EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSXCOG00000015682 (Gene tree)
Gene ID: -
Gene Symbol: -
Alias: -
Full Name: -
Gene Type: protein_coding
Species: Xiphophorus_couchianus
Status: putative
Strand: Plus strand
Length: 10838 bases
Position: chrKQ557225.1:30363002-30373839
Accession: -
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSXCOP00000020948	RRM_1	PF00076.22	1.4e-07	1	1
ENSXCOP00000020949	RRM_1	PF00076.22	1.9e-07	1	1
ENSXCOP00000020946	RRM_1	PF00076.22	6.2e-06	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSXCOT00000021207	-	384	-	ENSXCOP00000020949	127 (aa)	-	-
ENSXCOT00000021206	-	378	-	ENSXCOP00000020948	125 (aa)	-	-
ENSXCOT00000021204	-	360	-	ENSXCOP00000020946	119 (aa)	-	-

Gene Model

Click here to download ENSXCOG00000015682's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSXCOG00000015682's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSXCOG00000015682	-	82	72.115	ENSXCOG00000010506	-	87	72.115

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSXCOG00000015682	-	88	58.716	ENSCVAG00000011435	-	95	58.716	Cyprinodon_variegatus
ENSXCOG00000015682	-	84	73.333	ENSGAFG00000006970	-	96	73.333	Gambusia_affinis
ENSXCOG00000015682	-	70	82.759	ENSGAFG00000006965	-	86	82.759	Gambusia_affinis
ENSXCOG00000015682	-	91	61.607	ENSPFOG00000021959	-	77	69.307	Poecilia_formosa
ENSXCOG00000015682	-	87	76.522	ENSPFOG00000022708	-	85	76.522	Poecilia_formosa
ENSXCOG00000015682	-	85	66.667	ENSPLAG00000013538	-	87	68.269	Poecilia_latipinna
ENSXCOG00000015682	-	93	76.522	ENSPLAG00000023759	-	83	85.849	Poecilia_latipinna
ENSXCOG00000015682	-	87	66.364	ENSPMEG00000014948	-	78	66.364	Poecilia_mexicana
ENSXCOG00000015682	-	97	71.667	ENSPMEG00000014957	-	68	84.906	Poecilia_mexicana
ENSXCOG00000015682	-	83	83.019	ENSPREG00000002388	-	68	83.019	Poecilia_reticulata
ENSXCOG00000015682	-	79	70.707	ENSPREG00000002361	-	94	70.707	Poecilia_reticulata
ENSXCOG00000015682	-	100	96.850	ENSXMAG00000022673	-	93	96.850	Xiphophorus_maculatus
ENSXCOG00000015682	-	82	72.115	ENSXMAG00000027824	-	87	72.115	Xiphophorus_maculatus
ENSXCOG00000015682	-	97	86.667	ENSXMAG00000022455	-	69	96.296	Xiphophorus_maculatus
ENSXCOG00000015682	-	100	98.425	ENSXMAG00000026326	-	93	98.425	Xiphophorus_maculatus
ENSXCOG00000015682	-	85	92.793	ENSXMAG00000027771	-	97	97.980	Xiphophorus_maculatus