EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSXCOG00000014073 (Gene tree)
Gene ID: -
Gene Symbol: rbm12
Alias: zgc:193560|zgc:193570
Full Name: RNA binding motif protein 12
Gene Type: protein_coding
Species: Xiphophorus_couchianus
Status: putative
Strand: Plus strand
Length: 2706 bases
Position: chrKQ557213.1:21619431-21622136
Accession: ZDB-GENE-081022-16
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSXCOP00000018700	RRM_1	PF00076.22	5.9e-36	1	4
ENSXCOP00000018700	RRM_1	PF00076.22	5.9e-36	2	4
ENSXCOP00000018700	RRM_1	PF00076.22	5.9e-36	3	4
ENSXCOP00000018700	RRM_1	PF00076.22	5.9e-36	4	4

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSXCOT00000018935	-	2706	-	ENSXCOP00000018700	901 (aa)	-	-

Gene Model

Click here to download ENSXCOG00000014073's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSXCOG00000014073's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSXCOG00000014073	rbm12	51	30.464	ENSXCOG00000009133	hnrnph1	83	30.070

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSXCOG00000014073	rbm12	99	83.130	ENSACIG00000011053	rbm12	99	84.573	Amphilophus_citrinellus
ENSXCOG00000014073	rbm12	99	81.858	ENSAOCG00000019579	rbm12	99	81.858	Amphiprion_ocellaris
ENSXCOG00000014073	rbm12	72	76.923	ENSCCAG00000035899	-	74	51.181	Cebus_capucinus
ENSXCOG00000014073	rbm12	99	58.414	ENSDARG00000100636	rbm12	99	58.092	Danio_rerio
ENSXCOG00000014073	rbm12	87	61.497	ENSDORG00000000606	-	87	49.163	Dipodomys_ordii
ENSXCOG00000014073	rbm12	57	84.043	ENSEBUG00000016806	rbm12	87	84.043	Eptatretus_burgeri
ENSXCOG00000014073	rbm12	99	78.918	ENSGACG00000004202	rbm12	98	78.366	Gasterosteus_aculeatus
ENSXCOG00000014073	rbm12	99	58.017	ENSIPUG00000014491	rbm12	99	57.566	Ictalurus_punctatus
ENSXCOG00000014073	rbm12	51	70.513	ENSJJAG00000009879	-	77	70.513	Jaculus_jaculus
ENSXCOG00000014073	rbm12	99	57.700	ENSLOCG00000018363	rbm12	99	59.023	Lepisosteus_oculatus
ENSXCOG00000014073	rbm12	64	82.734	ENSMAMG00000001497	rbm12	94	82.734	Mastacembelus_armatus
ENSXCOG00000014073	rbm12	99	79.204	ENSMMOG00000013495	rbm12	99	78.540	Mola_mola
ENSXCOG00000014073	rbm12	50	79.167	ENSMALG00000022679	rbm12	99	80.882	Monopterus_albus
ENSXCOG00000014073	rbm12	60	78.205	MGP_CAROLIEiJ_G0024551	Rbm12	95	47.347	Mus_caroli
ENSXCOG00000014073	rbm12	99	76.264	ENSOMEG00000008238	rbm12	99	76.923	Oryzias_melastigma
ENSXCOG00000014073	rbm12	66	76.923	ENSPSIG00000007369	RBM12	88	76.923	Pelodiscus_sinensis
ENSXCOG00000014073	rbm12	54	96.739	ENSPMGG00000018816	rbm12	96	96.739	Periophthalmus_magnuspinnatus
ENSXCOG00000014073	rbm12	88	85.263	ENSPFOG00000023551	rbm12	97	85.263	Poecilia_formosa