EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: ENSXCOG00000015653 (Gene tree)
Gene ID: -
Gene Symbol: sf3a1
Alias: si:dz150f13.2|wu:fc38e01|wu:fc50a11|wu:fj37c05
Full Name: splicing factor 3a%2C subunit 1
Gene Type: protein_coding
Species: Xiphophorus_couchianus
Status: putative
Strand: Minus strand
Length: 5774 bases
Position: chrKQ557225.1:29976571-29982344
Accession: ZDB-GENE-030616-156
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSXCOP00000020910	PRP21_like_P	PF12230.8	5.4e-53	1	1
ENSXCOP00000020910	Surp	PF01805.20	1.1e-45	1	2
ENSXCOP00000020910	Surp	PF01805.20	1.1e-45	2	2

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSXCOT00000021167	-	2355	-	ENSXCOP00000020910	784 (aa)	-	-

Gene Model

Click here to download ENSXCOG00000015653's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSXCOG00000015653's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSXCOG00000015653	sf3a1	97	84.706	ENSG00000099995	SF3A1	100	83.019	Homo_sapiens
ENSXCOG00000015653	sf3a1	100	94.663	ENSAPOG00000020465	sf3a1	100	94.663	Acanthochromis_polyacanthus
ENSXCOG00000015653	sf3a1	97	84.575	ENSAMEG00000007737	SF3A1	100	82.685	Ailuropoda_melanoleuca
ENSXCOG00000015653	sf3a1	100	94.409	ENSACIG00000020672	sf3a1	100	94.409	Amphilophus_citrinellus
ENSXCOG00000015653	sf3a1	100	94.536	ENSAOCG00000003060	sf3a1	100	94.536	Amphiprion_ocellaris
ENSXCOG00000015653	sf3a1	100	94.663	ENSAPEG00000010735	sf3a1	100	94.663	Amphiprion_percula
ENSXCOG00000015653	sf3a1	97	93.987	ENSATEG00000021201	sf3a1	96	93.987	Anabas_testudineus
ENSXCOG00000015653	sf3a1	96	83.377	ENSAPLG00000009057	SF3A1	100	83.163	Anas_platyrhynchos
ENSXCOG00000015653	sf3a1	100	80.247	ENSACAG00000009415	SF3A1	100	80.000	Anolis_carolinensis
ENSXCOG00000015653	sf3a1	99	83.142	ENSANAG00000032045	SF3A1	100	82.522	Aotus_nancymaae
ENSXCOG00000015653	sf3a1	100	92.630	ENSACLG00000012622	sf3a1	100	93.520	Astatotilapia_calliptera
ENSXCOG00000015653	sf3a1	99	86.641	ENSAMXG00000005382	sf3a1	99	87.150	Astyanax_mexicanus
ENSXCOG00000015653	sf3a1	97	84.575	ENSBTAG00000003390	SF3A1	100	82.893	Bos_taurus
ENSXCOG00000015653	sf3a1	82	44.129	WBGene00004188	prp-21	90	43.585	Caenorhabditis_elegans
ENSXCOG00000015653	sf3a1	99	83.014	ENSCJAG00000010370	SF3A1	100	82.767	Callithrix_jacchus
ENSXCOG00000015653	sf3a1	97	84.575	ENSCAFG00000012559	SF3A1	100	82.893	Canis_familiaris
ENSXCOG00000015653	sf3a1	97	84.575	ENSCAFG00020000838	SF3A1	100	82.893	Canis_lupus_dingo
ENSXCOG00000015653	sf3a1	97	84.706	ENSCHIG00000018642	SF3A1	100	83.019	Capra_hircus
ENSXCOG00000015653	sf3a1	97	84.706	ENSTSYG00000004739	SF3A1	100	83.019	Carlito_syrichta
ENSXCOG00000015653	sf3a1	94	67.968	ENSCAPG00000015414	SF3A1	97	68.456	Cavia_aperea
ENSXCOG00000015653	sf3a1	99	83.077	ENSCPOG00000014589	SF3A1	100	82.767	Cavia_porcellus
ENSXCOG00000015653	sf3a1	99	83.142	ENSCCAG00000032006	SF3A1	100	82.522	Cebus_capucinus
ENSXCOG00000015653	sf3a1	97	84.706	ENSCATG00000029241	SF3A1	100	83.019	Cercocebus_atys
ENSXCOG00000015653	sf3a1	97	83.979	ENSCLAG00000006508	SF3A1	100	83.333	Chinchilla_lanigera
ENSXCOG00000015653	sf3a1	99	83.269	ENSCSAG00000009470	SF3A1	100	83.019	Chlorocebus_sabaeus
ENSXCOG00000015653	sf3a1	57	90.476	ENSCHOG00000005201	SF3A1	64	90.476	Choloepus_hoffmanni
ENSXCOG00000015653	sf3a1	100	80.556	ENSCPBG00000007595	SF3A1	100	82.219	Chrysemys_picta_bellii
ENSXCOG00000015653	sf3a1	97	52.551	ENSCING00000008526	-	98	51.918	Ciona_intestinalis
ENSXCOG00000015653	sf3a1	93	63.158	ENSCSAVG00000005608	-	100	50.641	Ciona_savignyi
ENSXCOG00000015653	sf3a1	99	83.269	ENSCANG00000033564	SF3A1	100	83.019	Colobus_angolensis_palliatus
ENSXCOG00000015653	sf3a1	97	84.737	ENSCGRG00001008933	Sf3a1	100	83.019	Cricetulus_griseus_chok1gshd
ENSXCOG00000015653	sf3a1	97	84.737	ENSCGRG00000006127	Sf3a1	100	83.019	Cricetulus_griseus_crigri
ENSXCOG00000015653	sf3a1	100	89.467	ENSCSEG00000010792	sf3a1	100	89.340	Cynoglossus_semilaevis
ENSXCOG00000015653	sf3a1	100	95.026	ENSCVAG00000004560	sf3a1	100	95.026	Cyprinodon_variegatus
ENSXCOG00000015653	sf3a1	100	85.678	ENSDARG00000041887	sf3a1	100	88.701	Danio_rerio
ENSXCOG00000015653	sf3a1	97	84.856	ENSDNOG00000010629	SF3A1	99	83.122	Dasypus_novemcinctus
ENSXCOG00000015653	sf3a1	97	84.575	ENSDORG00000005613	Sf3a1	100	82.893	Dipodomys_ordii
ENSXCOG00000015653	sf3a1	84	61.017	FBgn0266917	Sf3a1	99	49.758	Drosophila_melanogaster
ENSXCOG00000015653	sf3a1	85	82.609	ENSETEG00000017194	SF3A1	95	83.408	Echinops_telfairi
ENSXCOG00000015653	sf3a1	97	67.629	ENSEBUG00000001285	sf3a1	95	69.134	Eptatretus_burgeri
ENSXCOG00000015653	sf3a1	97	84.575	ENSEASG00005010254	SF3A1	100	83.333	Equus_asinus_asinus
ENSXCOG00000015653	sf3a1	97	84.575	ENSECAG00000023962	SF3A1	100	83.333	Equus_caballus
ENSXCOG00000015653	sf3a1	74	88.525	ENSEEUG00000003159	SF3A1	82	88.525	Erinaceus_europaeus
ENSXCOG00000015653	sf3a1	100	85.932	ENSELUG00000022578	sf3a1	100	86.819	Esox_lucius
ENSXCOG00000015653	sf3a1	97	84.314	ENSFCAG00000011932	SF3A1	100	82.642	Felis_catus
ENSXCOG00000015653	sf3a1	96	81.878	ENSFALG00000006944	SF3A1	100	81.864	Ficedula_albicollis
ENSXCOG00000015653	sf3a1	97	84.444	ENSFDAG00000009560	SF3A1	100	82.767	Fukomys_damarensis
ENSXCOG00000015653	sf3a1	100	96.056	ENSFHEG00000010866	sf3a1	100	96.056	Fundulus_heteroclitus
ENSXCOG00000015653	sf3a1	100	87.134	ENSGMOG00000016024	sf3a1	100	85.372	Gadus_morhua
ENSXCOG00000015653	sf3a1	96	83.487	ENSGALG00000007937	SF3A1	100	82.058	Gallus_gallus
ENSXCOG00000015653	sf3a1	100	98.342	ENSGAFG00000009111	sf3a1	100	98.342	Gambusia_affinis
ENSXCOG00000015653	sf3a1	100	88.734	ENSGACG00000011893	sf3a1	100	88.354	Gasterosteus_aculeatus
ENSXCOG00000015653	sf3a1	96	80.237	ENSGAGG00000000762	SF3A1	99	81.711	Gopherus_agassizii
ENSXCOG00000015653	sf3a1	97	84.706	ENSGGOG00000012631	SF3A1	100	83.019	Gorilla_gorilla
ENSXCOG00000015653	sf3a1	100	94.028	ENSHBUG00000015795	sf3a1	100	93.647	Haplochromis_burtoni
ENSXCOG00000015653	sf3a1	99	83.077	ENSHGLG00000007907	SF3A1	100	82.767	Heterocephalus_glaber_female
ENSXCOG00000015653	sf3a1	99	83.077	ENSHGLG00100013799	SF3A1	100	82.767	Heterocephalus_glaber_male
ENSXCOG00000015653	sf3a1	100	88.677	ENSHCOG00000015423	sf3a1	100	88.422	Hippocampus_comes
ENSXCOG00000015653	sf3a1	98	84.238	ENSIPUG00000002470	sf3a1	99	85.013	Ictalurus_punctatus
ENSXCOG00000015653	sf3a1	97	84.444	ENSSTOG00000013892	SF3A1	100	83.270	Ictidomys_tridecemlineatus
ENSXCOG00000015653	sf3a1	97	84.444	ENSJJAG00000022566	Sf3a1	100	83.040	Jaculus_jaculus
ENSXCOG00000015653	sf3a1	100	93.266	ENSKMAG00000002400	sf3a1	100	93.266	Kryptolebias_marmoratus
ENSXCOG00000015653	sf3a1	100	91.847	ENSLBEG00000022974	sf3a1	100	91.465	Labrus_bergylta
ENSXCOG00000015653	sf3a1	100	82.995	ENSLACG00000003565	SF3A1	100	83.165	Latimeria_chalumnae
ENSXCOG00000015653	sf3a1	100	86.094	ENSLOCG00000008251	sf3a1	99	86.852	Lepisosteus_oculatus
ENSXCOG00000015653	sf3a1	98	55.341	ENSLAFG00000026032	-	99	53.585	Loxodonta_africana
ENSXCOG00000015653	sf3a1	97	84.837	ENSLAFG00000000448	SF3A1	100	83.145	Loxodonta_africana
ENSXCOG00000015653	sf3a1	99	83.142	ENSMFAG00000031979	SF3A1	100	82.893	Macaca_fascicularis
ENSXCOG00000015653	sf3a1	99	83.142	ENSMMUG00000005547	SF3A1	100	82.893	Macaca_mulatta
ENSXCOG00000015653	sf3a1	99	83.269	ENSMNEG00000037229	SF3A1	100	83.019	Macaca_nemestrina
ENSXCOG00000015653	sf3a1	99	83.269	ENSMLEG00000041908	SF3A1	100	83.019	Mandrillus_leucophaeus
ENSXCOG00000015653	sf3a1	98	93.135	ENSMAMG00000006460	sf3a1	97	93.135	Mastacembelus_armatus
ENSXCOG00000015653	sf3a1	100	92.630	ENSMZEG00005009633	sf3a1	100	93.520	Maylandia_zebra
ENSXCOG00000015653	sf3a1	96	83.487	ENSMGAG00000001330	SF3A1	99	83.917	Meleagris_gallopavo
ENSXCOG00000015653	sf3a1	93	80.654	ENSMAUG00000020317	Sf3a1	100	77.399	Mesocricetus_auratus
ENSXCOG00000015653	sf3a1	97	84.706	ENSMICG00000010038	SF3A1	100	83.019	Microcebus_murinus
ENSXCOG00000015653	sf3a1	97	84.183	ENSMOCG00000008438	Sf3a1	100	83.145	Microtus_ochrogaster
ENSXCOG00000015653	sf3a1	100	88.408	ENSMMOG00000015588	sf3a1	99	89.172	Mola_mola
ENSXCOG00000015653	sf3a1	97	83.399	ENSMODG00000009270	SF3A1	100	82.620	Monodelphis_domestica
ENSXCOG00000015653	sf3a1	100	92.640	ENSMALG00000000148	sf3a1	100	93.020	Monopterus_albus
ENSXCOG00000015653	sf3a1	97	84.737	MGP_CAROLIEiJ_G0016029	Sf3a1	99	82.955	Mus_caroli
ENSXCOG00000015653	sf3a1	97	84.737	ENSMUSG00000002129	Sf3a1	99	82.955	Mus_musculus
ENSXCOG00000015653	sf3a1	97	84.605	MGP_PahariEiJ_G0016862	Sf3a1	99	82.955	Mus_pahari
ENSXCOG00000015653	sf3a1	97	84.737	MGP_SPRETEiJ_G0016870	Sf3a1	99	82.955	Mus_spretus
ENSXCOG00000015653	sf3a1	97	84.314	ENSMPUG00000013144	SF3A1	100	83.019	Mustela_putorius_furo
ENSXCOG00000015653	sf3a1	99	83.055	ENSMLUG00000002139	SF3A1	100	82.767	Myotis_lucifugus
ENSXCOG00000015653	sf3a1	97	84.444	ENSNGAG00000016977	Sf3a1	100	83.208	Nannospalax_galili
ENSXCOG00000015653	sf3a1	100	93.401	ENSNBRG00000016642	sf3a1	100	93.020	Neolamprologus_brichardi
ENSXCOG00000015653	sf3a1	99	83.269	ENSNLEG00000003686	SF3A1	100	83.019	Nomascus_leucogenys
ENSXCOG00000015653	sf3a1	93	75.410	ENSMEUG00000008741	SF3A1	100	74.507	Notamacropus_eugenii
ENSXCOG00000015653	sf3a1	97	85.098	ENSOPRG00000016636	SF3A1	100	83.145	Ochotona_princeps
ENSXCOG00000015653	sf3a1	97	84.444	ENSODEG00000002571	SF3A1	100	83.249	Octodon_degus
ENSXCOG00000015653	sf3a1	100	94.028	ENSONIG00000010848	sf3a1	100	93.647	Oreochromis_niloticus
ENSXCOG00000015653	sf3a1	97	84.575	ENSOCUG00000007633	SF3A1	100	82.893	Oryctolagus_cuniculus
ENSXCOG00000015653	sf3a1	96	92.706	ENSORLG00000013050	sf3a1	99	92.440	Oryzias_latipes
ENSXCOG00000015653	sf3a1	99	90.026	ENSORLG00020003236	sf3a1	97	90.335	Oryzias_latipes_hni
ENSXCOG00000015653	sf3a1	100	92.376	ENSORLG00015017411	sf3a1	100	92.122	Oryzias_latipes_hsok
ENSXCOG00000015653	sf3a1	100	92.884	ENSOMEG00000013362	sf3a1	100	92.630	Oryzias_melastigma
ENSXCOG00000015653	sf3a1	97	84.706	ENSOGAG00000012931	SF3A1	100	83.019	Otolemur_garnettii
ENSXCOG00000015653	sf3a1	97	83.399	ENSOARG00000006849	SF3A1	100	81.761	Ovis_aries
ENSXCOG00000015653	sf3a1	97	83.922	ENSPPAG00000041790	SF3A1	100	82.138	Pan_paniscus
ENSXCOG00000015653	sf3a1	97	84.314	ENSPPRG00000004391	SF3A1	100	82.642	Panthera_pardus
ENSXCOG00000015653	sf3a1	97	84.183	ENSPTIG00000000844	SF3A1	99	84.706	Panthera_tigris_altaica
ENSXCOG00000015653	sf3a1	97	84.706	ENSPTRG00000014240	SF3A1	100	83.019	Pan_troglodytes
ENSXCOG00000015653	sf3a1	99	83.269	ENSPANG00000020772	SF3A1	100	83.019	Papio_anubis
ENSXCOG00000015653	sf3a1	79	89.011	ENSPSIG00000012803	SF3A1	99	89.011	Pelodiscus_sinensis
ENSXCOG00000015653	sf3a1	97	88.598	ENSPMGG00000023096	sf3a1	100	90.564	Periophthalmus_magnuspinnatus
ENSXCOG00000015653	sf3a1	97	84.474	ENSPEMG00000009494	Sf3a1	100	83.145	Peromyscus_maniculatus_bairdii
ENSXCOG00000015653	sf3a1	69	77.555	ENSPMAG00000007139	-	93	77.920	Petromyzon_marinus
ENSXCOG00000015653	sf3a1	97	84.052	ENSPCIG00000022692	SF3A1	100	82.620	Phascolarctos_cinereus
ENSXCOG00000015653	sf3a1	100	87.150	ENSPFOG00000016768	sf3a1	100	87.183	Poecilia_formosa
ENSXCOG00000015653	sf3a1	100	98.092	ENSPLAG00000017268	sf3a1	100	98.092	Poecilia_latipinna
ENSXCOG00000015653	sf3a1	96	98.182	ENSPMEG00000019811	sf3a1	100	98.182	Poecilia_mexicana
ENSXCOG00000015653	sf3a1	100	98.219	ENSPREG00000010347	sf3a1	100	98.219	Poecilia_reticulata
ENSXCOG00000015653	sf3a1	99	83.269	ENSPPYG00000011707	SF3A1	100	83.019	Pongo_abelii
ENSXCOG00000015653	sf3a1	58	83.884	ENSPCAG00000003266	SF3A1	57	83.884	Procavia_capensis
ENSXCOG00000015653	sf3a1	97	84.444	ENSPCOG00000026630	SF3A1	100	82.767	Propithecus_coquereli
ENSXCOG00000015653	sf3a1	95	84.337	ENSPVAG00000017719	SF3A1	94	84.471	Pteropus_vampyrus
ENSXCOG00000015653	sf3a1	100	93.901	ENSPNYG00000018706	sf3a1	100	93.520	Pundamilia_nyererei
ENSXCOG00000015653	sf3a1	99	86.896	ENSPNAG00000003721	sf3a1	99	86.641	Pygocentrus_nattereri
ENSXCOG00000015653	sf3a1	98	83.441	ENSRNOG00000005218	Sf3a1	99	82.719	Rattus_norvegicus
ENSXCOG00000015653	sf3a1	99	83.142	ENSRBIG00000032167	SF3A1	100	82.893	Rhinopithecus_bieti
ENSXCOG00000015653	sf3a1	99	83.142	ENSRROG00000044908	SF3A1	100	82.893	Rhinopithecus_roxellana
ENSXCOG00000015653	sf3a1	93	84.490	ENSSBOG00000021960	SF3A1	98	85.030	Saimiri_boliviensis_boliviensis
ENSXCOG00000015653	sf3a1	97	80.261	ENSSHAG00000003666	SF3A1	97	81.830	Sarcophilus_harrisii
ENSXCOG00000015653	sf3a1	100	88.622	ENSSFOG00015004579	sf3a1	100	89.760	Scleropages_formosus
ENSXCOG00000015653	sf3a1	100	90.191	ENSSMAG00000004275	sf3a1	100	89.936	Scophthalmus_maximus
ENSXCOG00000015653	sf3a1	100	93.011	ENSSDUG00000022219	sf3a1	100	92.757	Seriola_dumerili
ENSXCOG00000015653	sf3a1	100	93.011	ENSSLDG00000012642	sf3a1	100	92.757	Seriola_lalandi_dorsalis
ENSXCOG00000015653	sf3a1	97	81.438	ENSSARG00000005960	SF3A1	99	81.961	Sorex_araneus
ENSXCOG00000015653	sf3a1	96	82.315	ENSSPUG00000018863	SF3A1	100	82.338	Sphenodon_punctatus
ENSXCOG00000015653	sf3a1	100	93.774	ENSSPAG00000011856	sf3a1	100	93.393	Stegastes_partitus
ENSXCOG00000015653	sf3a1	97	84.314	ENSSSCG00000010002	SF3A1	100	82.893	Sus_scrofa
ENSXCOG00000015653	sf3a1	96	83.267	ENSTGUG00000010547	SF3A1	99	84.156	Taeniopygia_guttata
ENSXCOG00000015653	sf3a1	100	89.172	ENSTRUG00000006118	sf3a1	100	89.172	Takifugu_rubripes
ENSXCOG00000015653	sf3a1	56	85.874	ENSTNIG00000005713	sf3a1	89	87.611	Tetraodon_nigroviridis
ENSXCOG00000015653	sf3a1	99	76.637	ENSTBEG00000012771	SF3A1	100	76.478	Tupaia_belangeri
ENSXCOG00000015653	sf3a1	97	84.073	ENSTTRG00000001535	SF3A1	100	82.789	Tursiops_truncatus
ENSXCOG00000015653	sf3a1	99	81.369	ENSUAMG00000006750	SF3A1	98	82.202	Ursus_americanus
ENSXCOG00000015653	sf3a1	100	82.331	ENSUMAG00000016665	SF3A1	100	82.456	Ursus_maritimus
ENSXCOG00000015653	sf3a1	97	84.575	ENSVVUG00000003075	SF3A1	100	82.893	Vulpes_vulpes
ENSXCOG00000015653	sf3a1	100	77.010	ENSXETG00000016144	sf3a1	96	83.468	Xenopus_tropicalis
ENSXCOG00000015653	sf3a1	100	99.745	ENSXMAG00000002753	sf3a1	100	99.745	Xiphophorus_maculatus