EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: ENSXCOG00000013629 (Gene tree)
Gene ID: -
Gene Symbol: snd1
Alias: SN4TDR|TDRD11|p100L|p100S|wu:fc27g10
Full Name: staphylococcal nuclease and tudor domain containing 1
Gene Type: protein_coding
Species: Xiphophorus_couchianus
Status: putative
Strand: Plus strand
Length: 156851 bases
Position: chrKQ557209.1:5720128-5876978
Accession: ZDB-GENE-030131-3124
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSXCOP00000018081	TUDOR	PF00567.24	2.1e-09	1	1
ENSXCOP00000018081	SNase	PF00565.17	1e-62	1	4
ENSXCOP00000018081	SNase	PF00565.17	1e-62	2	4
ENSXCOP00000018081	SNase	PF00565.17	1e-62	3	4
ENSXCOP00000018081	SNase	PF00565.17	1e-62	4	4

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSXCOT00000018310	-	2505	-	ENSXCOP00000018081	834 (aa)	-	-

Gene Model

Click here to download ENSXCOG00000013629's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSXCOG00000013629's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSXCOG00000013629	snd1	99	81.710	ENSG00000197157	SND1	92	81.710	Homo_sapiens
ENSXCOG00000013629	snd1	99	93.824	ENSAPOG00000017599	snd1	92	93.824	Acanthochromis_polyacanthus
ENSXCOG00000013629	snd1	99	81.280	ENSAMEG00000004664	SND1	87	81.280	Ailuropoda_melanoleuca
ENSXCOG00000013629	snd1	99	89.549	ENSACIG00000003551	snd1	92	89.549	Amphilophus_citrinellus
ENSXCOG00000013629	snd1	99	93.943	ENSAOCG00000014166	snd1	92	93.943	Amphiprion_ocellaris
ENSXCOG00000013629	snd1	99	93.824	ENSAPEG00000007067	snd1	92	93.824	Amphiprion_percula
ENSXCOG00000013629	snd1	99	93.468	ENSATEG00000018475	snd1	84	93.468	Anabas_testudineus
ENSXCOG00000013629	snd1	99	81.591	ENSANAG00000034463	SND1	94	81.591	Aotus_nancymaae
ENSXCOG00000013629	snd1	99	92.043	ENSACLG00000022897	snd1	92	92.043	Astatotilapia_calliptera
ENSXCOG00000013629	snd1	99	87.559	ENSAMXG00000016318	snd1	93	88.053	Astyanax_mexicanus
ENSXCOG00000013629	snd1	99	81.710	ENSBTAG00000010692	SND1	92	81.710	Bos_taurus
ENSXCOG00000013629	snd1	98	46.208	WBGene00006626	tsn-1	92	46.208	Caenorhabditis_elegans
ENSXCOG00000013629	snd1	99	81.354	ENSCJAG00000017668	SND1	94	81.354	Callithrix_jacchus
ENSXCOG00000013629	snd1	99	81.591	ENSCAFG00000001700	SND1	92	81.591	Canis_familiaris
ENSXCOG00000013629	snd1	99	81.591	ENSCAFG00020021639	SND1	92	81.591	Canis_lupus_dingo
ENSXCOG00000013629	snd1	99	81.591	ENSCHIG00000023390	SND1	93	81.591	Capra_hircus
ENSXCOG00000013629	snd1	74	87.523	ENSTSYG00000004979	SND1	93	87.523	Carlito_syrichta
ENSXCOG00000013629	snd1	99	70.735	ENSCAPG00000010677	SND1	92	70.106	Cavia_aperea
ENSXCOG00000013629	snd1	99	81.473	ENSCPOG00000006251	SND1	92	81.473	Cavia_porcellus
ENSXCOG00000013629	snd1	99	81.591	ENSCCAG00000036847	SND1	93	81.591	Cebus_capucinus
ENSXCOG00000013629	snd1	99	81.591	ENSCATG00000035214	SND1	95	81.591	Cercocebus_atys
ENSXCOG00000013629	snd1	99	81.591	ENSCLAG00000011796	SND1	90	87.342	Chinchilla_lanigera
ENSXCOG00000013629	snd1	99	81.591	ENSCSAG00000010182	SND1	92	81.591	Chlorocebus_sabaeus
ENSXCOG00000013629	snd1	81	64.312	ENSCHOG00000002218	SND1	83	64.312	Choloepus_hoffmanni
ENSXCOG00000013629	snd1	99	82.185	ENSCPBG00000018094	SND1	93	82.185	Chrysemys_picta_bellii
ENSXCOG00000013629	snd1	98	53.964	ENSCING00000000524	-	92	53.728	Ciona_intestinalis
ENSXCOG00000013629	snd1	98	55.238	ENSCSAVG00000008807	-	91	55.012	Ciona_savignyi
ENSXCOG00000013629	snd1	99	81.591	ENSCANG00000035119	SND1	92	81.591	Colobus_angolensis_palliatus
ENSXCOG00000013629	snd1	99	80.879	ENSCGRG00001022514	Snd1	91	86.980	Cricetulus_griseus_chok1gshd
ENSXCOG00000013629	snd1	99	80.879	ENSCGRG00000012277	Snd1	95	80.879	Cricetulus_griseus_crigri
ENSXCOG00000013629	snd1	99	91.449	ENSCSEG00000008661	snd1	94	92.077	Cynoglossus_semilaevis
ENSXCOG00000013629	snd1	99	94.418	ENSCVAG00000010316	snd1	96	95.090	Cyprinodon_variegatus
ENSXCOG00000013629	snd1	99	86.951	ENSDARG00000006766	snd1	91	92.557	Danio_rerio
ENSXCOG00000013629	snd1	99	79.384	ENSDNOG00000006795	SND1	95	79.384	Dasypus_novemcinctus
ENSXCOG00000013629	snd1	99	81.354	ENSDORG00000000336	Snd1	92	81.354	Dipodomys_ordii
ENSXCOG00000013629	snd1	98	49.070	FBgn0035121	Tudor-SN	91	48.953	Drosophila_melanogaster
ENSXCOG00000013629	snd1	90	64.706	ENSETEG00000000375	SND1	86	64.706	Echinops_telfairi
ENSXCOG00000013629	snd1	66	65.183	ENSEBUG00000014201	-	84	77.174	Eptatretus_burgeri
ENSXCOG00000013629	snd1	99	81.473	ENSEASG00005008513	SND1	92	80.163	Equus_asinus_asinus
ENSXCOG00000013629	snd1	99	81.354	ENSECAG00000011451	SND1	92	81.235	Equus_caballus
ENSXCOG00000013629	snd1	98	74.550	ENSEEUG00000014737	SND1	91	74.550	Erinaceus_europaeus
ENSXCOG00000013629	snd1	99	86.667	ENSELUG00000001805	snd1	89	86.667	Esox_lucius
ENSXCOG00000013629	snd1	99	81.591	ENSFCAG00000008289	SND1	92	81.591	Felis_catus
ENSXCOG00000013629	snd1	99	81.235	ENSFDAG00000015881	SND1	92	81.235	Fukomys_damarensis
ENSXCOG00000013629	snd1	98	94.838	ENSFHEG00000004093	snd1	94	94.838	Fundulus_heteroclitus
ENSXCOG00000013629	snd1	72	75.535	ENSGMOG00000018932	snd1	58	75.535	Gadus_morhua
ENSXCOG00000013629	snd1	99	95.962	ENSGAFG00000008421	snd1	95	95.962	Gambusia_affinis
ENSXCOG00000013629	snd1	99	55.803	ENSGACG00000019793	snd1	92	55.803	Gasterosteus_aculeatus
ENSXCOG00000013629	snd1	99	81.829	ENSGGOG00000009614	SND1	94	81.829	Gorilla_gorilla
ENSXCOG00000013629	snd1	99	91.924	ENSHBUG00000019135	snd1	93	91.924	Haplochromis_burtoni
ENSXCOG00000013629	snd1	99	81.235	ENSHGLG00000003618	SND1	90	87.161	Heterocephalus_glaber_female
ENSXCOG00000013629	snd1	99	81.235	ENSHGLG00100012449	SND1	93	81.235	Heterocephalus_glaber_male
ENSXCOG00000013629	snd1	99	90.143	ENSHCOG00000005266	snd1	92	90.143	Hippocampus_comes
ENSXCOG00000013629	snd1	99	86.256	ENSIPUG00000013279	snd1	92	86.256	Ictalurus_punctatus
ENSXCOG00000013629	snd1	99	81.473	ENSSTOG00000002140	SND1	92	81.473	Ictidomys_tridecemlineatus
ENSXCOG00000013629	snd1	99	81.473	ENSJJAG00000009561	Snd1	92	81.473	Jaculus_jaculus
ENSXCOG00000013629	snd1	99	94.656	ENSKMAG00000016997	snd1	92	94.656	Kryptolebias_marmoratus
ENSXCOG00000013629	snd1	99	91.330	ENSLBEG00000013563	snd1	93	91.737	Labrus_bergylta
ENSXCOG00000013629	snd1	99	85.194	ENSLOCG00000015537	snd1	92	85.194	Lepisosteus_oculatus
ENSXCOG00000013629	snd1	99	81.710	ENSLAFG00000009696	SND1	92	81.710	Loxodonta_africana
ENSXCOG00000013629	snd1	99	81.591	ENSMFAG00000038114	SND1	95	81.591	Macaca_fascicularis
ENSXCOG00000013629	snd1	99	81.591	ENSMMUG00000015432	SND1	90	87.636	Macaca_mulatta
ENSXCOG00000013629	snd1	99	81.591	ENSMNEG00000039808	SND1	94	87.636	Macaca_nemestrina
ENSXCOG00000013629	snd1	99	81.473	ENSMLEG00000029040	SND1	94	87.636	Mandrillus_leucophaeus
ENSXCOG00000013629	snd1	99	92.280	ENSMAMG00000011739	snd1	92	92.280	Mastacembelus_armatus
ENSXCOG00000013629	snd1	99	92.043	ENSMZEG00005005681	snd1	93	92.455	Maylandia_zebra
ENSXCOG00000013629	snd1	99	81.473	ENSMICG00000000097	SND1	92	81.473	Microcebus_murinus
ENSXCOG00000013629	snd1	99	81.473	ENSMOCG00000005040	Snd1	92	81.473	Microtus_ochrogaster
ENSXCOG00000013629	snd1	99	92.280	ENSMMOG00000001795	snd1	92	92.280	Mola_mola
ENSXCOG00000013629	snd1	99	80.641	ENSMODG00000015182	SND1	92	80.641	Monodelphis_domestica
ENSXCOG00000013629	snd1	99	92.637	ENSMALG00000012071	snd1	93	93.293	Monopterus_albus
ENSXCOG00000013629	snd1	99	80.998	MGP_CAROLIEiJ_G0028159	Snd1	92	86.957	Mus_caroli
ENSXCOG00000013629	snd1	99	80.760	ENSMUSG00000001424	Snd1	92	85.133	Mus_musculus
ENSXCOG00000013629	snd1	99	80.998	MGP_PahariEiJ_G0021917	Snd1	93	86.957	Mus_pahari
ENSXCOG00000013629	snd1	99	80.998	MGP_SPRETEiJ_G0029159	Snd1	92	85.487	Mus_spretus
ENSXCOG00000013629	snd1	99	81.354	ENSMPUG00000006545	SND1	92	80.879	Mustela_putorius_furo
ENSXCOG00000013629	snd1	99	80.305	ENSMLUG00000017130	SND1	95	79.601	Myotis_lucifugus
ENSXCOG00000013629	snd1	99	81.354	ENSNGAG00000011186	Snd1	92	81.354	Nannospalax_galili
ENSXCOG00000013629	snd1	99	92.043	ENSNBRG00000006681	snd1	92	92.043	Neolamprologus_brichardi
ENSXCOG00000013629	snd1	99	81.829	ENSNLEG00000012263	SND1	92	87.681	Nomascus_leucogenys
ENSXCOG00000013629	snd1	90	73.856	ENSOPRG00000013405	SND1	84	73.368	Ochotona_princeps
ENSXCOG00000013629	snd1	99	81.710	ENSODEG00000011502	SND1	92	81.710	Octodon_degus
ENSXCOG00000013629	snd1	99	92.162	ENSONIG00000011481	snd1	90	92.162	Oreochromis_niloticus
ENSXCOG00000013629	snd1	99	81.116	ENSOANG00000000817	SND1	92	81.116	Ornithorhynchus_anatinus
ENSXCOG00000013629	snd1	99	80.879	ENSOCUG00000001620	SND1	92	80.879	Oryctolagus_cuniculus
ENSXCOG00000013629	snd1	99	91.568	ENSORLG00000015201	snd1	94	91.568	Oryzias_latipes
ENSXCOG00000013629	snd1	99	91.805	ENSORLG00020013991	snd1	94	91.805	Oryzias_latipes_hni
ENSXCOG00000013629	snd1	99	91.805	ENSORLG00015012436	snd1	92	91.805	Oryzias_latipes_hsok
ENSXCOG00000013629	snd1	99	91.924	ENSOMEG00000006406	snd1	92	91.924	Oryzias_melastigma
ENSXCOG00000013629	snd1	99	81.398	ENSOGAG00000013356	SND1	87	81.398	Otolemur_garnettii
ENSXCOG00000013629	snd1	99	79.097	ENSOARG00000002149	SND1	95	79.097	Ovis_aries
ENSXCOG00000013629	snd1	99	81.710	ENSPPAG00000042947	SND1	94	81.710	Pan_paniscus
ENSXCOG00000013629	snd1	99	81.591	ENSPPRG00000004494	SND1	92	81.591	Panthera_pardus
ENSXCOG00000013629	snd1	99	81.473	ENSPTIG00000014214	SND1	93	81.473	Panthera_tigris_altaica
ENSXCOG00000013629	snd1	99	81.710	ENSPTRG00000023911	SND1	94	81.710	Pan_troglodytes
ENSXCOG00000013629	snd1	99	81.591	ENSPANG00000011997	SND1	95	81.591	Papio_anubis
ENSXCOG00000013629	snd1	99	84.099	ENSPKIG00000023494	snd1	92	84.099	Paramormyrops_kingsleyae
ENSXCOG00000013629	snd1	98	92.096	ENSPMGG00000003629	snd1	99	92.096	Periophthalmus_magnuspinnatus
ENSXCOG00000013629	snd1	99	81.235	ENSPEMG00000010240	Snd1	92	81.235	Peromyscus_maniculatus_bairdii
ENSXCOG00000013629	snd1	98	73.628	ENSPMAG00000007915	-	94	73.508	Petromyzon_marinus
ENSXCOG00000013629	snd1	99	81.235	ENSPCIG00000011561	SND1	92	81.235	Phascolarctos_cinereus
ENSXCOG00000013629	snd1	99	95.487	ENSPFOG00000001557	snd1	92	95.487	Poecilia_formosa
ENSXCOG00000013629	snd1	99	95.487	ENSPLAG00000018459	snd1	90	95.487	Poecilia_latipinna
ENSXCOG00000013629	snd1	99	95.724	ENSPMEG00000006803	snd1	92	95.724	Poecilia_mexicana
ENSXCOG00000013629	snd1	99	95.487	ENSPREG00000002189	snd1	92	96.158	Poecilia_reticulata
ENSXCOG00000013629	snd1	90	83.399	ENSPPYG00000017972	SND1	91	83.399	Pongo_abelii
ENSXCOG00000013629	snd1	99	70.665	ENSPCAG00000011305	SND1	92	70.665	Procavia_capensis
ENSXCOG00000013629	snd1	99	81.591	ENSPCOG00000026791	SND1	92	84.948	Propithecus_coquereli
ENSXCOG00000013629	snd1	99	79.335	ENSPVAG00000013945	SND1	92	79.335	Pteropus_vampyrus
ENSXCOG00000013629	snd1	99	91.924	ENSPNYG00000000932	snd1	92	91.924	Pundamilia_nyererei
ENSXCOG00000013629	snd1	99	87.796	ENSPNAG00000001206	snd1	92	87.796	Pygocentrus_nattereri
ENSXCOG00000013629	snd1	99	80.879	ENSRNOG00000031173	Snd1	95	79.929	Rattus_norvegicus
ENSXCOG00000013629	snd1	74	88.372	ENSRBIG00000027782	-	90	88.372	Rhinopithecus_bieti
ENSXCOG00000013629	snd1	99	81.591	ENSRROG00000033020	SND1	92	81.591	Rhinopithecus_roxellana
ENSXCOG00000013629	snd1	99	81.473	ENSSBOG00000032461	SND1	93	85.490	Saimiri_boliviensis_boliviensis
ENSXCOG00000013629	snd1	99	78.147	ENSSHAG00000015359	SND1	95	78.147	Sarcophilus_harrisii
ENSXCOG00000013629	snd1	99	86.000	ENSSFOG00015001103	snd1	92	86.000	Scleropages_formosus
ENSXCOG00000013629	snd1	99	92.162	ENSSMAG00000001932	snd1	87	92.162	Scophthalmus_maximus
ENSXCOG00000013629	snd1	99	93.824	ENSSDUG00000002699	snd1	86	93.824	Seriola_dumerili
ENSXCOG00000013629	snd1	99	85.511	ENSSLDG00000001950	snd1	92	85.511	Seriola_lalandi_dorsalis
ENSXCOG00000013629	snd1	92	80.363	ENSSARG00000004877	SND1	90	80.363	Sorex_araneus
ENSXCOG00000013629	snd1	74	80.714	ENSSPUG00000017586	SND1	93	80.714	Sphenodon_punctatus
ENSXCOG00000013629	snd1	74	96.175	ENSSPAG00000021398	snd1	92	96.175	Stegastes_partitus
ENSXCOG00000013629	snd1	99	81.235	ENSSSCG00000016590	SND1	92	81.235	Sus_scrofa
ENSXCOG00000013629	snd1	99	90.336	ENSTRUG00000014067	snd1	92	90.143	Takifugu_rubripes
ENSXCOG00000013629	snd1	99	90.618	ENSTNIG00000011019	snd1	91	94.404	Tetraodon_nigroviridis
ENSXCOG00000013629	snd1	98	76.591	ENSTBEG00000003999	SND1	98	76.591	Tupaia_belangeri
ENSXCOG00000013629	snd1	99	76.841	ENSTTRG00000006059	SND1	92	76.841	Tursiops_truncatus
ENSXCOG00000013629	snd1	90	77.956	ENSUAMG00000005604	-	88	78.156	Ursus_americanus
ENSXCOG00000013629	snd1	70	78.235	ENSUAMG00000002820	-	78	78.235	Ursus_americanus
ENSXCOG00000013629	snd1	99	81.473	ENSUMAG00000005960	SND1	92	81.473	Ursus_maritimus
ENSXCOG00000013629	snd1	75	77.355	ENSVPAG00000008302	SND1	66	77.355	Vicugna_pacos
ENSXCOG00000013629	snd1	99	81.473	ENSVVUG00000007226	SND1	92	81.473	Vulpes_vulpes
ENSXCOG00000013629	snd1	98	78.973	ENSXETG00000023043	snd1	96	78.777	Xenopus_tropicalis
ENSXCOG00000013629	snd1	99	96.675	ENSXMAG00000011469	snd1	92	96.675	Xiphophorus_maculatus