EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSXCOG00000013494 (Gene tree)
Gene ID: -
Gene Symbol: -
Alias: -
Full Name: -
Gene Type: protein_coding
Species: Xiphophorus_couchianus
Status: putative
Strand: Plus strand
Length: 14821 bases
Position: chrKQ557220.1:9879244-9894064
Accession: -
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSXCOP00000017914	ResIII	PF04851.15	1.3e-08	1	1
ENSXCOP00000017914	BRK	PF07533.16	4.6e-16	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSXCOT00000018138	-	4599	-	ENSXCOP00000017914	1532 (aa)	-	-

Gene Model

Click here to download ENSXCOG00000013494's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSXCOG00000013494's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSXCOG00000013494	-	88	71.621	ENSXCOG00000011073	SMARCA2	95	71.757

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSXCOG00000013494	-	97	81.898	ENSG00000127616	SMARCA4	99	95.652	Homo_sapiens
ENSXCOG00000013494	-	88	94.092	ENSAPOG00000004542	SMARCA4	99	94.092	Acanthochromis_polyacanthus
ENSXCOG00000013494	-	79	87.330	ENSAPOG00000003509	smarca4a	98	86.193	Acanthochromis_polyacanthus
ENSXCOG00000013494	-	97	86.164	ENSAMEG00000010868	SMARCA4	94	83.152	Ailuropoda_melanoleuca
ENSXCOG00000013494	-	98	83.717	ENSACIG00000021550	smarca4a	98	82.660	Amphilophus_citrinellus
ENSXCOG00000013494	-	94	94.098	ENSACIG00000003035	-	97	94.573	Amphilophus_citrinellus
ENSXCOG00000013494	-	88	87.716	ENSAOCG00000019167	smarca4a	100	87.509	Amphiprion_ocellaris
ENSXCOG00000013494	-	93	90.963	ENSAOCG00000009450	-	97	90.631	Amphiprion_ocellaris
ENSXCOG00000013494	-	99	91.779	ENSAPEG00000023108	-	99	91.972	Amphiprion_percula
ENSXCOG00000013494	-	88	87.787	ENSAPEG00000015559	smarca4a	100	87.581	Amphiprion_percula
ENSXCOG00000013494	-	98	90.383	ENSATEG00000001094	-	99	90.188	Anabas_testudineus
ENSXCOG00000013494	-	98	85.180	ENSATEG00000011524	smarca4a	99	83.375	Anabas_testudineus
ENSXCOG00000013494	-	97	86.225	ENSANAG00000036991	SMARCA4	99	79.325	Aotus_nancymaae
ENSXCOG00000013494	-	96	94.779	ENSACLG00000008638	-	99	94.779	Astatotilapia_calliptera
ENSXCOG00000013494	-	98	85.028	ENSACLG00000000163	smarca4a	98	84.533	Astatotilapia_calliptera
ENSXCOG00000013494	-	97	86.298	ENSAMXG00000021023	smarca4a	99	85.686	Astyanax_mexicanus
ENSXCOG00000013494	-	93	85.724	ENSAMXG00000011238	-	99	87.724	Astyanax_mexicanus
ENSXCOG00000013494	-	97	85.892	ENSCJAG00000005936	SMARCA4	94	87.673	Callithrix_jacchus
ENSXCOG00000013494	-	98	84.442	ENSCAFG00020024620	SMARCA4	99	83.688	Canis_lupus_dingo
ENSXCOG00000013494	-	97	90.330	ENSTSYG00000012966	SMARCA4	97	88.922	Carlito_syrichta
ENSXCOG00000013494	-	93	84.605	ENSCAPG00000015932	SMARCA4	99	83.588	Cavia_aperea
ENSXCOG00000013494	-	97	84.398	ENSCCAG00000031660	SMARCA4	98	79.588	Cebus_capucinus
ENSXCOG00000013494	-	97	86.504	ENSCATG00000029530	SMARCA4	91	91.870	Cercocebus_atys
ENSXCOG00000013494	-	98	84.810	ENSCLAG00000011946	SMARCA4	99	84.810	Chinchilla_lanigera
ENSXCOG00000013494	-	97	87.426	ENSCANG00000036013	SMARCA4	91	91.870	Colobus_angolensis_palliatus
ENSXCOG00000013494	-	95	82.012	ENSCSEG00000014771	smarca4a	99	81.366	Cynoglossus_semilaevis
ENSXCOG00000013494	-	99	90.909	ENSCVAG00000003018	-	99	90.408	Cyprinodon_variegatus
ENSXCOG00000013494	-	98	82.793	ENSCVAG00000006979	smarca4a	99	82.668	Cyprinodon_variegatus
ENSXCOG00000013494	-	91	83.860	ENSDARG00000104339	SMARCA4	94	83.704	Danio_rerio
ENSXCOG00000013494	-	97	83.920	ENSDARG00000077226	smarca4a	99	82.579	Danio_rerio
ENSXCOG00000013494	-	98	83.790	ENSDNOG00000048847	SMARCA4	90	90.217	Dasypus_novemcinctus
ENSXCOG00000013494	-	92	77.070	ENSETEG00000013361	SMARCA4	94	72.096	Echinops_telfairi
ENSXCOG00000013494	-	98	85.882	ENSEASG00005006167	SMARCA4	98	84.837	Equus_asinus_asinus
ENSXCOG00000013494	-	98	85.466	ENSELUG00000010247	smarca4a	98	84.749	Esox_lucius
ENSXCOG00000013494	-	98	83.409	ENSELUG00000023232	-	94	83.479	Esox_lucius
ENSXCOG00000013494	-	86	91.513	ENSFALG00000004208	SMARCA4	95	82.279	Ficedula_albicollis
ENSXCOG00000013494	-	99	90.841	ENSFHEG00000007902	-	89	97.887	Fundulus_heteroclitus
ENSXCOG00000013494	-	98	82.160	ENSFHEG00000010182	smarca4a	96	88.621	Fundulus_heteroclitus
ENSXCOG00000013494	-	87	82.898	ENSGMOG00000002649	smarca4a	87	83.075	Gadus_morhua
ENSXCOG00000013494	-	86	84.093	ENSGMOG00000005756	-	79	87.104	Gadus_morhua
ENSXCOG00000013494	-	99	92.190	ENSGAFG00000008827	-	99	91.619	Gambusia_affinis
ENSXCOG00000013494	-	87	87.220	ENSGAFG00000014900	smarca4a	98	83.747	Gambusia_affinis
ENSXCOG00000013494	-	98	82.134	ENSGACG00000006691	smarca4a	99	81.103	Gasterosteus_aculeatus
ENSXCOG00000013494	-	97	88.090	ENSGGOG00000009882	SMARCA4	99	82.434	Gorilla_gorilla
ENSXCOG00000013494	-	98	85.092	ENSHBUG00000021172	smarca4a	99	82.981	Haplochromis_burtoni
ENSXCOG00000013494	-	94	93.657	ENSHBUG00000005447	-	98	93.455	Haplochromis_burtoni
ENSXCOG00000013494	-	97	90.276	ENSHGLG00000010519	SMARCA4	99	82.379	Heterocephalus_glaber_female
ENSXCOG00000013494	-	84	88.755	ENSHGLG00100013774	SMARCA4	99	84.397	Heterocephalus_glaber_male
ENSXCOG00000013494	-	90	83.412	ENSHCOG00000009510	smarca4a	96	83.602	Hippocampus_comes
ENSXCOG00000013494	-	96	85.438	ENSIPUG00000016346	-	95	85.677	Ictalurus_punctatus
ENSXCOG00000013494	-	94	87.458	ENSIPUG00000006107	smarca4a	97	86.644	Ictalurus_punctatus
ENSXCOG00000013494	-	97	88.099	ENSJJAG00000012877	Smarca4	99	80.455	Jaculus_jaculus
ENSXCOG00000013494	-	98	84.777	ENSKMAG00000011931	smarca4a	98	84.234	Kryptolebias_marmoratus
ENSXCOG00000013494	-	97	92.151	ENSKMAG00000019518	-	99	90.915	Kryptolebias_marmoratus
ENSXCOG00000013494	-	90	83.174	ENSLBEG00000017383	smarca4a	97	82.457	Labrus_bergylta
ENSXCOG00000013494	-	96	88.685	ENSLBEG00000020655	-	99	87.003	Labrus_bergylta
ENSXCOG00000013494	-	50	77.053	ENSLACG00000015309	SMARCA4	100	77.415	Latimeria_chalumnae
ENSXCOG00000013494	-	98	84.028	ENSLAFG00000001433	SMARCA4	99	83.649	Loxodonta_africana
ENSXCOG00000013494	-	97	87.435	ENSMFAG00000032146	SMARCA4	91	91.870	Macaca_fascicularis
ENSXCOG00000013494	-	97	85.777	ENSMMUG00000012042	SMARCA4	97	89.822	Macaca_mulatta
ENSXCOG00000013494	-	97	86.504	ENSMNEG00000028512	SMARCA4	91	91.870	Macaca_nemestrina
ENSXCOG00000013494	-	97	86.504	ENSMLEG00000034976	SMARCA4	91	91.870	Mandrillus_leucophaeus
ENSXCOG00000013494	-	98	84.104	ENSMAMG00000009256	smarca4a	99	83.302	Mastacembelus_armatus
ENSXCOG00000013494	-	94	91.047	ENSMAMG00000002841	-	98	91.178	Mastacembelus_armatus
ENSXCOG00000013494	-	93	90.625	ENSMZEG00005023861	-	98	87.318	Maylandia_zebra
ENSXCOG00000013494	-	98	85.092	ENSMZEG00005003889	smarca4a	98	84.596	Maylandia_zebra
ENSXCOG00000013494	-	97	86.330	ENSMICG00000009806	SMARCA4	99	82.427	Microcebus_murinus
ENSXCOG00000013494	-	99	92.534	ENSMMOG00000008466	-	98	92.116	Mola_mola
ENSXCOG00000013494	-	94	83.322	ENSMMOG00000007571	smarca4a	98	82.725	Mola_mola
ENSXCOG00000013494	-	84	88.522	ENSMODG00000006287	SMARCA4	99	80.873	Monodelphis_domestica
ENSXCOG00000013494	-	94	84.031	ENSMALG00000003388	smarca4a	99	82.919	Monopterus_albus
ENSXCOG00000013494	-	88	93.700	ENSMALG00000021534	-	99	93.700	Monopterus_albus
ENSXCOG00000013494	-	73	88.567	MGP_CAROLIEiJ_G0031879	Smarca4	99	82.309	Mus_caroli
ENSXCOG00000013494	-	73	88.567	ENSMUSG00000032187	Smarca4	99	82.309	Mus_musculus
ENSXCOG00000013494	-	73	88.567	MGP_PahariEiJ_G0014745	Smarca4	100	82.871	Mus_pahari
ENSXCOG00000013494	-	73	88.567	MGP_SPRETEiJ_G0033003	Smarca4	99	82.309	Mus_spretus
ENSXCOG00000013494	-	97	90.483	ENSMLUG00000004491	-	97	89.124	Myotis_lucifugus
ENSXCOG00000013494	-	94	88.267	ENSNBRG00000011457	smarca4a	96	88.259	Neolamprologus_brichardi
ENSXCOG00000013494	-	88	93.530	ENSNBRG00000018865	-	99	93.314	Neolamprologus_brichardi
ENSXCOG00000013494	-	94	86.677	ENSNLEG00000012389	SMARCA4	94	79.439	Nomascus_leucogenys
ENSXCOG00000013494	-	80	96.552	ENSOPRG00000000885	-	79	96.552	Ochotona_princeps
ENSXCOG00000013494	-	98	85.560	ENSODEG00000017127	SMARCA4	99	84.674	Octodon_degus
ENSXCOG00000013494	-	98	84.814	ENSONIG00000008196	smarca4a	99	84.121	Oreochromis_niloticus
ENSXCOG00000013494	-	98	87.485	ENSONIG00000018040	-	99	87.790	Oreochromis_niloticus
ENSXCOG00000013494	-	97	79.719	ENSOCUG00000001787	SMARCA4	98	78.608	Oryctolagus_cuniculus
ENSXCOG00000013494	-	94	82.578	ENSORLG00000015452	smarca4a	99	83.229	Oryzias_latipes
ENSXCOG00000013494	-	96	91.389	ENSORLG00000003955	-	98	89.193	Oryzias_latipes
ENSXCOG00000013494	-	94	82.513	ENSORLG00020004611	smarca4a	99	85.663	Oryzias_latipes_hni
ENSXCOG00000013494	-	96	91.464	ENSORLG00020009728	-	98	89.417	Oryzias_latipes_hni
ENSXCOG00000013494	-	94	82.513	ENSORLG00015016560	smarca4a	99	83.105	Oryzias_latipes_hsok
ENSXCOG00000013494	-	98	85.976	ENSORLG00015007739	-	99	85.723	Oryzias_latipes_hsok
ENSXCOG00000013494	-	98	82.636	ENSOMEG00000007486	smarca4a	99	83.385	Oryzias_melastigma
ENSXCOG00000013494	-	95	87.571	ENSOMEG00000016626	-	99	86.150	Oryzias_melastigma
ENSXCOG00000013494	-	88	89.497	ENSOGAG00000016148	SMARCA4	98	88.321	Otolemur_garnettii
ENSXCOG00000013494	-	97	85.505	ENSPPAG00000043191	SMARCA4	91	91.870	Pan_paniscus
ENSXCOG00000013494	-	97	85.505	ENSPTRG00000010488	SMARCA4	91	91.870	Pan_troglodytes
ENSXCOG00000013494	-	97	86.504	ENSPANG00000011042	SMARCA4	91	91.870	Papio_anubis
ENSXCOG00000013494	-	98	86.550	ENSPKIG00000007770	SMARCA4	98	86.216	Paramormyrops_kingsleyae
ENSXCOG00000013494	-	95	85.620	ENSPKIG00000010087	-	96	84.685	Paramormyrops_kingsleyae
ENSXCOG00000013494	-	98	81.071	ENSPSIG00000005547	SMARCA4	99	81.024	Pelodiscus_sinensis
ENSXCOG00000013494	-	84	90.699	ENSPCIG00000017138	SMARCA4	99	82.999	Phascolarctos_cinereus
ENSXCOG00000013494	-	98	76.993	ENSPFOG00000007892	smarca4a	81	87.500	Poecilia_formosa
ENSXCOG00000013494	-	93	99.296	ENSPFOG00000012930	-	99	88.335	Poecilia_formosa
ENSXCOG00000013494	-	98	85.007	ENSPLAG00000014294	smarca4a	99	84.896	Poecilia_latipinna
ENSXCOG00000013494	-	99	94.521	ENSPLAG00000018616	-	99	93.898	Poecilia_latipinna
ENSXCOG00000013494	-	99	95.431	ENSPMEG00000008929	-	99	95.431	Poecilia_mexicana
ENSXCOG00000013494	-	98	81.603	ENSPMEG00000003725	smarca4a	96	84.547	Poecilia_mexicana
ENSXCOG00000013494	-	98	81.784	ENSPREG00000014608	smarca4a	99	84.096	Poecilia_reticulata
ENSXCOG00000013494	-	99	94.008	ENSPREG00000014823	-	99	94.008	Poecilia_reticulata
ENSXCOG00000013494	-	78	81.457	ENSPCAG00000014054	SMARCA4	77	81.457	Procavia_capensis
ENSXCOG00000013494	-	97	87.528	ENSPCOG00000023011	SMARCA4	99	82.301	Propithecus_coquereli
ENSXCOG00000013494	-	77	75.688	ENSPVAG00000007787	SMARCA4	94	73.581	Pteropus_vampyrus
ENSXCOG00000013494	-	98	87.622	ENSPNYG00000000717	smarca4a	95	87.948	Pundamilia_nyererei
ENSXCOG00000013494	-	94	93.631	ENSPNYG00000023995	-	98	94.038	Pundamilia_nyererei
ENSXCOG00000013494	-	97	87.708	ENSPNAG00000024136	smarca4a	98	86.894	Pygocentrus_nattereri
ENSXCOG00000013494	-	94	85.918	ENSPNAG00000006636	-	93	85.946	Pygocentrus_nattereri
ENSXCOG00000013494	-	97	87.500	ENSRBIG00000038696	SMARCA4	91	91.870	Rhinopithecus_bieti
ENSXCOG00000013494	-	97	87.500	ENSRROG00000045509	SMARCA4	91	91.870	Rhinopithecus_roxellana
ENSXCOG00000013494	-	97	87.102	ENSSBOG00000026896	SMARCA4	99	82.434	Saimiri_boliviensis_boliviensis
ENSXCOG00000013494	-	84	90.469	ENSSHAG00000001642	SMARCA4	99	82.873	Sarcophilus_harrisii
ENSXCOG00000013494	-	95	81.560	ENSSFOG00015009921	-	96	83.725	Scleropages_formosus
ENSXCOG00000013494	-	98	86.718	ENSSFOG00015013823	smarca4	97	87.091	Scleropages_formosus
ENSXCOG00000013494	-	98	85.393	ENSSMAG00000014082	-	99	85.401	Scophthalmus_maximus
ENSXCOG00000013494	-	94	84.211	ENSSMAG00000003200	smarca4a	97	83.471	Scophthalmus_maximus
ENSXCOG00000013494	-	94	80.732	ENSSDUG00000017298	smarca4a	99	80.515	Seriola_dumerili
ENSXCOG00000013494	-	99	90.724	ENSSDUG00000005388	-	96	90.600	Seriola_dumerili
ENSXCOG00000013494	-	96	91.467	ENSSLDG00000023663	-	99	91.338	Seriola_lalandi_dorsalis
ENSXCOG00000013494	-	98	83.026	ENSSLDG00000024486	smarca4a	100	86.393	Seriola_lalandi_dorsalis
ENSXCOG00000013494	-	64	96.894	ENSSARG00000013477	SMARCA4	79	96.894	Sorex_araneus
ENSXCOG00000013494	-	94	79.909	ENSSPUG00000004558	SMARCA4	98	80.545	Sphenodon_punctatus
ENSXCOG00000013494	-	98	87.111	ENSSPAG00000004248	smarca4a	99	87.168	Stegastes_partitus
ENSXCOG00000013494	-	99	91.645	ENSSPAG00000012533	-	98	91.902	Stegastes_partitus
ENSXCOG00000013494	-	55	85.006	ENSTGUG00000015488	-	98	84.780	Taeniopygia_guttata
ENSXCOG00000013494	-	96	85.535	ENSTRUG00000001378	SMARCA4	99	84.158	Takifugu_rubripes
ENSXCOG00000013494	-	88	83.428	ENSTRUG00000004885	smarca4a	100	84.006	Takifugu_rubripes
ENSXCOG00000013494	-	71	82.979	ENSTNIG00000004859	-	100	82.393	Tetraodon_nigroviridis
ENSXCOG00000013494	-	98	85.803	ENSTNIG00000004536	SMARCA4	99	86.426	Tetraodon_nigroviridis
ENSXCOG00000013494	-	95	85.265	ENSUMAG00000022005	SMARCA4	98	89.602	Ursus_maritimus
ENSXCOG00000013494	-	98	80.595	ENSXETG00000009355	smarca4	99	80.415	Xenopus_tropicalis
ENSXCOG00000013494	-	98	81.017	ENSXMAG00000006321	smarca4a	100	84.457	Xiphophorus_maculatus
ENSXCOG00000013494	-	99	96.929	ENSXMAG00000007030	-	99	96.929	Xiphophorus_maculatus