EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: ENSXCOG00000015990 (Gene tree)
Gene ID: -
Gene Symbol: parn
Alias: zgc:56067
Full Name: poly(A)-specific ribonuclease (deadenylation nuclease)
Gene Type: protein_coding
Species: Xiphophorus_couchianus
Status: putative
Strand: Plus strand
Length: 7456 bases
Position: chrKQ557220.1:27486055-27493510
Accession: ZDB-GENE-040426-880
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSXCOP00000021365	RNA_bind	PF08675.11	9.9e-34	1	1
ENSXCOP00000021365	CAF1	PF04857.20	7.7e-82	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSXCOT00000021626	-	1764	-	ENSXCOP00000021365	587 (aa)	-	-

Gene Model

Click here to download ENSXCOG00000015990's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSXCOG00000015990's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSXCOG00000015990	parn	96	69.205	ENSG00000140694	PARN	91	79.661	Homo_sapiens
ENSXCOG00000015990	parn	96	68.020	ENSAMEG00000011208	PARN	90	68.782	Ailuropoda_melanoleuca
ENSXCOG00000015990	parn	100	74.571	ENSACIG00000000619	parn	100	74.571	Amphilophus_citrinellus
ENSXCOG00000015990	parn	99	83.333	ENSAOCG00000003465	parn	86	83.333	Amphiprion_ocellaris
ENSXCOG00000015990	parn	83	83.333	ENSAPEG00000010661	parn	94	83.333	Amphiprion_percula
ENSXCOG00000015990	parn	99	82.353	ENSATEG00000004661	parn	87	82.521	Anabas_testudineus
ENSXCOG00000015990	parn	95	68.376	ENSAPLG00000013914	PARN	89	68.870	Anas_platyrhynchos
ENSXCOG00000015990	parn	96	69.983	ENSACAG00000004973	PARN	89	70.187	Anolis_carolinensis
ENSXCOG00000015990	parn	96	69.374	ENSANAG00000031516	PARN	91	79.661	Aotus_nancymaae
ENSXCOG00000015990	parn	99	83.838	ENSACLG00000004742	parn	87	84.007	Astatotilapia_calliptera
ENSXCOG00000015990	parn	99	73.064	ENSAMXG00000012390	parn	96	70.167	Astyanax_mexicanus
ENSXCOG00000015990	parn	96	66.288	ENSBTAG00000018097	PARN	89	68.582	Bos_taurus
ENSXCOG00000015990	parn	96	69.661	ENSCJAG00000015866	PARN	91	79.661	Callithrix_jacchus
ENSXCOG00000015990	parn	96	67.513	ENSCAFG00000018795	PARN	90	68.664	Canis_familiaris
ENSXCOG00000015990	parn	96	67.682	ENSCAFG00020024126	PARN	90	68.836	Canis_lupus_dingo
ENSXCOG00000015990	parn	96	69.140	ENSCHIG00000018143	PARN	90	69.640	Capra_hircus
ENSXCOG00000015990	parn	79	52.586	ENSCAPG00000007984	PARN	78	52.586	Cavia_aperea
ENSXCOG00000015990	parn	96	69.153	ENSCPOG00000002263	PARN	90	69.707	Cavia_porcellus
ENSXCOG00000015990	parn	96	69.374	ENSCCAG00000030367	PARN	91	79.661	Cebus_capucinus
ENSXCOG00000015990	parn	90	73.371	ENSCATG00000041368	PARN	95	73.371	Cercocebus_atys
ENSXCOG00000015990	parn	96	69.374	ENSCLAG00000015406	PARN	90	69.948	Chinchilla_lanigera
ENSXCOG00000015990	parn	96	69.374	ENSCSAG00000008142	PARN	90	69.535	Chlorocebus_sabaeus
ENSXCOG00000015990	parn	94	52.479	ENSCHOG00000007014	PARN	90	52.586	Choloepus_hoffmanni
ENSXCOG00000015990	parn	85	68.750	ENSCPBG00000006609	PARN	89	68.834	Chrysemys_picta_bellii
ENSXCOG00000015990	parn	86	39.212	ENSCING00000010142	-	99	39.513	Ciona_intestinalis
ENSXCOG00000015990	parn	96	61.603	ENSCANG00000028849	-	86	79.661	Colobus_angolensis_palliatus
ENSXCOG00000015990	parn	96	68.858	ENSCGRG00001012096	Parn	89	69.420	Cricetulus_griseus_chok1gshd
ENSXCOG00000015990	parn	96	68.858	ENSCGRG00000004939	Parn	89	69.420	Cricetulus_griseus_crigri
ENSXCOG00000015990	parn	99	78.788	ENSCSEG00000002064	parn	100	75.455	Cynoglossus_semilaevis
ENSXCOG00000015990	parn	100	86.074	ENSCVAG00000014848	parn	87	86.074	Cyprinodon_variegatus
ENSXCOG00000015990	parn	99	68.159	ENSDARG00000102634	parn	96	64.000	Danio_rerio
ENSXCOG00000015990	parn	96	68.866	ENSDNOG00000000833	PARN	94	73.184	Dasypus_novemcinctus
ENSXCOG00000015990	parn	71	73.864	ENSETEG00000014828	-	69	73.864	Echinops_telfairi
ENSXCOG00000015990	parn	67	30.244	ENSEBUG00000008118	PNLDC1	73	30.244	Eptatretus_burgeri
ENSXCOG00000015990	parn	96	69.218	ENSEASG00005011400	PARN	90	69.655	Equus_asinus_asinus
ENSXCOG00000015990	parn	96	69.048	ENSECAG00000017792	PARN	90	69.483	Equus_caballus
ENSXCOG00000015990	parn	70	84.615	ENSEEUG00000010370	PARN	65	84.615	Erinaceus_europaeus
ENSXCOG00000015990	parn	100	75.914	ENSELUG00000013139	parn	79	75.541	Esox_lucius
ENSXCOG00000015990	parn	96	68.519	ENSFCAG00000044961	PARN	86	77.966	Felis_catus
ENSXCOG00000015990	parn	96	68.143	ENSFALG00000003911	PARN	81	72.830	Ficedula_albicollis
ENSXCOG00000015990	parn	96	69.205	ENSFDAG00000009234	PARN	90	69.775	Fukomys_damarensis
ENSXCOG00000015990	parn	100	81.681	ENSFHEG00000013738	parn	92	96.610	Fundulus_heteroclitus
ENSXCOG00000015990	parn	93	77.495	ENSGMOG00000003231	parn	99	77.495	Gadus_morhua
ENSXCOG00000015990	parn	97	68.342	ENSGALG00000003091	PARN	91	69.844	Gallus_gallus
ENSXCOG00000015990	parn	100	92.797	ENSGAFG00000011061	parn	87	92.797	Gambusia_affinis
ENSXCOG00000015990	parn	97	77.720	ENSGACG00000019501	parn	89	80.325	Gasterosteus_aculeatus
ENSXCOG00000015990	parn	96	69.205	ENSGGOG00000025224	PARN	91	79.661	Gorilla_gorilla
ENSXCOG00000015990	parn	99	83.838	ENSHBUG00000017906	parn	93	83.094	Haplochromis_burtoni
ENSXCOG00000015990	parn	96	68.866	ENSHGLG00000010886	PARN	90	69.430	Heterocephalus_glaber_female
ENSXCOG00000015990	parn	96	68.866	ENSHGLG00100014659	PARN	90	69.430	Heterocephalus_glaber_male
ENSXCOG00000015990	parn	92	75.137	ENSHCOG00000008683	parn	94	75.137	Hippocampus_comes
ENSXCOG00000015990	parn	100	62.126	ENSIPUG00000012401	parn	89	62.000	Ictalurus_punctatus
ENSXCOG00000015990	parn	96	68.687	ENSSTOG00000007519	PARN	91	69.178	Ictidomys_tridecemlineatus
ENSXCOG00000015990	parn	96	68.547	ENSJJAG00000023049	Parn	90	69.217	Jaculus_jaculus
ENSXCOG00000015990	parn	99	84.654	ENSKMAG00000009462	parn	87	84.654	Kryptolebias_marmoratus
ENSXCOG00000015990	parn	99	81.240	ENSLBEG00000009167	parn	93	81.407	Labrus_bergylta
ENSXCOG00000015990	parn	84	68.972	ENSLACG00000004207	PARN	94	70.677	Latimeria_chalumnae
ENSXCOG00000015990	parn	99	74.194	ENSLOCG00000000715	parn	83	74.956	Lepisosteus_oculatus
ENSXCOG00000015990	parn	96	69.521	ENSLAFG00000015036	PARN	90	69.861	Loxodonta_africana
ENSXCOG00000015990	parn	96	67.973	ENSMFAG00000044852	PARN	86	79.661	Macaca_fascicularis
ENSXCOG00000015990	parn	96	69.205	ENSMMUG00000018849	PARN	86	79.661	Macaca_mulatta
ENSXCOG00000015990	parn	96	69.374	ENSMNEG00000045108	PARN	86	79.661	Macaca_nemestrina
ENSXCOG00000015990	parn	96	69.205	ENSMLEG00000031743	PARN	86	79.661	Mandrillus_leucophaeus
ENSXCOG00000015990	parn	99	82.077	ENSMAMG00000006939	parn	87	81.910	Mastacembelus_armatus
ENSXCOG00000015990	parn	99	84.007	ENSMZEG00005013590	parn	93	82.914	Maylandia_zebra
ENSXCOG00000015990	parn	95	66.382	ENSMGAG00000001004	PARN	89	67.311	Meleagris_gallopavo
ENSXCOG00000015990	parn	96	64.626	ENSMAUG00000008025	Parn	90	64.948	Mesocricetus_auratus
ENSXCOG00000015990	parn	96	69.192	ENSMICG00000016053	PARN	91	77.966	Microcebus_murinus
ENSXCOG00000015990	parn	83	74.343	ENSMOCG00000022211	Parn	100	74.343	Microtus_ochrogaster
ENSXCOG00000015990	parn	93	80.505	ENSMMOG00000011333	parn	90	80.505	Mola_mola
ENSXCOG00000015990	parn	83	75.703	ENSMODG00000004915	PARN	99	75.703	Monodelphis_domestica
ENSXCOG00000015990	parn	95	81.272	ENSMALG00000019426	parn	94	83.032	Monopterus_albus
ENSXCOG00000015990	parn	96	68.284	MGP_CAROLIEiJ_G0020466	Parn	89	69.136	Mus_caroli
ENSXCOG00000015990	parn	96	67.698	ENSMUSG00000022685	Parn	100	74.390	Mus_musculus
ENSXCOG00000015990	parn	96	68.213	MGP_PahariEiJ_G0016172	Parn	89	68.935	Mus_pahari
ENSXCOG00000015990	parn	96	67.869	MGP_SPRETEiJ_G0021361	Parn	89	68.586	Mus_spretus
ENSXCOG00000015990	parn	96	68.528	ENSMPUG00000014464	PARN	90	69.191	Mustela_putorius_furo
ENSXCOG00000015990	parn	83	73.589	ENSMLUG00000005414	PARN	100	73.843	Myotis_lucifugus
ENSXCOG00000015990	parn	93	82.640	ENSNBRG00000006805	parn	93	82.640	Neolamprologus_brichardi
ENSXCOG00000015990	parn	96	69.543	ENSNLEG00000010241	PARN	91	79.661	Nomascus_leucogenys
ENSXCOG00000015990	parn	79	65.000	ENSMEUG00000008178	-	74	65.000	Notamacropus_eugenii
ENSXCOG00000015990	parn	94	64.594	ENSOPRG00000012187	PARN	90	64.808	Ochotona_princeps
ENSXCOG00000015990	parn	96	65.625	ENSODEG00000001617	PARN	89	66.135	Octodon_degus
ENSXCOG00000015990	parn	99	83.670	ENSONIG00000000151	parn	87	83.838	Oreochromis_niloticus
ENSXCOG00000015990	parn	51	65.325	ENSOANG00000020155	-	70	72.826	Ornithorhynchus_anatinus
ENSXCOG00000015990	parn	95	68.376	ENSOCUG00000000322	PARN	90	68.870	Oryctolagus_cuniculus
ENSXCOG00000015990	parn	99	81.282	ENSORLG00020010313	parn	88	81.282	Oryzias_latipes_hni
ENSXCOG00000015990	parn	99	81.450	ENSORLG00015000300	parn	88	81.450	Oryzias_latipes_hsok
ENSXCOG00000015990	parn	99	80.776	ENSOMEG00000019555	parn	97	80.455	Oryzias_melastigma
ENSXCOG00000015990	parn	83	72.837	ENSOGAG00000014626	PARN	100	72.837	Otolemur_garnettii
ENSXCOG00000015990	parn	83	74.849	ENSOARG00000007574	PARN	100	74.849	Ovis_aries
ENSXCOG00000015990	parn	96	69.036	ENSPPAG00000031438	PARN	91	79.661	Pan_paniscus
ENSXCOG00000015990	parn	96	68.519	ENSPPRG00000018583	PARN	86	77.966	Panthera_pardus
ENSXCOG00000015990	parn	96	68.519	ENSPTIG00000012135	PARN	86	77.966	Panthera_tigris_altaica
ENSXCOG00000015990	parn	96	69.036	ENSPTRG00000007792	PARN	91	79.661	Pan_troglodytes
ENSXCOG00000015990	parn	96	66.836	ENSPANG00000020099	PARN	86	79.661	Papio_anubis
ENSXCOG00000015990	parn	99	71.667	ENSPKIG00000022807	parn	90	69.097	Paramormyrops_kingsleyae
ENSXCOG00000015990	parn	96	69.573	ENSPSIG00000014804	PARN	90	69.828	Pelodiscus_sinensis
ENSXCOG00000015990	parn	99	76.182	ENSPMGG00000014431	parn	83	76.689	Periophthalmus_magnuspinnatus
ENSXCOG00000015990	parn	96	66.954	ENSPEMG00000018439	Parn	90	67.188	Peromyscus_maniculatus_bairdii
ENSXCOG00000015990	parn	87	65.769	ENSPMAG00000003956	parn	98	65.769	Petromyzon_marinus
ENSXCOG00000015990	parn	67	71.465	ENSPCIG00000001259	PARN	91	79.661	Phascolarctos_cinereus
ENSXCOG00000015990	parn	100	91.611	ENSPFOG00000012823	parn	87	91.611	Poecilia_formosa
ENSXCOG00000015990	parn	100	91.779	ENSPLAG00000006395	parn	87	91.779	Poecilia_latipinna
ENSXCOG00000015990	parn	100	91.779	ENSPMEG00000007711	parn	87	91.779	Poecilia_mexicana
ENSXCOG00000015990	parn	100	92.282	ENSPREG00000000147	parn	87	92.282	Poecilia_reticulata
ENSXCOG00000015990	parn	96	68.634	ENSPPYG00000007123	PARN	90	68.782	Pongo_abelii
ENSXCOG00000015990	parn	91	58.602	ENSPCAG00000001741	PARN	82	62.698	Procavia_capensis
ENSXCOG00000015990	parn	96	67.121	ENSPCOG00000019292	PARN	91	77.966	Propithecus_coquereli
ENSXCOG00000015990	parn	95	65.109	ENSPVAG00000002547	PARN	90	65.535	Pteropus_vampyrus
ENSXCOG00000015990	parn	99	83.502	ENSPNYG00000006835	parn	93	80.216	Pundamilia_nyererei
ENSXCOG00000015990	parn	92	72.578	ENSPNAG00000018905	parn	88	72.578	Pygocentrus_nattereri
ENSXCOG00000015990	parn	96	68.685	ENSRNOG00000002912	Parn	96	77.551	Rattus_norvegicus
ENSXCOG00000015990	parn	96	67.513	ENSSBOG00000034726	PARN	86	79.661	Saimiri_boliviensis_boliviensis
ENSXCOG00000015990	parn	66	77.354	ENSSHAG00000008493	PARN	88	77.354	Sarcophilus_harrisii
ENSXCOG00000015990	parn	100	71.096	ENSSFOG00015014165	parn	98	69.179	Scleropages_formosus
ENSXCOG00000015990	parn	99	80.672	ENSSMAG00000000685	parn	90	78.175	Scophthalmus_maximus
ENSXCOG00000015990	parn	99	82.747	ENSSDUG00000014555	parn	87	83.250	Seriola_dumerili
ENSXCOG00000015990	parn	73	74.541	ENSSARG00000014339	PARN	75	74.541	Sorex_araneus
ENSXCOG00000015990	parn	96	68.020	ENSSPUG00000007719	PARN	90	68.330	Sphenodon_punctatus
ENSXCOG00000015990	parn	99	83.670	ENSSPAG00000007095	parn	89	82.278	Stegastes_partitus
ENSXCOG00000015990	parn	96	68.528	ENSSSCG00000007878	PARN	80	69.191	Sus_scrofa
ENSXCOG00000015990	parn	96	67.918	ENSTGUG00000004971	PARN	82	72.881	Taeniopygia_guttata
ENSXCOG00000015990	parn	95	80.000	ENSTNIG00000008252	parn	90	80.702	Tetraodon_nigroviridis
ENSXCOG00000015990	parn	86	59.057	ENSTBEG00000010407	PARN	89	59.266	Tupaia_belangeri
ENSXCOG00000015990	parn	95	64.395	ENSTTRG00000002843	PARN	90	64.991	Tursiops_truncatus
ENSXCOG00000015990	parn	73	66.129	ENSUAMG00000008283	PARN	94	62.442	Ursus_americanus
ENSXCOG00000015990	parn	96	68.359	ENSUMAG00000004527	PARN	90	69.191	Ursus_maritimus
ENSXCOG00000015990	parn	95	65.753	ENSVPAG00000008968	PARN	93	66.493	Vicugna_pacos
ENSXCOG00000015990	parn	96	67.851	ENSVVUG00000019509	PARN	90	69.007	Vulpes_vulpes
ENSXCOG00000015990	parn	96	66.269	ENSXETG00000010994	parn	100	70.810	Xenopus_tropicalis
ENSXCOG00000015990	parn	100	93.782	ENSXMAG00000014783	parn	87	93.782	Xiphophorus_maculatus