EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: ENSXCOG00000016028 (Gene tree)
Gene ID: -
Gene Symbol: rad54l (1 of many)
Alias: zgc:56289
Full Name: RAD54 like
Gene Type: protein_coding
Species: Xiphophorus_couchianus
Status: putative
Strand: Minus strand
Length: 7463 bases
Position: chrKQ557225.1:54688036-54695498
Accession: ZDB-GENE-040426-968
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSXCOP00000021420	ResIII	PF04851.15	4.2e-08	1	1
ENSXCOP00000021423	ResIII	PF04851.15	4.8e-08	1	1
ENSXCOP00000021420	DEAD	PF00270.29	4.4e-07	1	1
ENSXCOP00000021423	DEAD	PF00270.29	5e-07	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSXCOT00000021684	-	1425	-	ENSXCOP00000021423	474 (aa)	-	-
ENSXCOT00000021681	-	1374	-	ENSXCOP00000021420	457 (aa)	-	-

Gene Model

Click here to download ENSXCOG00000016028's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSXCOG00000016028's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSXCOG00000016028	rad54l	81	78.862	ENSG00000085999	RAD54L	100	84.000	Homo_sapiens
ENSXCOG00000016028	rad54l	82	87.798	ENSAPOG00000011643	rad54l	57	84.841	Acanthochromis_polyacanthus
ENSXCOG00000016028	rad54l	82	77.309	ENSAMEG00000013902	RAD54L	55	74.818	Ailuropoda_melanoleuca
ENSXCOG00000016028	rad54l	82	83.069	ENSACIG00000001939	rad54l	55	80.637	Amphilophus_citrinellus
ENSXCOG00000016028	rad54l	82	88.329	ENSAOCG00000017576	rad54l	55	85.294	Amphiprion_ocellaris
ENSXCOG00000016028	rad54l	84	87.435	ENSAPEG00000020658	rad54l	53	87.958	Amphiprion_percula
ENSXCOG00000016028	rad54l	81	90.244	ENSATEG00000006767	rad54l	53	90.296	Anabas_testudineus
ENSXCOG00000016028	rad54l	80	79.019	ENSAPLG00000006389	RAD54L	53	79.133	Anas_platyrhynchos
ENSXCOG00000016028	rad54l	82	79.683	ENSACAG00000002312	RAD54L	55	76.699	Anolis_carolinensis
ENSXCOG00000016028	rad54l	81	78.591	ENSANAG00000035439	RAD54L	55	74.757	Aotus_nancymaae
ENSXCOG00000016028	rad54l	82	84.127	ENSACLG00000018711	rad54l	55	81.572	Astatotilapia_calliptera
ENSXCOG00000016028	rad54l	82	84.350	ENSAMXG00000012777	rad54l	55	82.195	Astyanax_mexicanus
ENSXCOG00000016028	rad54l	81	80.163	ENSBTAG00000019901	RAD54L	55	75.787	Bos_taurus
ENSXCOG00000016028	rad54l	81	79.133	ENSCJAG00000021080	RAD54L	57	75.182	Callithrix_jacchus
ENSXCOG00000016028	rad54l	82	77.309	ENSCAFG00000004272	RAD54L	55	74.757	Canis_familiaris
ENSXCOG00000016028	rad54l	82	77.309	ENSCAFG00020015066	RAD54L	55	74.818	Canis_lupus_dingo
ENSXCOG00000016028	rad54l	81	80.163	ENSCHIG00000020118	RAD54L	55	75.845	Capra_hircus
ENSXCOG00000016028	rad54l	81	78.591	ENSTSYG00000002032	RAD54L	55	74.576	Carlito_syrichta
ENSXCOG00000016028	rad54l	81	79.404	ENSCPOG00000006768	RAD54L	55	75.485	Cavia_porcellus
ENSXCOG00000016028	rad54l	81	78.862	ENSCCAG00000025783	RAD54L	55	75.243	Cebus_capucinus
ENSXCOG00000016028	rad54l	81	78.862	ENSCATG00000030589	RAD54L	55	75.000	Cercocebus_atys
ENSXCOG00000016028	rad54l	81	78.862	ENSCLAG00000004645	RAD54L	55	75.243	Chinchilla_lanigera
ENSXCOG00000016028	rad54l	81	78.862	ENSCSAG00000001229	RAD54L	55	75.000	Chlorocebus_sabaeus
ENSXCOG00000016028	rad54l	80	79.019	ENSCPBG00000005675	RAD54L	55	75.000	Chrysemys_picta_bellii
ENSXCOG00000016028	rad54l	84	63.420	ENSCING00000024456	-	55	63.420	Ciona_intestinalis
ENSXCOG00000016028	rad54l	84	61.072	ENSCSAVG00000010859	-	56	61.072	Ciona_savignyi
ENSXCOG00000016028	rad54l	81	78.862	ENSCANG00000034891	RAD54L	55	74.757	Colobus_angolensis_palliatus
ENSXCOG00000016028	rad54l	82	77.128	ENSCGRG00001014807	Rad54l	55	74.572	Cricetulus_griseus_chok1gshd
ENSXCOG00000016028	rad54l	82	77.128	ENSCGRG00000016038	Rad54l	55	74.572	Cricetulus_griseus_crigri
ENSXCOG00000016028	rad54l	84	82.872	ENSCSEG00000001983	rad54l	54	82.872	Cynoglossus_semilaevis
ENSXCOG00000016028	rad54l	71	87.307	ENSCVAG00000019561	rad54l	57	87.307	Cyprinodon_variegatus
ENSXCOG00000016028	rad54l	81	84.239	ENSDARG00000018623	rad54l	55	80.049	Danio_rerio
ENSXCOG00000016028	rad54l	80	79.564	ENSDNOG00000003395	RAD54L	55	75.485	Dasypus_novemcinctus
ENSXCOG00000016028	rad54l	84	62.110	ENSDORG00000002632	Rad54l	55	62.350	Dipodomys_ordii
ENSXCOG00000016028	rad54l	84	49.519	FBgn0002989	okr	53	49.519	Drosophila_melanogaster
ENSXCOG00000016028	rad54l	82	78.628	ENSETEG00000000550	RAD54L	55	76.214	Echinops_telfairi
ENSXCOG00000016028	rad54l	81	78.804	ENSEASG00005004511	RAD54L	55	75.061	Equus_asinus_asinus
ENSXCOG00000016028	rad54l	80	79.945	ENSECAG00000008760	RAD54L	60	75.728	Equus_caballus
ENSXCOG00000016028	rad54l	82	85.079	ENSELUG00000002295	rad54l	55	82.282	Esox_lucius
ENSXCOG00000016028	rad54l	81	78.533	ENSFCAG00000003444	RAD54L	55	74.272	Felis_catus
ENSXCOG00000016028	rad54l	82	78.100	ENSFALG00000009480	RAD54L	56	75.303	Ficedula_albicollis
ENSXCOG00000016028	rad54l	81	78.591	ENSFDAG00000007806	RAD54L	55	74.757	Fukomys_damarensis
ENSXCOG00000016028	rad54l	83	90.741	ENSFHEG00000009824	rad54l	68	88.161	Fundulus_heteroclitus
ENSXCOG00000016028	rad54l	81	83.424	ENSGMOG00000014568	rad54l	55	79.950	Gadus_morhua
ENSXCOG00000016028	rad54l	84	76.341	ENSGALG00000010356	RAD54L	51	76.341	Gallus_gallus
ENSXCOG00000016028	rad54l	85	95.630	ENSGAFG00000011110	rad54l	60	95.577	Gambusia_affinis
ENSXCOG00000016028	rad54l	89	80.471	ENSGACG00000003111	rad54l	54	84.352	Gasterosteus_aculeatus
ENSXCOG00000016028	rad54l	86	72.986	ENSGAGG00000014089	RAD54L	55	72.986	Gopherus_agassizii
ENSXCOG00000016028	rad54l	81	78.862	ENSGGOG00000010602	RAD54L	55	75.000	Gorilla_gorilla
ENSXCOG00000016028	rad54l	82	84.392	ENSHBUG00000007793	rad54l	55	81.818	Haplochromis_burtoni
ENSXCOG00000016028	rad54l	81	79.133	ENSHGLG00000000753	RAD54L	55	75.485	Heterocephalus_glaber_female
ENSXCOG00000016028	rad54l	81	79.133	ENSHGLG00100016987	RAD54L	55	75.000	Heterocephalus_glaber_male
ENSXCOG00000016028	rad54l	82	84.000	ENSIPUG00000015999	rad54l	53	84.973	Ictalurus_punctatus
ENSXCOG00000016028	rad54l	81	78.320	ENSSTOG00000029125	RAD54L	55	74.272	Ictidomys_tridecemlineatus
ENSXCOG00000016028	rad54l	81	71.816	ENSJJAG00000000235	-	59	68.689	Jaculus_jaculus
ENSXCOG00000016028	rad54l	82	86.472	ENSKMAG00000009944	rad54l	55	83.538	Kryptolebias_marmoratus
ENSXCOG00000016028	rad54l	83	86.508	ENSLBEG00000014617	rad54l	50	89.535	Labrus_bergylta
ENSXCOG00000016028	rad54l	82	83.905	ENSLOCG00000004144	rad54l	61	81.220	Lepisosteus_oculatus
ENSXCOG00000016028	rad54l	82	78.100	ENSLAFG00000007583	RAD54L	56	75.787	Loxodonta_africana
ENSXCOG00000016028	rad54l	81	78.862	ENSMFAG00000031241	RAD54L	55	75.000	Macaca_fascicularis
ENSXCOG00000016028	rad54l	81	78.862	ENSMMUG00000011568	RAD54L	55	75.000	Macaca_mulatta
ENSXCOG00000016028	rad54l	81	78.862	ENSMNEG00000038562	RAD54L	55	75.000	Macaca_nemestrina
ENSXCOG00000016028	rad54l	81	78.862	ENSMLEG00000038145	RAD54L	55	75.000	Mandrillus_leucophaeus
ENSXCOG00000016028	rad54l	84	84.197	ENSMAMG00000022180	rad54l	51	87.106	Mastacembelus_armatus
ENSXCOG00000016028	rad54l	82	84.127	ENSMZEG00005018081	rad54l	55	81.572	Maylandia_zebra
ENSXCOG00000016028	rad54l	84	76.399	ENSMGAG00000010634	RAD54L	55	76.399	Meleagris_gallopavo
ENSXCOG00000016028	rad54l	82	78.191	ENSMAUG00000020076	Rad54l	55	75.550	Mesocricetus_auratus
ENSXCOG00000016028	rad54l	81	79.404	ENSMICG00000003266	RAD54L	55	75.728	Microcebus_murinus
ENSXCOG00000016028	rad54l	84	76.364	ENSMOCG00000001778	Rad54l	55	75.061	Microtus_ochrogaster
ENSXCOG00000016028	rad54l	77	88.451	ENSMALG00000021148	rad54l	56	80.435	Monopterus_albus
ENSXCOG00000016028	rad54l	81	71.026	MGP_CAROLIEiJ_G0026325	Rad54l	56	67.898	Mus_caroli
ENSXCOG00000016028	rad54l	81	78.591	ENSMUSG00000028702	Rad54l	55	74.515	Mus_musculus
ENSXCOG00000016028	rad54l	82	77.249	MGP_PahariEiJ_G0028657	Rad54l	55	74.453	Mus_pahari
ENSXCOG00000016028	rad54l	81	78.591	MGP_SPRETEiJ_G0027297	Rad54l	55	74.515	Mus_spretus
ENSXCOG00000016028	rad54l	82	77.368	ENSMPUG00000012883	RAD54L	55	74.879	Mustela_putorius_furo
ENSXCOG00000016028	rad54l	82	78.364	ENSMLUG00000003763	RAD54L	55	76.029	Myotis_lucifugus
ENSXCOG00000016028	rad54l	81	77.778	ENSNGAG00000024213	Rad54l	55	73.723	Nannospalax_galili
ENSXCOG00000016028	rad54l	81	78.591	ENSNLEG00000016548	RAD54L	55	74.515	Nomascus_leucogenys
ENSXCOG00000016028	rad54l	78	76.966	ENSOPRG00000016016	RAD54L	52	74.545	Ochotona_princeps
ENSXCOG00000016028	rad54l	81	79.675	ENSODEG00000008519	RAD54L	55	75.971	Octodon_degus
ENSXCOG00000016028	rad54l	83	84.031	ENSONIG00000007659	rad54l	55	81.818	Oreochromis_niloticus
ENSXCOG00000016028	rad54l	83	77.513	ENSOCUG00000005229	RAD54L	55	75.000	Oryctolagus_cuniculus
ENSXCOG00000016028	rad54l	84	81.841	ENSORLG00000002958	rad54l	55	81.841	Oryzias_latipes
ENSXCOG00000016028	rad54l	81	85.870	ENSORLG00020006554	rad54l	51	88.000	Oryzias_latipes_hni
ENSXCOG00000016028	rad54l	84	81.886	ENSORLG00015002907	rad54l	55	81.373	Oryzias_latipes_hsok
ENSXCOG00000016028	rad54l	80	86.104	ENSOMEG00000007770	rad54l	55	82.090	Oryzias_melastigma
ENSXCOG00000016028	rad54l	81	80.217	ENSOARG00000002264	RAD54L	55	75.845	Ovis_aries
ENSXCOG00000016028	rad54l	81	78.862	ENSPPAG00000031222	RAD54L	55	75.000	Pan_paniscus
ENSXCOG00000016028	rad54l	81	78.533	ENSPPRG00000010317	RAD54L	55	74.272	Panthera_pardus
ENSXCOG00000016028	rad54l	81	78.533	ENSPTIG00000012200	RAD54L	55	74.272	Panthera_tigris_altaica
ENSXCOG00000016028	rad54l	81	78.862	ENSPTRG00000000689	RAD54L	55	75.000	Pan_troglodytes
ENSXCOG00000016028	rad54l	81	78.862	ENSPANG00000016295	RAD54L	58	75.000	Papio_anubis
ENSXCOG00000016028	rad54l	91	72.947	ENSPKIG00000016172	rad54l	55	75.123	Paramormyrops_kingsleyae
ENSXCOG00000016028	rad54l	80	79.564	ENSPSIG00000003258	RAD54L	55	75.248	Pelodiscus_sinensis
ENSXCOG00000016028	rad54l	84	75.248	ENSPMGG00000016335	rad54l	55	75.248	Periophthalmus_magnuspinnatus
ENSXCOG00000016028	rad54l	82	78.191	ENSPEMG00000011422	Rad54l	55	75.550	Peromyscus_maniculatus_bairdii
ENSXCOG00000016028	rad54l	81	77.446	ENSPMAG00000007719	rad54l	55	73.544	Petromyzon_marinus
ENSXCOG00000016028	rad54l	83	76.501	ENSPCIG00000029032	RAD54L	55	74.757	Phascolarctos_cinereus
ENSXCOG00000016028	rad54l	81	98.645	ENSPFOG00000013732	rad54l	58	98.652	Poecilia_formosa
ENSXCOG00000016028	rad54l	82	86.717	ENSPLAG00000023416	rad54l	58	94.901	Poecilia_latipinna
ENSXCOG00000016028	rad54l	90	94.495	ENSPMEG00000008299	rad54l	62	94.495	Poecilia_mexicana
ENSXCOG00000016028	rad54l	82	97.878	ENSPREG00000019955	rad54l	55	94.840	Poecilia_reticulata
ENSXCOG00000016028	rad54l	81	79.133	ENSPPYG00000001398	RAD54L	60	75.000	Pongo_abelii
ENSXCOG00000016028	rad54l	81	78.591	ENSPCOG00000015423	RAD54L	55	75.000	Propithecus_coquereli
ENSXCOG00000016028	rad54l	84	78.086	ENSPNYG00000002942	rad54l	52	78.086	Pundamilia_nyererei
ENSXCOG00000016028	rad54l	82	85.146	ENSPNAG00000012483	rad54l	55	82.152	Pygocentrus_nattereri
ENSXCOG00000016028	rad54l	81	78.533	ENSRNOG00000013148	Rad54l	55	74.515	Rattus_norvegicus
ENSXCOG00000016028	rad54l	81	78.862	ENSRBIG00000043495	RAD54L	55	75.000	Rhinopithecus_bieti
ENSXCOG00000016028	rad54l	81	78.862	ENSRROG00000020844	RAD54L	55	75.000	Rhinopithecus_roxellana
ENSXCOG00000016028	rad54l	81	78.862	ENSSBOG00000024672	RAD54L	55	75.000	Saimiri_boliviensis_boliviensis
ENSXCOG00000016028	rad54l	84	75.121	ENSSHAG00000000110	RAD54L	55	75.121	Sarcophilus_harrisii
ENSXCOG00000016028	rad54l	83	88.889	ENSSDUG00000019147	rad54l	55	86.275	Seriola_dumerili
ENSXCOG00000016028	rad54l	83	87.831	ENSSLDG00000012330	rad54l	55	85.539	Seriola_lalandi_dorsalis
ENSXCOG00000016028	rad54l	75	81.818	ENSSARG00000006689	RAD54L	55	81.924	Sorex_araneus
ENSXCOG00000016028	rad54l	82	86.772	ENSSPAG00000011016	rad54l	55	83.824	Stegastes_partitus
ENSXCOG00000016028	rad54l	82	77.836	ENSSSCG00000003905	RAD54L	55	75.485	Sus_scrofa
ENSXCOG00000016028	rad54l	80	79.837	ENSTGUG00000008233	RAD54L	56	75.303	Taeniopygia_guttata
ENSXCOG00000016028	rad54l	84	79.849	ENSTRUG00000008410	rad54l	50	85.070	Takifugu_rubripes
ENSXCOG00000016028	rad54l	93	71.041	ENSTNIG00000004716	rad54l	55	77.723	Tetraodon_nigroviridis
ENSXCOG00000016028	rad54l	84	67.476	ENSTTRG00000006315	RAD54L	55	67.476	Tursiops_truncatus
ENSXCOG00000016028	rad54l	82	77.309	ENSUAMG00000011824	RAD54L	56	74.755	Ursus_americanus
ENSXCOG00000016028	rad54l	82	77.309	ENSUMAG00000023603	RAD54L	57	74.755	Ursus_maritimus
ENSXCOG00000016028	rad54l	82	77.309	ENSVVUG00000007201	RAD54L	55	74.757	Vulpes_vulpes
ENSXCOG00000016028	rad54l	82	68.519	ENSXETG00000004369	rad54l	53	68.519	Xenopus_tropicalis