00000013213	-	51	74.380	ENSPTIG00000002680	-	90	74.380	Panthera_tigris_altaica
ENSXCOG00000013213	-	97	79.817	ENSPMGG00000011041	GFI1	98	79.817	Periophthalmus_magnuspinnatus
ENSXCOG00000013213	-	63	80.734	ENSRNOG00000002042	Gfi1	52	80.734	Rattus_norvegicus
ENSXCOG00000013213	-	99	45.652	ENSSMAG00000002798	-	98	45.652	Scophthalmus_maximus
ENSXCOG00000013213	-	100	62.783	ENSXMAG00000006527	-	100	47.896	Xiphophorus_maculatus