EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: ENSXCOG00000013384 (Gene tree)
Gene ID: -
Gene Symbol: polr1a
Alias: fa26a03|sb:cb935|wu:fa26a03
Full Name: RNA polymerase I subunit A
Gene Type: protein_coding
Species: Xiphophorus_couchianus
Status: putative
Strand: Plus strand
Length: 18679 bases
Position: chrKQ557216.1:26624044-26642722
Accession: ZDB-GENE-030131-5286
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSXCOP00000017763	RNA_pol_Rpb1_2	PF00623.20	9.9e-69	1	1
ENSXCOP00000017763	RNA_pol_Rpb1_3	PF04983.18	2.3e-35	1	1
ENSXCOP00000017763	RNA_pol_Rpb1_1	PF04997.12	3e-19	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSXCOT00000017987	-	2232	-	ENSXCOP00000017763	743 (aa)	-	-

Gene Model

Click here to download ENSXCOG00000013384's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSXCOG00000013384's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSXCOG00000013384	polr1a	92	85.321	ENSAPOG00000017945	polr1a	59	85.009	Acanthochromis_polyacanthus
ENSXCOG00000013384	polr1a	92	74.542	ENSAMEG00000005807	POLR1A	80	65.096	Ailuropoda_melanoleuca
ENSXCOG00000013384	polr1a	92	75.092	ENSCAFG00020014752	POLR1A	70	74.406	Canis_lupus_dingo
ENSXCOG00000013384	polr1a	70	78.894	ENSCHOG00000003766	-	53	78.894	Choloepus_hoffmanni
ENSXCOG00000013384	polr1a	72	75.370	ENSGAGG00000004984	-	66	75.370	Gopherus_agassizii
ENSXCOG00000013384	polr1a	92	74.221	ENSHCOG00000003345	polr1a	55	69.595	Hippocampus_comes
ENSXCOG00000013384	polr1a	91	76.007	ENSLACG00000003218	polr1a	74	76.007	Latimeria_chalumnae
ENSXCOG00000013384	polr1a	92	74.176	MGP_CAROLIEiJ_G0028494	Polr1a	53	62.416	Mus_caroli
ENSXCOG00000013384	polr1a	92	74.542	ENSMUSG00000049553	Polr1a	53	61.745	Mus_musculus
ENSXCOG00000013384	polr1a	92	74.542	MGP_PahariEiJ_G0022230	Polr1a	53	63.087	Mus_pahari
ENSXCOG00000013384	polr1a	92	74.542	MGP_SPRETEiJ_G0029499	Polr1a	53	61.745	Mus_spretus
ENSXCOG00000013384	polr1a	84	62.585	ENSOANG00000012384	-	88	62.585	Ornithorhynchus_anatinus
ENSXCOG00000013384	polr1a	92	75.342	ENSPMGG00000009718	polr1a	77	75.342	Periophthalmus_magnuspinnatus
ENSXCOG00000013384	polr1a	99	76.368	ENSSPAG00000016341	polr1a	85	74.968	Stegastes_partitus
ENSXCOG00000013384	polr1a	90	83.661	ENSTRUG00000002210	polr1a	72	83.661	Takifugu_rubripes
ENSXCOG00000013384	polr1a	92	73.333	ENSUMAG00000006700	POLR1A	70	73.333	Ursus_maritimus