EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSXCOG00000015275 (Gene tree)
Gene ID: -
Gene Symbol: -
Alias: -
Full Name: -
Gene Type: protein_coding
Species: Xiphophorus_couchianus
Status: putative
Strand: Minus strand
Length: 18741 bases
Position: chrKQ557225.1:28052444-28071184
Accession: -
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSXCOP00000020391	UPF1_Zn_bind	PF09416.10	6.4e-74	1	1
ENSXCOP00000020391	ResIII	PF04851.15	3.5e-05	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSXCOT00000020639	-	3261	-	ENSXCOP00000020391	1086 (aa)	-	-

Gene Model

Click here to download ENSXCOG00000015275's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSXCOG00000015275's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSXCOG00000015275	-	90	92.020	ENSXCOG00000005764	-	96	92.121

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSXCOG00000015275	-	96	89.566	ENSG00000005007	UPF1	97	89.658	Homo_sapiens
ENSXCOG00000015275	-	96	91.541	ENSAPOG00000010916	-	97	91.541	Acanthochromis_polyacanthus
ENSXCOG00000015275	-	96	95.166	ENSAPOG00000023773	upf1	97	95.166	Acanthochromis_polyacanthus
ENSXCOG00000015275	-	96	88.981	ENSAMEG00000011474	UPF1	97	88.981	Ailuropoda_melanoleuca
ENSXCOG00000015275	-	96	94.057	ENSACIG00000019949	upf1	97	94.434	Amphilophus_citrinellus
ENSXCOG00000015275	-	90	91.489	ENSACIG00000010985	-	96	91.591	Amphilophus_citrinellus
ENSXCOG00000015275	-	96	94.857	ENSAOCG00000018519	upf1	97	94.857	Amphiprion_ocellaris
ENSXCOG00000015275	-	96	91.635	ENSAOCG00000006352	-	97	91.635	Amphiprion_ocellaris
ENSXCOG00000015275	-	96	94.857	ENSAPEG00000016344	upf1	97	94.857	Amphiprion_percula
ENSXCOG00000015275	-	96	91.635	ENSAPEG00000006292	-	97	91.635	Amphiprion_percula
ENSXCOG00000015275	-	96	92.301	ENSATEG00000017867	upf1	97	92.579	Anabas_testudineus
ENSXCOG00000015275	-	96	91.447	ENSATEG00000016606	-	97	91.447	Anabas_testudineus
ENSXCOG00000015275	-	91	91.257	ENSAPLG00000009175	UPF1	96	91.257	Anas_platyrhynchos
ENSXCOG00000015275	-	92	88.770	ENSANAG00000024107	UPF1	92	88.770	Aotus_nancymaae
ENSXCOG00000015275	-	96	93.962	ENSACLG00000007181	upf1	97	94.340	Astatotilapia_calliptera
ENSXCOG00000015275	-	96	91.447	ENSACLG00000022630	-	97	91.541	Astatotilapia_calliptera
ENSXCOG00000015275	-	96	92.575	ENSAMXG00000042187	upf1	97	92.568	Astyanax_mexicanus
ENSXCOG00000015275	-	96	89.001	ENSBTAG00000020922	UPF1	97	89.093	Bos_taurus
ENSXCOG00000015275	-	81	55.114	WBGene00004880	smg-2	81	55.114	Caenorhabditis_elegans
ENSXCOG00000015275	-	96	88.665	ENSCJAG00000019627	UPF1	97	88.757	Callithrix_jacchus
ENSXCOG00000015275	-	96	88.757	ENSCAFG00000014578	UPF1	97	88.848	Canis_familiaris
ENSXCOG00000015275	-	96	89.658	ENSCAFG00020012347	UPF1	97	89.751	Canis_lupus_dingo
ENSXCOG00000015275	-	96	89.907	ENSCHIG00000011018	UPF1	97	90.000	Capra_hircus
ENSXCOG00000015275	-	91	90.936	ENSTSYG00000008877	UPF1	94	90.936	Carlito_syrichta
ENSXCOG00000015275	-	92	89.961	ENSCAPG00000005758	UPF1	93	89.961	Cavia_aperea
ENSXCOG00000015275	-	96	89.944	ENSCPOG00000025463	UPF1	97	89.944	Cavia_porcellus
ENSXCOG00000015275	-	96	89.649	ENSCCAG00000032175	UPF1	97	89.658	Cebus_capucinus
ENSXCOG00000015275	-	91	91.098	ENSCATG00000040306	UPF1	94	91.098	Cercocebus_atys
ENSXCOG00000015275	-	91	90.936	ENSCLAG00000004037	UPF1	96	90.936	Chinchilla_lanigera
ENSXCOG00000015275	-	96	89.566	ENSCSAG00000005276	UPF1	97	89.658	Chlorocebus_sabaeus
ENSXCOG00000015275	-	96	89.972	ENSCPBG00000012513	UPF1	97	90.251	Chrysemys_picta_bellii
ENSXCOG00000015275	-	78	79.812	ENSCING00000021399	-	99	79.812	Ciona_intestinalis
ENSXCOG00000015275	-	96	73.095	ENSCSAVG00000006533	-	97	73.427	Ciona_savignyi
ENSXCOG00000015275	-	91	90.837	ENSCANG00000029819	UPF1	94	90.837	Colobus_angolensis_palliatus
ENSXCOG00000015275	-	96	89.610	ENSCGRG00001021067	Upf1	97	89.703	Cricetulus_griseus_chok1gshd
ENSXCOG00000015275	-	92	89.951	ENSCGRG00000013480	Upf1	96	89.951	Cricetulus_griseus_crigri
ENSXCOG00000015275	-	96	89.639	ENSCSEG00000017239	upf1	97	89.639	Cynoglossus_semilaevis
ENSXCOG00000015275	-	96	91.423	ENSCSEG00000016159	-	97	91.423	Cynoglossus_semilaevis
ENSXCOG00000015275	-	96	90.883	ENSCVAG00000010561	upf1	97	90.977	Cyprinodon_variegatus
ENSXCOG00000015275	-	96	92.763	ENSDARG00000016302	upf1	97	92.756	Danio_rerio
ENSXCOG00000015275	-	91	88.386	ENSDORG00000009984	Upf1	92	88.386	Dipodomys_ordii
ENSXCOG00000015275	-	86	72.572	FBgn0030354	Upf1	81	71.443	Drosophila_melanogaster
ENSXCOG00000015275	-	55	86.755	ENSEBUG00000010069	upf1	96	86.755	Eptatretus_burgeri
ENSXCOG00000015275	-	96	89.907	ENSEASG00005006549	UPF1	97	90.000	Equus_asinus_asinus
ENSXCOG00000015275	-	96	89.907	ENSECAG00000010639	UPF1	97	90.000	Equus_caballus
ENSXCOG00000015275	-	96	91.028	ENSELUG00000012916	-	97	91.121	Esox_lucius
ENSXCOG00000015275	-	96	91.667	ENSELUG00000020917	upf1	97	92.142	Esox_lucius
ENSXCOG00000015275	-	96	88.757	ENSFCAG00000009757	UPF1	97	88.848	Felis_catus
ENSXCOG00000015275	-	91	91.691	ENSFALG00000009312	UPF1	93	91.691	Ficedula_albicollis
ENSXCOG00000015275	-	93	89.642	ENSFDAG00000014816	UPF1	96	90.837	Fukomys_damarensis
ENSXCOG00000015275	-	83	92.768	ENSFHEG00000016276	-	92	92.768	Fundulus_heteroclitus
ENSXCOG00000015275	-	96	92.458	ENSFHEG00000006428	upf1	97	92.458	Fundulus_heteroclitus
ENSXCOG00000015275	-	96	90.663	ENSGMOG00000007541	upf1	97	90.756	Gadus_morhua
ENSXCOG00000015275	-	96	89.824	ENSGALG00000003220	UPF1	97	90.102	Gallus_gallus
ENSXCOG00000015275	-	96	91.415	ENSGAFG00000004831	upf1	97	91.509	Gambusia_affinis
ENSXCOG00000015275	-	64	97.695	ENSGAFG00000015443	-	85	97.695	Gambusia_affinis
ENSXCOG00000015275	-	96	90.485	ENSGAGG00000022217	UPF1	97	90.858	Gopherus_agassizii
ENSXCOG00000015275	-	91	91.833	ENSGGOG00000002608	UPF1	95	91.833	Gorilla_gorilla
ENSXCOG00000015275	-	87	95.122	ENSHBUG00000014694	upf1	96	95.122	Haplochromis_burtoni
ENSXCOG00000015275	-	84	94.748	ENSHBUG00000008939	upf1	91	94.748	Haplochromis_burtoni
ENSXCOG00000015275	-	96	88.940	ENSHGLG00000010900	UPF1	97	88.940	Heterocephalus_glaber_female
ENSXCOG00000015275	-	91	89.360	ENSHGLG00100005904	UPF1	93	89.261	Heterocephalus_glaber_male
ENSXCOG00000015275	-	96	91.345	ENSHCOG00000008918	upf1	97	91.533	Hippocampus_comes
ENSXCOG00000015275	-	96	92.763	ENSIPUG00000005108	UPF1	97	92.756	Ictalurus_punctatus
ENSXCOG00000015275	-	96	89.566	ENSSTOG00000009196	UPF1	97	89.658	Ictidomys_tridecemlineatus
ENSXCOG00000015275	-	96	88.674	ENSJJAG00000023151	Upf1	97	88.858	Jaculus_jaculus
ENSXCOG00000015275	-	96	91.165	ENSKMAG00000004962	upf1	97	91.165	Kryptolebias_marmoratus
ENSXCOG00000015275	-	96	92.286	ENSLBEG00000014862	upf1	97	92.658	Labrus_bergylta
ENSXCOG00000015275	-	96	91.080	ENSLBEG00000027848	-	97	91.174	Labrus_bergylta
ENSXCOG00000015275	-	59	91.515	ENSLACG00000008482	UPF1	95	91.515	Latimeria_chalumnae
ENSXCOG00000015275	-	96	92.293	ENSLOCG00000002072	upf1	97	92.293	Lepisosteus_oculatus
ENSXCOG00000015275	-	96	88.645	ENSLAFG00000014963	UPF1	97	88.736	Loxodonta_africana
ENSXCOG00000015275	-	96	89.319	ENSMFAG00000037748	UPF1	97	89.411	Macaca_fascicularis
ENSXCOG00000015275	-	96	89.073	ENSMMUG00000023286	UPF1	97	89.164	Macaca_mulatta
ENSXCOG00000015275	-	96	89.319	ENSMNEG00000000046	UPF1	97	89.411	Macaca_nemestrina
ENSXCOG00000015275	-	91	90.837	ENSMLEG00000028404	UPF1	96	90.837	Mandrillus_leucophaeus
ENSXCOG00000015275	-	96	91.455	ENSMAMG00000006231	-	97	91.455	Mastacembelus_armatus
ENSXCOG00000015275	-	96	92.301	ENSMAMG00000006229	upf1	97	92.672	Mastacembelus_armatus
ENSXCOG00000015275	-	96	91.447	ENSMZEG00005016386	-	97	91.541	Maylandia_zebra
ENSXCOG00000015275	-	96	93.197	ENSMZEG00005003489	upf1	97	93.197	Maylandia_zebra
ENSXCOG00000015275	-	91	90.748	ENSMGAG00000004745	UPF1	96	90.748	Meleagris_gallopavo
ENSXCOG00000015275	-	92	89.168	ENSMAUG00000011398	Upf1	93	89.168	Mesocricetus_auratus
ENSXCOG00000015275	-	96	89.658	ENSMICG00000001659	UPF1	97	89.751	Microcebus_murinus
ENSXCOG00000015275	-	96	88.705	ENSMOCG00000005699	Upf1	97	88.705	Microtus_ochrogaster
ENSXCOG00000015275	-	96	93.928	ENSMMOG00000007881	upf1	97	93.928	Mola_mola
ENSXCOG00000015275	-	91	88.988	ENSMMOG00000007537	-	96	88.988	Mola_mola
ENSXCOG00000015275	-	96	88.696	ENSMODG00000003689	UPF1	97	88.788	Monodelphis_domestica
ENSXCOG00000015275	-	96	94.460	ENSMALG00000000144	upf1	97	94.571	Monopterus_albus
ENSXCOG00000015275	-	96	89.888	ENSMALG00000018100	-	97	89.888	Monopterus_albus
ENSXCOG00000015275	-	96	89.415	MGP_CAROLIEiJ_G0031142	Upf1	97	89.508	Mus_caroli
ENSXCOG00000015275	-	96	89.415	ENSMUSG00000058301	Upf1	97	89.508	Mus_musculus
ENSXCOG00000015275	-	96	89.415	MGP_PahariEiJ_G0021607	Upf1	97	89.508	Mus_pahari
ENSXCOG00000015275	-	96	89.415	MGP_SPRETEiJ_G0032260	Upf1	97	89.508	Mus_spretus
ENSXCOG00000015275	-	96	89.658	ENSMPUG00000015516	UPF1	97	89.751	Mustela_putorius_furo
ENSXCOG00000015275	-	96	89.527	ENSMLUG00000012122	UPF1	96	89.620	Myotis_lucifugus
ENSXCOG00000015275	-	96	88.370	ENSNGAG00000024107	Upf1	97	88.462	Nannospalax_galili
ENSXCOG00000015275	-	96	91.792	ENSNBRG00000000670	upf1	97	92.170	Neolamprologus_brichardi
ENSXCOG00000015275	-	96	87.964	ENSNBRG00000022069	-	96	91.028	Neolamprologus_brichardi
ENSXCOG00000015275	-	91	84.926	ENSNLEG00000006062	UPF1	96	84.926	Nomascus_leucogenys
ENSXCOG00000015275	-	79	84.810	ENSMEUG00000014146	-	80	84.599	Notamacropus_eugenii
ENSXCOG00000015275	-	91	85.104	ENSOPRG00000014018	UPF1	96	85.104	Ochotona_princeps
ENSXCOG00000015275	-	96	89.851	ENSODEG00000012426	UPF1	97	89.851	Octodon_degus
ENSXCOG00000015275	-	96	93.383	ENSONIG00000010452	upf1	97	93.383	Oreochromis_niloticus
ENSXCOG00000015275	-	96	91.447	ENSONIG00000012729	-	97	91.541	Oreochromis_niloticus
ENSXCOG00000015275	-	96	89.276	ENSOANG00000004568	UPF1	97	89.368	Ornithorhynchus_anatinus
ENSXCOG00000015275	-	96	90.977	ENSORLG00000008453	upf1	97	90.977	Oryzias_latipes
ENSXCOG00000015275	-	96	90.892	ENSORLG00020014758	upf1	97	90.892	Oryzias_latipes_hni
ENSXCOG00000015275	-	96	90.892	ENSORLG00015010165	upf1	97	90.892	Oryzias_latipes_hsok
ENSXCOG00000015275	-	96	91.259	ENSOMEG00000003665	upf1	97	91.259	Oryzias_melastigma
ENSXCOG00000015275	-	96	89.658	ENSOGAG00000012866	UPF1	97	89.751	Otolemur_garnettii
ENSXCOG00000015275	-	96	88.132	ENSOARG00000010739	UPF1	100	88.132	Ovis_aries
ENSXCOG00000015275	-	91	90.837	ENSPPAG00000043884	UPF1	93	90.837	Pan_paniscus
ENSXCOG00000015275	-	96	88.757	ENSPPRG00000023470	UPF1	97	88.848	Panthera_pardus
ENSXCOG00000015275	-	91	89.662	ENSPTIG00000010159	UPF1	96	89.662	Panthera_tigris_altaica
ENSXCOG00000015275	-	96	89.319	ENSPTRG00000010721	UPF1	97	89.411	Pan_troglodytes
ENSXCOG00000015275	-	96	89.319	ENSPANG00000008847	UPF1	97	89.411	Papio_anubis
ENSXCOG00000015275	-	92	94.589	ENSPKIG00000006069	upf1	96	94.589	Paramormyrops_kingsleyae
ENSXCOG00000015275	-	66	90.535	ENSPSIG00000009491	UPF1	95	90.535	Pelodiscus_sinensis
ENSXCOG00000015275	-	96	91.455	ENSPMGG00000017327	upf1	97	91.643	Periophthalmus_magnuspinnatus
ENSXCOG00000015275	-	96	88.705	ENSPEMG00000001085	Upf1	97	88.797	Peromyscus_maniculatus_bairdii
ENSXCOG00000015275	-	96	86.717	ENSPMAG00000001206	upf1	97	86.717	Petromyzon_marinus
ENSXCOG00000015275	-	96	90.111	ENSPCIG00000006156	UPF1	97	90.111	Phascolarctos_cinereus
ENSXCOG00000015275	-	96	95.331	ENSPLAG00000018155	-	97	95.331	Poecilia_latipinna
ENSXCOG00000015275	-	96	91.415	ENSPLAG00000016232	-	97	91.509	Poecilia_latipinna
ENSXCOG00000015275	-	96	91.329	ENSPMEG00000016319	-	97	91.423	Poecilia_mexicana
ENSXCOG00000015275	-	96	96.503	ENSPMEG00000011443	-	97	96.503	Poecilia_mexicana
ENSXCOG00000015275	-	96	95.247	ENSPREG00000009940	upf1	97	95.247	Poecilia_reticulata
ENSXCOG00000015275	-	96	91.321	ENSPREG00000011247	-	97	91.509	Poecilia_reticulata
ENSXCOG00000015275	-	96	83.868	ENSPPYG00000009752	UPF1	97	83.960	Pongo_abelii
ENSXCOG00000015275	-	71	98.653	ENSPCAG00000012962	UPF1	72	98.653	Procavia_capensis
ENSXCOG00000015275	-	96	89.246	ENSPCOG00000023813	UPF1	97	89.338	Propithecus_coquereli
ENSXCOG00000015275	-	65	91.758	ENSPVAG00000003183	UPF1	65	91.896	Pteropus_vampyrus
ENSXCOG00000015275	-	96	91.447	ENSPNYG00000016731	-	97	91.541	Pundamilia_nyererei
ENSXCOG00000015275	-	96	93.197	ENSPNYG00000003694	upf1	97	93.197	Pundamilia_nyererei
ENSXCOG00000015275	-	96	92.669	ENSPNAG00000025614	upf1	97	92.662	Pygocentrus_nattereri
ENSXCOG00000015275	-	96	89.518	ENSRNOG00000020134	Upf1	97	89.610	Rattus_norvegicus
ENSXCOG00000015275	-	91	88.571	ENSRBIG00000013894	UPF1	94	92.132	Rhinopithecus_bieti
ENSXCOG00000015275	-	91	90.837	ENSRROG00000040935	UPF1	94	92.132	Rhinopithecus_roxellana
ENSXCOG00000015275	-	75	56.793	YMR080C	NAM7	84	56.793	Saccharomyces_cerevisiae
ENSXCOG00000015275	-	91	91.098	ENSSBOG00000023632	UPF1	92	91.098	Saimiri_boliviensis_boliviensis
ENSXCOG00000015275	-	91	91.052	ENSSHAG00000010499	UPF1	96	91.052	Sarcophilus_harrisii
ENSXCOG00000015275	-	96	91.917	ENSSFOG00015021095	upf1	97	92.207	Scleropages_formosus
ENSXCOG00000015275	-	96	91.357	ENSSMAG00000005055	upf1	97	91.636	Scophthalmus_maximus
ENSXCOG00000015275	-	96	91.549	ENSSMAG00000021018	-	97	91.549	Scophthalmus_maximus
ENSXCOG00000015275	-	96	91.455	ENSSDUG00000009629	-	97	91.455	Seriola_dumerili
ENSXCOG00000015275	-	96	92.579	ENSSDUG00000013320	upf1	97	92.950	Seriola_dumerili
ENSXCOG00000015275	-	96	91.455	ENSSLDG00000006878	-	97	91.455	Seriola_lalandi_dorsalis
ENSXCOG00000015275	-	96	93.446	ENSSLDG00000020868	upf1	97	93.820	Seriola_lalandi_dorsalis
ENSXCOG00000015275	-	96	90.223	ENSSPUG00000010538	UPF1	97	90.689	Sphenodon_punctatus
ENSXCOG00000015275	-	96	91.533	ENSSPAG00000011521	-	97	91.533	Stegastes_partitus
ENSXCOG00000015275	-	96	92.068	ENSSPAG00000000003	upf1	97	92.257	Stegastes_partitus
ENSXCOG00000015275	-	96	89.815	ENSSSCG00000039301	UPF1	96	91.750	Sus_scrofa
ENSXCOG00000015275	-	83	85.745	ENSTGUG00000001057	UPF1	100	89.793	Taeniopygia_guttata
ENSXCOG00000015275	-	96	94.370	ENSTRUG00000000150	upf1	97	94.370	Takifugu_rubripes
ENSXCOG00000015275	-	96	90.602	ENSTRUG00000005131	-	97	90.772	Takifugu_rubripes
ENSXCOG00000015275	-	96	86.111	ENSTTRG00000011544	UPF1	97	86.111	Tursiops_truncatus
ENSXCOG00000015275	-	96	89.658	ENSUAMG00000007093	UPF1	97	89.751	Ursus_americanus
ENSXCOG00000015275	-	91	91.849	ENSUMAG00000006652	UPF1	96	92.780	Ursus_maritimus
ENSXCOG00000015275	-	96	89.658	ENSVVUG00000007797	UPF1	97	89.751	Vulpes_vulpes
ENSXCOG00000015275	-	96	76.958	ENSXETG00000013602	upf1	97	76.958	Xenopus_tropicalis
ENSXCOG00000015275	-	96	91.329	ENSXMAG00000002540	-	97	91.423	Xiphophorus_maculatus
ENSXCOG00000015275	-	96	99.522	ENSXMAG00000001703	-	97	99.522	Xiphophorus_maculatus