EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: ENSXCOG00000013570 (Gene tree)
Gene ID: -
Gene Symbol: zc3hc1
Alias: zgc:154099
Full Name: zinc finger%2C C3HC-type containing 1
Gene Type: protein_coding
Species: Xiphophorus_couchianus
Status: putative
Strand: Minus strand
Length: 4599 bases
Position: chrKQ557209.1:4919324-4923922
Accession: ZDB-GENE-061013-94
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSXCOP00000018011	zf-C3HC	PF07967.13	5.8e-30	1	1
ENSXCOP00000018012	zf-C3HC	PF07967.13	6.1e-27	1	1
ENSXCOP00000018011	Rsm1	PF08600.10	5.8e-13	1	1
ENSXCOP00000018012	Rsm1	PF08600.10	3.7e-12	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSXCOT00000018238	-	1464	-	ENSXCOP00000018011	487 (aa)	-	-
ENSXCOT00000018239	-	1167	-	ENSXCOP00000018012	388 (aa)	-	-

Gene Model

Click here to download ENSXCOG00000013570's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSXCOG00000013570's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSXCOG00000013570	zc3hc1	93	43.947	ENSG00000091732	ZC3HC1	95	42.449	Homo_sapiens
ENSXCOG00000013570	zc3hc1	100	76.000	ENSAPOG00000009078	zc3hc1	100	76.000	Acanthochromis_polyacanthus
ENSXCOG00000013570	zc3hc1	96	42.400	ENSAMEG00000005425	ZC3HC1	96	42.972	Ailuropoda_melanoleuca
ENSXCOG00000013570	zc3hc1	99	75.952	ENSACIG00000019513	zc3hc1	99	75.952	Amphilophus_citrinellus
ENSXCOG00000013570	zc3hc1	100	74.349	ENSAOCG00000024310	zc3hc1	100	75.200	Amphiprion_ocellaris
ENSXCOG00000013570	zc3hc1	100	73.948	ENSAPEG00000004907	zc3hc1	100	74.800	Amphiprion_percula
ENSXCOG00000013570	zc3hc1	95	71.519	ENSATEG00000016898	zc3hc1	90	73.733	Anabas_testudineus
ENSXCOG00000013570	zc3hc1	91	38.663	ENSAPLG00000003832	ZC3HC1	96	42.022	Anas_platyrhynchos
ENSXCOG00000013570	zc3hc1	97	41.036	ENSACAG00000001638	ZC3HC1	97	41.036	Anolis_carolinensis
ENSXCOG00000013570	zc3hc1	96	42.315	ENSANAG00000022213	ZC3HC1	96	42.886	Aotus_nancymaae
ENSXCOG00000013570	zc3hc1	91	75.276	ENSACLG00000025033	zc3hc1	98	75.276	Astatotilapia_calliptera
ENSXCOG00000013570	zc3hc1	95	48.218	ENSAMXG00000036792	zc3hc1	97	48.218	Astyanax_mexicanus
ENSXCOG00000013570	zc3hc1	96	43.662	ENSBTAG00000011247	ZC3HC1	96	44.242	Bos_taurus
ENSXCOG00000013570	zc3hc1	96	41.235	ENSCJAG00000010536	ZC3HC1	96	41.800	Callithrix_jacchus
ENSXCOG00000013570	zc3hc1	96	42.857	ENSCAFG00000029401	-	94	43.030	Canis_familiaris
ENSXCOG00000013570	zc3hc1	96	42.857	ENSCAFG00000028735	-	96	43.030	Canis_familiaris
ENSXCOG00000013570	zc3hc1	96	43.260	ENSCAFG00000031850	-	96	43.434	Canis_familiaris
ENSXCOG00000013570	zc3hc1	96	43.200	ENSCAFG00000001499	-	94	43.373	Canis_familiaris
ENSXCOG00000013570	zc3hc1	97	44.975	ENSCAFG00020023333	-	96	43.863	Canis_lupus_dingo
ENSXCOG00000013570	zc3hc1	96	43.058	ENSCAFG00020006829	-	96	43.232	Canis_lupus_dingo
ENSXCOG00000013570	zc3hc1	96	39.759	ENSCHIG00000014103	ZC3HC1	95	40.323	Capra_hircus
ENSXCOG00000013570	zc3hc1	95	40.650	ENSTSYG00000002843	ZC3HC1	95	41.224	Carlito_syrichta
ENSXCOG00000013570	zc3hc1	94	35.121	ENSCAPG00000016300	ZC3HC1	96	35.762	Cavia_aperea
ENSXCOG00000013570	zc3hc1	97	44.388	ENSCPOG00000014034	ZC3HC1	96	42.799	Cavia_porcellus
ENSXCOG00000013570	zc3hc1	95	32.520	ENSCCAG00000020384	ZC3HC1	98	37.131	Cebus_capucinus
ENSXCOG00000013570	zc3hc1	95	43.377	ENSCATG00000023130	ZC3HC1	95	44.348	Cercocebus_atys
ENSXCOG00000013570	zc3hc1	99	31.683	ENSCLAG00000008260	ZC3HC1	99	32.277	Chinchilla_lanigera
ENSXCOG00000013570	zc3hc1	74	39.426	ENSCSAG00000009881	ZC3HC1	97	40.157	Chlorocebus_sabaeus
ENSXCOG00000013570	zc3hc1	96	39.556	ENSCHOG00000011846	ZC3HC1	99	43.844	Choloepus_hoffmanni
ENSXCOG00000013570	zc3hc1	96	42.570	ENSCPBG00000017519	ZC3HC1	96	42.369	Chrysemys_picta_bellii
ENSXCOG00000013570	zc3hc1	95	43.636	ENSCANG00000029091	ZC3HC1	96	42.222	Colobus_angolensis_palliatus
ENSXCOG00000013570	zc3hc1	97	43.655	ENSCGRG00001018805	Zc3hc1	96	42.626	Cricetulus_griseus_chok1gshd
ENSXCOG00000013570	zc3hc1	96	43.232	ENSCGRG00000017114	Zc3hc1	96	43.232	Cricetulus_griseus_crigri
ENSXCOG00000013570	zc3hc1	99	65.800	ENSCSEG00000009284	zc3hc1	98	65.800	Cynoglossus_semilaevis
ENSXCOG00000013570	zc3hc1	100	81.855	ENSCVAG00000011566	zc3hc1	99	81.855	Cyprinodon_variegatus
ENSXCOG00000013570	zc3hc1	99	56.513	ENSDARG00000062651	zc3hc1	99	56.513	Danio_rerio
ENSXCOG00000013570	zc3hc1	95	42.653	ENSDNOG00000045016	ZC3HC1	95	42.857	Dasypus_novemcinctus
ENSXCOG00000013570	zc3hc1	96	40.650	ENSDORG00000008697	Zc3hc1	95	40.612	Dipodomys_ordii
ENSXCOG00000013570	zc3hc1	98	40.998	ENSEASG00005008789	ZC3HC1	96	45.140	Equus_asinus_asinus
ENSXCOG00000013570	zc3hc1	96	42.771	ENSECAG00000017886	ZC3HC1	96	43.347	Equus_caballus
ENSXCOG00000013570	zc3hc1	64	47.273	ENSEEUG00000003123	ZC3HC1	64	47.273	Erinaceus_europaeus
ENSXCOG00000013570	zc3hc1	99	55.098	ENSELUG00000023168	zc3hc1	100	56.556	Esox_lucius
ENSXCOG00000013570	zc3hc1	97	42.785	ENSFCAG00000010429	ZC3HC1	96	44.231	Felis_catus
ENSXCOG00000013570	zc3hc1	92	37.246	ENSFALG00000005006	ZC3HC1	95	40.919	Ficedula_albicollis
ENSXCOG00000013570	zc3hc1	97	44.051	ENSFDAG00000019897	ZC3HC1	99	41.779	Fukomys_damarensis
ENSXCOG00000013570	zc3hc1	100	84.879	ENSFHEG00000020149	zc3hc1	100	84.879	Fundulus_heteroclitus
ENSXCOG00000013570	zc3hc1	98	60.700	ENSGMOG00000002914	zc3hc1	99	60.700	Gadus_morhua
ENSXCOG00000013570	zc3hc1	94	39.673	ENSGALG00000008003	ZC3HC1	95	39.877	Gallus_gallus
ENSXCOG00000013570	zc3hc1	100	93.750	ENSGAFG00000016095	zc3hc1	100	93.750	Gambusia_affinis
ENSXCOG00000013570	zc3hc1	99	68.548	ENSGACG00000019706	zc3hc1	99	68.548	Gasterosteus_aculeatus
ENSXCOG00000013570	zc3hc1	78	42.015	ENSGAGG00000016106	ZC3HC1	100	43.735	Gopherus_agassizii
ENSXCOG00000013570	zc3hc1	93	43.947	ENSGGOG00000015504	ZC3HC1	95	42.449	Gorilla_gorilla
ENSXCOG00000013570	zc3hc1	99	74.245	ENSHBUG00000008347	zc3hc1	99	74.245	Haplochromis_burtoni
ENSXCOG00000013570	zc3hc1	96	43.846	ENSHGLG00000005085	ZC3HC1	95	42.857	Heterocephalus_glaber_female
ENSXCOG00000013570	zc3hc1	96	43.959	ENSHGLG00100011395	ZC3HC1	95	42.945	Heterocephalus_glaber_male
ENSXCOG00000013570	zc3hc1	100	62.777	ENSHCOG00000014309	zc3hc1	100	63.454	Hippocampus_comes
ENSXCOG00000013570	zc3hc1	96	41.046	ENSSTOG00000023599	-	96	41.616	Ictidomys_tridecemlineatus
ENSXCOG00000013570	zc3hc1	99	73.684	ENSKMAG00000015315	zc3hc1	92	73.684	Kryptolebias_marmoratus
ENSXCOG00000013570	zc3hc1	99	66.068	ENSLBEG00000017325	zc3hc1	99	66.068	Labrus_bergylta
ENSXCOG00000013570	zc3hc1	80	42.331	ENSLACG00000013032	ZC3HC1	93	42.469	Latimeria_chalumnae
ENSXCOG00000013570	zc3hc1	99	50.884	ENSLOCG00000015963	zc3hc1	99	50.884	Lepisosteus_oculatus
ENSXCOG00000013570	zc3hc1	96	41.833	ENSLAFG00000001292	ZC3HC1	96	42.400	Loxodonta_africana
ENSXCOG00000013570	zc3hc1	95	43.636	ENSMFAG00000030176	ZC3HC1	95	44.565	Macaca_fascicularis
ENSXCOG00000013570	zc3hc1	95	43.636	ENSMMUG00000006155	ZC3HC1	95	44.565	Macaca_mulatta
ENSXCOG00000013570	zc3hc1	95	43.636	ENSMNEG00000011833	ZC3HC1	95	44.565	Macaca_nemestrina
ENSXCOG00000013570	zc3hc1	95	43.636	ENSMLEG00000027328	ZC3HC1	95	44.565	Mandrillus_leucophaeus
ENSXCOG00000013570	zc3hc1	99	73.695	ENSMAMG00000010691	zc3hc1	99	73.695	Mastacembelus_armatus
ENSXCOG00000013570	zc3hc1	99	74.245	ENSMZEG00005007142	zc3hc1	99	74.245	Maylandia_zebra
ENSXCOG00000013570	zc3hc1	97	36.505	ENSMGAG00000002977	ZC3HC1	98	37.331	Meleagris_gallopavo
ENSXCOG00000013570	zc3hc1	87	37.561	ENSMAUG00000017032	Zc3hc1	93	40.509	Mesocricetus_auratus
ENSXCOG00000013570	zc3hc1	95	43.782	ENSMICG00000009167	ZC3HC1	96	41.400	Microcebus_murinus
ENSXCOG00000013570	zc3hc1	96	42.626	ENSMOCG00000015239	Zc3hc1	96	42.828	Microtus_ochrogaster
ENSXCOG00000013570	zc3hc1	88	73.963	ENSMMOG00000002204	zc3hc1	99	73.963	Mola_mola
ENSXCOG00000013570	zc3hc1	98	34.160	ENSMODG00000014630	ZC3HC1	97	34.291	Monodelphis_domestica
ENSXCOG00000013570	zc3hc1	98	71.166	ENSMALG00000014447	zc3hc1	99	71.573	Monopterus_albus
ENSXCOG00000013570	zc3hc1	96	44.072	MGP_CAROLIEiJ_G0028183	Zc3hc1	96	43.117	Mus_caroli
ENSXCOG00000013570	zc3hc1	96	43.367	ENSMUSG00000039130	Zc3hc1	96	42.369	Mus_musculus
ENSXCOG00000013570	zc3hc1	95	41.146	MGP_PahariEiJ_G0021941	Zc3hc1	94	39.351	Mus_pahari
ENSXCOG00000013570	zc3hc1	97	43.073	MGP_SPRETEiJ_G0029183	Zc3hc1	96	42.169	Mus_spretus
ENSXCOG00000013570	zc3hc1	90	42.184	ENSMPUG00000005297	ZC3HC1	89	42.796	Mustela_putorius_furo
ENSXCOG00000013570	zc3hc1	67	38.136	ENSMLUG00000029228	-	98	38.068	Myotis_lucifugus
ENSXCOG00000013570	zc3hc1	96	43.227	ENSMLUG00000000063	-	96	43.200	Myotis_lucifugus
ENSXCOG00000013570	zc3hc1	95	45.337	ENSNGAG00000019014	Zc3hc1	96	43.030	Nannospalax_galili
ENSXCOG00000013570	zc3hc1	99	74.245	ENSNBRG00000004577	zc3hc1	99	74.245	Neolamprologus_brichardi
ENSXCOG00000013570	zc3hc1	92	43.700	ENSNLEG00000012698	ZC3HC1	96	40.214	Nomascus_leucogenys
ENSXCOG00000013570	zc3hc1	98	41.339	ENSMEUG00000011023	ZC3HC1	97	41.304	Notamacropus_eugenii
ENSXCOG00000013570	zc3hc1	94	42.147	ENSODEG00000014604	ZC3HC1	96	40.800	Octodon_degus
ENSXCOG00000013570	zc3hc1	99	74.044	ENSONIG00000011644	zc3hc1	99	74.044	Oreochromis_niloticus
ENSXCOG00000013570	zc3hc1	94	34.437	ENSOANG00000011460	ZC3HC1	97	38.661	Ornithorhynchus_anatinus
ENSXCOG00000013570	zc3hc1	96	41.717	ENSOCUG00000017137	ZC3HC1	96	42.285	Oryctolagus_cuniculus
ENSXCOG00000013570	zc3hc1	99	69.450	ENSORLG00000014409	zc3hc1	98	69.697	Oryzias_latipes
ENSXCOG00000013570	zc3hc1	99	69.857	ENSORLG00020015874	zc3hc1	98	70.101	Oryzias_latipes_hni
ENSXCOG00000013570	zc3hc1	99	69.857	ENSORLG00015014641	zc3hc1	98	70.101	Oryzias_latipes_hsok
ENSXCOG00000013570	zc3hc1	99	70.468	ENSOMEG00000020604	zc3hc1	99	70.707	Oryzias_melastigma
ENSXCOG00000013570	zc3hc1	99	70.672	ENSOMEG00000000215	zc3hc1	99	70.909	Oryzias_melastigma
ENSXCOG00000013570	zc3hc1	95	42.529	ENSOGAG00000026193	ZC3HC1	96	39.394	Otolemur_garnettii
ENSXCOG00000013570	zc3hc1	96	43.000	ENSOARG00000004907	ZC3HC1	94	43.574	Ovis_aries
ENSXCOG00000013570	zc3hc1	93	43.947	ENSPPAG00000043172	ZC3HC1	95	42.449	Pan_paniscus
ENSXCOG00000013570	zc3hc1	96	42.564	ENSPPRG00000001004	ZC3HC1	95	43.844	Panthera_pardus
ENSXCOG00000013570	zc3hc1	97	42.785	ENSPTIG00000007823	ZC3HC1	96	44.231	Panthera_tigris_altaica
ENSXCOG00000013570	zc3hc1	95	41.667	ENSPTRG00000019685	ZC3HC1	95	42.245	Pan_troglodytes
ENSXCOG00000013570	zc3hc1	95	43.636	ENSPANG00000014229	ZC3HC1	95	44.565	Papio_anubis
ENSXCOG00000013570	zc3hc1	99	49.213	ENSPKIG00000007172	zc3hc1	99	49.213	Paramormyrops_kingsleyae
ENSXCOG00000013570	zc3hc1	93	38.149	ENSPSIG00000016646	ZC3HC1	87	41.703	Pelodiscus_sinensis
ENSXCOG00000013570	zc3hc1	95	64.987	ENSPMGG00000003548	zc3hc1	93	65.526	Periophthalmus_magnuspinnatus
ENSXCOG00000013570	zc3hc1	97	42.386	ENSPEMG00000000514	Zc3hc1	96	42.222	Peromyscus_maniculatus_bairdii
ENSXCOG00000013570	zc3hc1	96	40.438	ENSPCIG00000020619	ZC3HC1	100	41.363	Phascolarctos_cinereus
ENSXCOG00000013570	zc3hc1	100	91.919	ENSPFOG00000003466	zc3hc1	100	91.919	Poecilia_formosa
ENSXCOG00000013570	zc3hc1	100	91.935	ENSPLAG00000022211	zc3hc1	100	91.935	Poecilia_latipinna
ENSXCOG00000013570	zc3hc1	100	91.935	ENSPMEG00000001458	zc3hc1	100	91.935	Poecilia_mexicana
ENSXCOG00000013570	zc3hc1	100	91.734	ENSPREG00000004004	zc3hc1	100	91.734	Poecilia_reticulata
ENSXCOG00000013570	zc3hc1	95	40.283	ENSPPYG00000017998	ZC3HC1	95	40.854	Pongo_abelii
ENSXCOG00000013570	zc3hc1	94	39.180	ENSPCAG00000001182	ZC3HC1	95	43.805	Procavia_capensis
ENSXCOG00000013570	zc3hc1	95	45.078	ENSPCOG00000017354	ZC3HC1	96	42.020	Propithecus_coquereli
ENSXCOG00000013570	zc3hc1	95	40.246	ENSPVAG00000003195	ZC3HC1	95	40.452	Pteropus_vampyrus
ENSXCOG00000013570	zc3hc1	99	74.245	ENSPNYG00000020692	zc3hc1	99	74.245	Pundamilia_nyererei
ENSXCOG00000013570	zc3hc1	98	48.262	ENSPNAG00000020746	zc3hc1	100	48.262	Pygocentrus_nattereri
ENSXCOG00000013570	zc3hc1	96	41.517	ENSRNOG00000010154	Zc3hc1	96	41.717	Rattus_norvegicus
ENSXCOG00000013570	zc3hc1	95	43.636	ENSRBIG00000029409	ZC3HC1	98	44.416	Rhinopithecus_bieti
ENSXCOG00000013570	zc3hc1	95	43.636	ENSRROG00000041831	ZC3HC1	94	44.565	Rhinopithecus_roxellana
ENSXCOG00000013570	zc3hc1	78	61.972	ENSSBOG00000032787	ZC3HC1	84	61.972	Saimiri_boliviensis_boliviensis
ENSXCOG00000013570	zc3hc1	94	39.456	ENSSHAG00000002529	ZC3HC1	94	42.358	Sarcophilus_harrisii
ENSXCOG00000013570	zc3hc1	97	50.100	ENSSFOG00015003667	zc3hc1	93	50.100	Scleropages_formosus
ENSXCOG00000013570	zc3hc1	99	72.490	ENSSMAG00000000647	zc3hc1	90	72.892	Scophthalmus_maximus
ENSXCOG00000013570	zc3hc1	99	73.992	ENSSDUG00000004241	zc3hc1	97	73.992	Seriola_dumerili
ENSXCOG00000013570	zc3hc1	99	74.798	ENSSLDG00000025056	zc3hc1	97	74.798	Seriola_lalandi_dorsalis
ENSXCOG00000013570	zc3hc1	96	38.028	ENSSARG00000012013	ZC3HC1	96	38.586	Sorex_araneus
ENSXCOG00000013570	zc3hc1	90	36.649	ENSSPUG00000000778	ZC3HC1	84	36.554	Sphenodon_punctatus
ENSXCOG00000013570	zc3hc1	100	77.400	ENSSPAG00000020041	zc3hc1	100	77.400	Stegastes_partitus
ENSXCOG00000013570	zc3hc1	97	44.081	ENSSSCG00000016565	ZC3HC1	100	42.574	Sus_scrofa
ENSXCOG00000013570	zc3hc1	100	63.527	ENSTRUG00000020077	zc3hc1	100	63.527	Takifugu_rubripes
ENSXCOG00000013570	zc3hc1	99	62.823	ENSTNIG00000007585	zc3hc1	99	63.579	Tetraodon_nigroviridis
ENSXCOG00000013570	zc3hc1	95	35.772	ENSTBEG00000005216	ZC3HC1	95	36.122	Tupaia_belangeri
ENSXCOG00000013570	zc3hc1	95	42.596	ENSTTRG00000008458	ZC3HC1	99	43.381	Tursiops_truncatus
ENSXCOG00000013570	zc3hc1	96	42.455	ENSUAMG00000020249	ZC3HC1	96	43.030	Ursus_americanus
ENSXCOG00000013570	zc3hc1	96	42.455	ENSUMAG00000009268	ZC3HC1	96	43.030	Ursus_maritimus
ENSXCOG00000013570	zc3hc1	73	42.712	ENSVPAG00000010846	ZC3HC1	61	42.056	Vicugna_pacos
ENSXCOG00000013570	zc3hc1	90	43.255	ENSVVUG00000012386	ZC3HC1	94	43.441	Vulpes_vulpes
ENSXCOG00000013570	zc3hc1	89	39.207	ENSXETG00000033900	zc3hc1	92	39.207	Xenopus_tropicalis
ENSXCOG00000013570	zc3hc1	91	96.239	ENSXMAG00000010979	zc3hc1	98	96.239	Xiphophorus_maculatus