EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: ENSXCOG00000013343 (Gene tree)
Gene ID: -
Gene Symbol: lrpprc
Alias: fc13c04|im:7150924|im:7151572|wu:fc13c04|wu:fj38h02
Full Name: leucine-rich pentatricopeptide repeat containing
Gene Type: protein_coding
Species: Xiphophorus_couchianus
Status: putative
Strand: Minus strand
Length: 71924 bases
Position: chrKQ557215.1:20600037-20671960
Accession: ZDB-GENE-030131-7887
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSXCOP00000017702	PPR	PF01535.20	1.9e-32	1	4
ENSXCOP00000017702	PPR	PF01535.20	1.9e-32	2	4
ENSXCOP00000017702	PPR	PF01535.20	1.9e-32	3	4
ENSXCOP00000017702	PPR	PF01535.20	1.9e-32	4	4
ENSXCOP00000017707	PPR	PF01535.20	5.4e-12	1	2
ENSXCOP00000017707	PPR	PF01535.20	5.4e-12	2	2
ENSXCOP00000017708	PPR	PF01535.20	6.1e-09	1	2
ENSXCOP00000017708	PPR	PF01535.20	6.1e-09	2	2

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSXCOT00000017926	-	4155	-	ENSXCOP00000017702	1384 (aa)	-	-
ENSXCOT00000017932	-	1476	-	ENSXCOP00000017708	491 (aa)	-	-
ENSXCOT00000017931	-	3909	-	ENSXCOP00000017707	1302 (aa)	-	-

Gene Model

Click here to download ENSXCOG00000013343's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSXCOG00000013343's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSXCOG00000013343	lrpprc	95	70.450	ENSAPOG00000016610	lrpprc	98	68.559	Acanthochromis_polyacanthus
ENSXCOG00000013343	lrpprc	88	56.982	ENSAMEG00000005852	LRPPRC	100	48.084	Ailuropoda_melanoleuca
ENSXCOG00000013343	lrpprc	95	71.680	ENSACIG00000009604	lrpprc	98	67.634	Amphilophus_citrinellus
ENSXCOG00000013343	lrpprc	95	70.254	ENSAOCG00000005886	lrpprc	98	69.275	Amphiprion_ocellaris
ENSXCOG00000013343	lrpprc	96	70.816	ENSAPEG00000002937	lrpprc	97	69.508	Amphiprion_percula
ENSXCOG00000013343	lrpprc	95	71.933	ENSATEG00000010555	lrpprc	95	73.636	Anabas_testudineus
ENSXCOG00000013343	lrpprc	88	57.942	ENSACAG00000029278	LRPPRC	99	51.374	Anolis_carolinensis
ENSXCOG00000013343	lrpprc	95	54.000	ENSANAG00000027440	LRPPRC	97	52.453	Aotus_nancymaae
ENSXCOG00000013343	lrpprc	88	76.298	ENSACLG00000023712	lrpprc	91	75.914	Astatotilapia_calliptera
ENSXCOG00000013343	lrpprc	95	57.256	ENSAMXG00000004245	-	96	57.443	Astyanax_mexicanus
ENSXCOG00000013343	lrpprc	95	53.479	ENSCJAG00000000794	LRPPRC	97	52.363	Callithrix_jacchus
ENSXCOG00000013343	lrpprc	95	52.485	ENSCHIG00000020173	LRPPRC	97	48.954	Capra_hircus
ENSXCOG00000013343	lrpprc	95	40.555	ENSCAPG00000013631	LRPPRC	98	41.501	Cavia_aperea
ENSXCOG00000013343	lrpprc	85	45.220	ENSCPOG00000000204	LRPPRC	99	46.455	Cavia_porcellus
ENSXCOG00000013343	lrpprc	95	54.200	ENSCCAG00000031900	LRPPRC	93	54.200	Cebus_capucinus
ENSXCOG00000013343	lrpprc	92	55.342	ENSCATG00000014187	LRPPRC	97	52.612	Cercocebus_atys
ENSXCOG00000013343	lrpprc	95	51.779	ENSCLAG00000005203	LRPPRC	99	45.712	Chinchilla_lanigera
ENSXCOG00000013343	lrpprc	92	55.556	ENSCSAG00000013233	LRPPRC	95	48.281	Chlorocebus_sabaeus
ENSXCOG00000013343	lrpprc	95	52.390	ENSCHOG00000003631	LRPPRC	77	51.970	Choloepus_hoffmanni
ENSXCOG00000013343	lrpprc	85	55.814	ENSCANG00000034961	LRPPRC	97	57.143	Colobus_angolensis_palliatus
ENSXCOG00000013343	lrpprc	95	51.800	ENSCGRG00001016261	Lrpprc	99	46.937	Cricetulus_griseus_chok1gshd
ENSXCOG00000013343	lrpprc	95	51.800	ENSCGRG00000004072	Lrpprc	99	46.937	Cricetulus_griseus_crigri
ENSXCOG00000013343	lrpprc	95	57.843	ENSCSEG00000003850	lrpprc	97	57.026	Cynoglossus_semilaevis
ENSXCOG00000013343	lrpprc	95	78.669	ENSCVAG00000012967	lrpprc	99	75.960	Cyprinodon_variegatus
ENSXCOG00000013343	lrpprc	99	53.274	ENSDARG00000043970	lrpprc	99	53.274	Danio_rerio
ENSXCOG00000013343	lrpprc	95	52.191	ENSDNOG00000012594	-	99	46.886	Dasypus_novemcinctus
ENSXCOG00000013343	lrpprc	95	46.281	ENSDNOG00000032336	-	95	40.018	Dasypus_novemcinctus
ENSXCOG00000013343	lrpprc	88	55.631	ENSDORG00000012233	Lrpprc	95	47.988	Dipodomys_ordii
ENSXCOG00000013343	lrpprc	95	51.904	ENSETEG00000006657	LRPPRC	99	47.903	Echinops_telfairi
ENSXCOG00000013343	lrpprc	85	50.926	ENSEBUG00000015884	-	56	53.241	Eptatretus_burgeri
ENSXCOG00000013343	lrpprc	86	48.984	ENSEEUG00000012340	LRPPRC	78	52.593	Erinaceus_europaeus
ENSXCOG00000013343	lrpprc	96	55.768	ENSELUG00000012803	lrpprc	97	57.654	Esox_lucius
ENSXCOG00000013343	lrpprc	95	54.108	ENSFCAG00000013468	LRPPRC	99	47.558	Felis_catus
ENSXCOG00000013343	lrpprc	86	55.093	ENSFALG00000012738	LRPPRC	97	46.491	Ficedula_albicollis
ENSXCOG00000013343	lrpprc	95	50.000	ENSFDAG00000015328	LRPPRC	99	44.616	Fukomys_damarensis
ENSXCOG00000013343	lrpprc	95	76.321	ENSFHEG00000019604	lrpprc	99	72.578	Fundulus_heteroclitus
ENSXCOG00000013343	lrpprc	95	66.529	ENSGMOG00000008337	lrpprc	98	58.798	Gadus_morhua
ENSXCOG00000013343	lrpprc	95	84.736	ENSGAFG00000001455	lrpprc	99	79.529	Gambusia_affinis
ENSXCOG00000013343	lrpprc	100	69.923	ENSGACG00000010679	lrpprc	98	65.991	Gasterosteus_aculeatus
ENSXCOG00000013343	lrpprc	81	57.702	ENSGGOG00000041704	-	99	57.702	Gorilla_gorilla
ENSXCOG00000013343	lrpprc	97	70.441	ENSHBUG00000000393	lrpprc	96	69.559	Haplochromis_burtoni
ENSXCOG00000013343	lrpprc	95	50.491	ENSHGLG00000006123	LRPPRC	99	45.538	Heterocephalus_glaber_female
ENSXCOG00000013343	lrpprc	57	44.431	ENSHGLG00100005960	-	96	44.431	Heterocephalus_glaber_male
ENSXCOG00000013343	lrpprc	97	65.709	ENSHCOG00000002107	lrpprc	100	63.682	Hippocampus_comes
ENSXCOG00000013343	lrpprc	95	59.180	ENSIPUG00000009406	lrpprc	98	57.546	Ictalurus_punctatus
ENSXCOG00000013343	lrpprc	95	53.000	ENSSTOG00000011185	LRPPRC	99	46.507	Ictidomys_tridecemlineatus
ENSXCOG00000013343	lrpprc	95	50.405	ENSJJAG00000020475	Lrpprc	99	46.220	Jaculus_jaculus
ENSXCOG00000013343	lrpprc	90	70.133	ENSKMAG00000003287	lrpprc	84	60.014	Kryptolebias_marmoratus
ENSXCOG00000013343	lrpprc	96	68.889	ENSLBEG00000023225	lrpprc	97	68.889	Labrus_bergylta
ENSXCOG00000013343	lrpprc	95	55.447	ENSLACG00000014030	LRPPRC	99	53.099	Latimeria_chalumnae
ENSXCOG00000013343	lrpprc	94	61.887	ENSLOCG00000016390	lrpprc	92	61.887	Lepisosteus_oculatus
ENSXCOG00000013343	lrpprc	95	51.889	ENSLAFG00000008614	LRPPRC	99	46.917	Loxodonta_africana
ENSXCOG00000013343	lrpprc	92	55.128	ENSMFAG00000041560	LRPPRC	97	54.362	Macaca_fascicularis
ENSXCOG00000013343	lrpprc	91	55.628	ENSMMUG00000019841	LRPPRC	97	54.362	Macaca_mulatta
ENSXCOG00000013343	lrpprc	92	55.128	ENSMNEG00000031613	LRPPRC	98	52.134	Macaca_nemestrina
ENSXCOG00000013343	lrpprc	96	72.435	ENSMAMG00000021835	lrpprc	98	62.139	Mastacembelus_armatus
ENSXCOG00000013343	lrpprc	97	70.250	ENSMZEG00005027379	lrpprc	98	69.417	Maylandia_zebra
ENSXCOG00000013343	lrpprc	95	53.094	ENSMAUG00000012118	Lrpprc	98	48.224	Mesocricetus_auratus
ENSXCOG00000013343	lrpprc	95	52.495	ENSMICG00000010486	LRPPRC	98	51.948	Microcebus_murinus
ENSXCOG00000013343	lrpprc	95	53.000	ENSMOCG00000006048	Lrpprc	99	48.345	Microtus_ochrogaster
ENSXCOG00000013343	lrpprc	99	68.260	ENSMMOG00000007830	lrpprc	94	72.387	Mola_mola
ENSXCOG00000013343	lrpprc	88	55.902	ENSMODG00000000648	LRPPRC	98	48.074	Monodelphis_domestica
ENSXCOG00000013343	lrpprc	97	65.458	ENSMALG00000001271	lrpprc	98	63.721	Monopterus_albus
ENSXCOG00000013343	lrpprc	95	53.586	ENSMPUG00000011800	LRPPRC	100	48.686	Mustela_putorius_furo
ENSXCOG00000013343	lrpprc	95	53.000	ENSMLUG00000010575	LRPPRC	99	47.838	Myotis_lucifugus
ENSXCOG00000013343	lrpprc	95	52.305	ENSNGAG00000013069	Lrpprc	99	46.828	Nannospalax_galili
ENSXCOG00000013343	lrpprc	89	75.283	ENSNBRG00000013202	lrpprc	92	76.233	Neolamprologus_brichardi
ENSXCOG00000013343	lrpprc	95	53.493	ENSNLEG00000016782	LRPPRC	99	51.934	Nomascus_leucogenys
ENSXCOG00000013343	lrpprc	78	55.738	ENSOPRG00000016774	LRPPRC	79	55.556	Ochotona_princeps
ENSXCOG00000013343	lrpprc	95	52.705	ENSODEG00000011211	LRPPRC	99	45.500	Octodon_degus
ENSXCOG00000013343	lrpprc	95	71.680	ENSONIG00000000917	lrpprc	99	68.696	Oreochromis_niloticus
ENSXCOG00000013343	lrpprc	52	43.603	ENSOANG00000014670	-	100	43.686	Ornithorhynchus_anatinus
ENSXCOG00000013343	lrpprc	95	52.191	ENSOCUG00000015046	LRPPRC	96	47.273	Oryctolagus_cuniculus
ENSXCOG00000013343	lrpprc	97	71.811	ENSORLG00000004605	lrpprc	97	68.235	Oryzias_latipes
ENSXCOG00000013343	lrpprc	91	64.458	ENSORLG00020012536	lrpprc	99	67.891	Oryzias_latipes_hni
ENSXCOG00000013343	lrpprc	97	72.929	ENSORLG00015018270	lrpprc	97	72.929	Oryzias_latipes_hsok
ENSXCOG00000013343	lrpprc	96	72.837	ENSOMEG00000011863	-	98	74.016	Oryzias_melastigma
ENSXCOG00000013343	lrpprc	95	52.410	ENSOGAG00000012798	LRPPRC	99	47.230	Otolemur_garnettii
ENSXCOG00000013343	lrpprc	88	55.955	ENSOARG00000006522	LRPPRC	99	46.738	Ovis_aries
ENSXCOG00000013343	lrpprc	95	53.386	ENSPPAG00000040876	LRPPRC	98	51.866	Pan_paniscus
ENSXCOG00000013343	lrpprc	95	54.509	ENSPPRG00000006578	LRPPRC	99	47.792	Panthera_pardus
ENSXCOG00000013343	lrpprc	88	57.562	ENSPTIG00000000933	LRPPRC	95	48.325	Panthera_tigris_altaica
ENSXCOG00000013343	lrpprc	95	53.892	ENSPTRG00000011880	LRPPRC	98	52.444	Pan_troglodytes
ENSXCOG00000013343	lrpprc	92	55.128	ENSPANG00000020731	LRPPRC	97	52.425	Papio_anubis
ENSXCOG00000013343	lrpprc	96	55.599	ENSPKIG00000022232	lrpprc	99	55.599	Paramormyrops_kingsleyae
ENSXCOG00000013343	lrpprc	55	53.197	ENSPSIG00000006830	-	91	53.197	Pelodiscus_sinensis
ENSXCOG00000013343	lrpprc	87	67.603	ENSPMGG00000013171	-	94	72.043	Periophthalmus_magnuspinnatus
ENSXCOG00000013343	lrpprc	62	60.541	ENSPMGG00000016597	lrpprc	94	60.541	Periophthalmus_magnuspinnatus
ENSXCOG00000013343	lrpprc	84	54.481	ENSPMAG00000002147	lrpprc	99	43.954	Petromyzon_marinus
ENSXCOG00000013343	lrpprc	97	81.071	ENSPFOG00000011227	lrpprc	99	80.071	Poecilia_formosa
ENSXCOG00000013343	lrpprc	97	80.880	ENSPLAG00000004018	lrpprc	99	79.643	Poecilia_latipinna
ENSXCOG00000013343	lrpprc	97	81.071	ENSPMEG00000016425	lrpprc	99	79.786	Poecilia_mexicana
ENSXCOG00000013343	lrpprc	97	80.028	ENSPREG00000003662	lrpprc	99	80.028	Poecilia_reticulata
ENSXCOG00000013343	lrpprc	54	47.013	ENSPPYG00000029532	-	95	47.013	Pongo_abelii
ENSXCOG00000013343	lrpprc	90	54.486	ENSPCAG00000001430	LRPPRC	81	51.537	Procavia_capensis
ENSXCOG00000013343	lrpprc	92	54.915	ENSPVAG00000002007	LRPPRC	93	52.087	Pteropus_vampyrus
ENSXCOG00000013343	lrpprc	95	70.697	ENSPNYG00000000756	lrpprc	91	75.159	Pundamilia_nyererei
ENSXCOG00000013343	lrpprc	95	62.109	ENSPNAG00000002895	lrpprc	99	59.324	Pygocentrus_nattereri
ENSXCOG00000013343	lrpprc	95	52.600	ENSRNOG00000005877	Lrpprc	99	47.293	Rattus_norvegicus
ENSXCOG00000013343	lrpprc	92	54.701	ENSRBIG00000031552	LRPPRC	99	46.045	Rhinopithecus_bieti
ENSXCOG00000013343	lrpprc	92	54.915	ENSRROG00000042793	-	98	52.134	Rhinopithecus_roxellana
ENSXCOG00000013343	lrpprc	95	53.386	ENSSBOG00000011807	LRPPRC	97	51.985	Saimiri_boliviensis_boliviensis
ENSXCOG00000013343	lrpprc	87	55.056	ENSSHAG00000018725	LRPPRC	98	47.199	Sarcophilus_harrisii
ENSXCOG00000013343	lrpprc	96	54.386	ENSSFOG00015001042	lrpprc	98	51.775	Scleropages_formosus
ENSXCOG00000013343	lrpprc	96	61.647	ENSSMAG00000016811	-	98	63.137	Scophthalmus_maximus
ENSXCOG00000013343	lrpprc	95	68.102	ENSSDUG00000019062	lrpprc	98	65.387	Seriola_dumerili
ENSXCOG00000013343	lrpprc	96	61.680	ENSSLDG00000023028	lrpprc	98	57.684	Seriola_lalandi_dorsalis
ENSXCOG00000013343	lrpprc	78	56.430	ENSSARG00000000426	LRPPRC	90	56.430	Sorex_araneus
ENSXCOG00000013343	lrpprc	96	63.424	ENSSPAG00000000162	lrpprc	99	60.662	Stegastes_partitus
ENSXCOG00000013343	lrpprc	95	53.785	ENSSSCG00000008452	LRPPRC	99	46.992	Sus_scrofa
ENSXCOG00000013343	lrpprc	83	56.699	ENSTGUG00000003759	LRPPRC	99	45.627	Taeniopygia_guttata
ENSXCOG00000013343	lrpprc	100	64.684	ENSTRUG00000008409	lrpprc	96	62.891	Takifugu_rubripes
ENSXCOG00000013343	lrpprc	100	63.916	ENSTNIG00000007470	lrpprc	99	62.081	Tetraodon_nigroviridis
ENSXCOG00000013343	lrpprc	96	46.269	ENSTTRG00000006403	LRPPRC	99	46.416	Tursiops_truncatus
ENSXCOG00000013343	lrpprc	83	58.128	ENSVPAG00000008993	LRPPRC	87	58.128	Vicugna_pacos
ENSXCOG00000013343	lrpprc	95	57.606	ENSXETG00000009296	lrpprc	99	51.744	Xenopus_tropicalis
ENSXCOG00000013343	lrpprc	100	84.515	ENSXMAG00000018108	lrpprc	99	87.189	Xiphophorus_maculatus